vOTU-036323

Overview

vOTU representative UHGV-1520859

No. of genomes 3

Genome length 19,517 bps

Completeness 50.74% (medium-quality)

Host Faecalibacterium prausnitzii D

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-036323
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 › vSUBFAM-00033 › vGENUS-16293 › vOTU-036323
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Faecalibacterium › Faecalibacterium prausnitzii D
Host range breadth	Species
Host prediction method	PHIST
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1520859
BioSample	SAMEA2579942
Genome length	19,517 bps
CheckV completeness	50.74% (medium-quality)
CheckV contamination	0.00%
CDS count	37
CDS density	87.58%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1520859_1	KOfam	K14059	int; integrase	NA
UHGV-1520859_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1520859_1	UniRef90	UniRef90_A0A6N7TNW8	Tyrosine-type recombinase/integrase	NA
UHGV-1520859_1	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-1520859_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1520859_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1520859_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1520859_1	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-1520859_3	eggNOG-mapper	1280676.AUJO01000009_gene1947	NA	NA
UHGV-1520859_3	Structural annotation	PF02556, MF_00821, NF004392, COG1952	NA	NA
UHGV-1520859_4	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-1520859_4	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-1520859_4	UniRef90	UniRef90_A0A6N7TQ25	Helix-turn-helix domain-containing protein	NA
UHGV-1520859_4	eggNOG-mapper	748224.HMPREF9436_03379	sequence-specific DNA binding	NA
UHGV-1520859_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1520859_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1520859_6	UniRef90	UniRef90_UPI001CBE4822	helix-turn-helix domain-containing protein	NA
UHGV-1520859_6	eggNOG-mapper	1226322.HMPREF1545_00148	Transcriptional	NA
UHGV-1520859_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1520859_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1520859_6	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-1520859_7	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1520859_7	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1520859_7	UniRef90	UniRef90_A0A2A7BH16	HTH cro/C1-type domain-containing protein	NA
UHGV-1520859_7	eggNOG-mapper	411483.FAEPRAA2165_03041	NA	NA
UHGV-1520859_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1520859_7	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1520859_7	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1520859_7	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-1520859_8	UniRef90	UniRef90_A0A2A7BGV0	HTH_8 domain-containing protein	NA
UHGV-1520859_8	eggNOG-mapper	1033744.CAEL01000029_gene1308	NA	NA
UHGV-1520859_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1520859_8	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-1520859_10	Structural annotation	NF041909	NA	NA
UHGV-1520859_11	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1520859_11	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-1520859_11	UniRef90	UniRef90_A0A2J4JRR8	Phage regulatory protein/antirepressor Ant	NA
UHGV-1520859_11	eggNOG-mapper	1423816.BACQ01000027_gene970	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-1520859_11	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1520859_11	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1520859_11	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-1520859_11	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-1520859_11	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-1520859_12	UniRef90	UniRef90_A0A2J4JRR2	XRE family transcriptional regulator	NA
UHGV-1520859_12	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1520859_13	UniRef90	UniRef90_UPI00130EBC54	NA	NA
UHGV-1520859_13	eggNOG-mapper	762051.LKI_01980	NA	NA
UHGV-1520859_13	Pfam	PF05339	NA	DUF739
UHGV-1520859_13	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-1520859_13	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-1520859_17	PHROG	phrog_38771	NA	unknown function
UHGV-1520859_18	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1520859_18	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-1520859_18	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-1520859_18	Pfam	PF04404	ERF superfamily	ERF
UHGV-1520859_18	Structural annotation	PF04404, COG4712	NA	NA
UHGV-1520859_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1520859_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1520859_19	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-1520859_19	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1520859_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1520859_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1520859_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1520859_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1520859_19	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-1520859_20	Structural annotation	PF20964, PF13384, NF011523	NA	NA
UHGV-1520859_21	PHROG	phrog_15768	NA	unknown function
UHGV-1520859_21	UniRef90	UniRef90_A0A3F3JUK4	NA	NA
UHGV-1520859_21	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-1520859_21	Pfam	PF19808	NA	DUF6291
UHGV-1520859_21	Structural annotation	PF19808	NA	NA
UHGV-1520859_22	Structural annotation	PF11417	NA	NA
UHGV-1520859_23	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1520859_23	UniRef90	UniRef90_E2ZNS5	Siphovirus Gp157	NA
UHGV-1520859_23	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-1520859_23	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1520859_23	Structural annotation	PF05565	NA	NA
UHGV-1520859_28	PHROG	phrog_6568	NA	unknown function
UHGV-1520859_28	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-1520859_30	PHROG	phrog_3253	NA	unknown function
UHGV-1520859_30	UniRef90	UniRef90_A0A2J4JRQ6	Resolvase	NA
UHGV-1520859_30	eggNOG-mapper	1151292.QEW_3282	NA	NA
UHGV-1520859_30	Structural annotation	PF18618	NA	NA
UHGV-1520859_32	KOfam	K03700	recU; recombination protein U	NA
UHGV-1520859_32	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1520859_32	UniRef90	UniRef90_A0A1C5P0D5	Holliday junction resolvase RecU	NA
UHGV-1520859_32	eggNOG-mapper	748224.HMPREF9436_03347	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-1520859_32	Pfam	PF03838	Recombination protein U	RecU
UHGV-1520859_32	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-1520859_32	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-1520859_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1520859_33	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-1520859_34	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1520859_34	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1520859_34	UniRef90	UniRef90_A0A3A6JQY9	Terminase small subunit	NA
UHGV-1520859_34	eggNOG-mapper	742740.HMPREF9474_03499	Terminase Small Subunit	NA
UHGV-1520859_34	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1520859_34	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1520859_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1520859_35	PHROG	phrog_10250	NA	unknown function
UHGV-1520859_35	UniRef90	UniRef90_E2ZNR1	Phage terminase, large subunit, PBSX family	NA
UHGV-1520859_35	eggNOG-mapper	748224.HMPREF9436_03341	Phage terminase, large subunit, PBSX family	NA
UHGV-1520859_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-1520859_35	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1520859_36	PHROG	phrog_533	portal protein	head and packaging
UHGV-1520859_36	UniRef90	UniRef90_E2ZNR0	Putative phage minor capsid protein	NA
UHGV-1520859_36	eggNOG-mapper	748224.HMPREF9436_03340	NA	NA
UHGV-1520859_36	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1520859_37	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1520859_37	UniRef90	UniRef90_UPI00122C2EE8	phage minor capsid protein	NA
UHGV-1520859_37	eggNOG-mapper	748224.HMPREF9436_03339	NA	NA
UHGV-1520859_37	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1520859_37	COG	COG2369	NA	NA
UHGV-1520859_37	Structural annotation	PF06152	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1520859	Yes	19,517 bps	53.03%	50.74%	0.9735
UHGV-0068693	No	19,083 bps	53.30%	49.61%	0.9677
UHGV-1619798	No	12,381 bps	51.73%	32.81%	0.9744