vOTU-039473

Overview

vOTU representative UHGV-1419544

No. of genomes 3

Genome length 41,969 bps

Completeness 74.76% (medium-quality)

Host Lachnospiraceae

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-039473
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00007 › vSUBFAM-00026 › vGENUS-00481 › vOTU-039473
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Lachnospirales › Lachnospiraceae
Host range breadth	Family
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1419544
BioSample	SAMEA2338632
Genome length	41,969 bps
CheckV completeness	74.76% (medium-quality)
CheckV contamination	0.00%
CDS count	72
CDS density	94.03%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1419544_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1419544_1	PHROG	phrog_95	integrase	integration and excision
UHGV-1419544_1	UniRef90	UniRef90_UPI001D084942	recombinase family protein	NA
UHGV-1419544_1	eggNOG-mapper	246199.CUS_6803	NA	NA
UHGV-1419544_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1419544_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1419544_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1419544_1	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-1419544_3	UniRef90	UniRef90_A0A8D9PGK7	Response regulator	NA
UHGV-1419544_3	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-1419544_3	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-1419544_7	PHROG	phrog_17690	NA	unknown function
UHGV-1419544_7	eggNOG-mapper	33035.JPJF01000123_gene2433	NA	NA
UHGV-1419544_8	eggNOG-mapper	658655.HMPREF0988_00884	NA	NA
UHGV-1419544_9	PHROG	phrog_757	DNA methyltransferase	other
UHGV-1419544_9	eggNOG-mapper	658655.HMPREF0988_00884	NA	NA
UHGV-1419544_10	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1419544_10	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1419544_10	UniRef90	UniRef90_A0A416NAR5	Methyltransferase	NA
UHGV-1419544_10	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-1419544_10	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1419544_10	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1419544_10	COG	COG0863	DNA modification methylase	NA
UHGV-1419544_10	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-1419544_13	PHROG	phrog_19106	NA	unknown function
UHGV-1419544_13	UniRef90	UniRef90_R6RVQ6	GIY-YIG domain-containing protein	NA
UHGV-1419544_13	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-1419544_13	Structural annotation	TIGR01453	NA	NA
UHGV-1419544_15	PHROG	phrog_20593	NA	unknown function
UHGV-1419544_16	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1419544_16	UniRef90	UniRef90_UPI001186151F	Lar family restriction alleviation protein	NA
UHGV-1419544_16	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1419544_17	UniRef90	UniRef90_R7BIL7	Putative DNA topoisomerase I	NA
UHGV-1419544_17	eggNOG-mapper	397290.C810_05186	NA	NA
UHGV-1419544_18	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1419544_18	UniRef90	UniRef90_A0A373NRP8	MazG domain-containing protein	NA
UHGV-1419544_18	eggNOG-mapper	1680.BADO_1259	NA	NA
UHGV-1419544_20	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1419544_20	UniRef90	UniRef90_A0A3B8SUV3	DnaB_2 domain-containing protein	NA
UHGV-1419544_20	eggNOG-mapper	642492.Clole_1479	DnaD domain protein	NA
UHGV-1419544_20	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1419544_20	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1419544_20	Structural annotation	PF09681, TIGR01714, COG3355	NA	NA
UHGV-1419544_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1419544_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1419544_21	UniRef90	UniRef90_A0A412RR48	Single-stranded DNA-binding protein	NA
UHGV-1419544_21	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-1419544_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1419544_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1419544_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1419544_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1419544_21	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1419544_22	PHROG	phrog_8684	NA	unknown function
UHGV-1419544_22	UniRef90	UniRef90_A0A173RDP8	YopX protein	NA
UHGV-1419544_22	eggNOG-mapper	742733.HMPREF9469_00912	YopX protein	NA
UHGV-1419544_22	Pfam	PF09643	YopX protein	YopX
UHGV-1419544_22	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1419544_22	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1419544_25	UniRef90	UniRef90_A0A0F0C7A4	NA	NA
UHGV-1419544_25	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-1419544_26	PHROG	phrog_1578	NA	unknown function
UHGV-1419544_26	eggNOG-mapper	637730.C8XUQ6_9CAUD	NA	NA
UHGV-1419544_27	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-1419544_27	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1419544_27	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-1419544_27	eggNOG-mapper	748727.CLJU_c31620	Metallo-beta-lactamase superfamily	NA
UHGV-1419544_27	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-1419544_27	dbAPIS	APIS058	NA	NA
UHGV-1419544_27	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1419544_27	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-1419544_28	PHROG	phrog_9822	NA	unknown function
UHGV-1419544_29	PHROG	phrog_25456	NA	unknown function
UHGV-1419544_30	PHROG	phrog_10056	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1419544_30	UniRef90	UniRef90_A0A412RR22	Phage recombination protein Bet	NA
UHGV-1419544_30	eggNOG-mapper	397290.C810_01467	Phage recombination protein Bet	NA
UHGV-1419544_30	Pfam	PF03837	RecT family	RecT
UHGV-1419544_30	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-1419544_30	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1419544_30	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-1419544_32	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1419544_32	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1419544_32	UniRef90	UniRef90_A0A8D9PGW5	Chromosome partition protein	NA
UHGV-1419544_32	eggNOG-mapper	1298920.KI911353_gene2731	nuclear chromosome segregation	NA
UHGV-1419544_32	Pfam	PF13476	AAA domain	AAA_23
UHGV-1419544_32	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1419544_32	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1419544_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1419544_33	PHROG	phrog_26861	NA	unknown function
UHGV-1419544_33	UniRef90	UniRef90_R6LGA2	Single-strand binding family protein	NA
UHGV-1419544_33	eggNOG-mapper	469618.FVAG_01197	Single-stranded DNA-binding protein	NA
UHGV-1419544_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1419544_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1419544_33	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629, COG5569	NA	NA
UHGV-1419544_35	PHROG	phrog_32437	NA	unknown function
UHGV-1419544_35	UniRef90	UniRef90_A0A139CW26	Soluble lytic murein transglycosylase	NA
UHGV-1419544_35	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-1419544_35	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-1419544_35	Structural annotation	PF01464, MF_01381, NF011856, COG0741	NA	NA
UHGV-1419544_36	PHROG	phrog_4292	NA	unknown function
UHGV-1419544_36	eggNOG-mapper	397290.C810_01449	NA	NA
UHGV-1419544_37	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1419544_37	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1419544_37	UniRef90	UniRef90_A0A1T5K3B0	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-1419544_37	eggNOG-mapper	1123263.AUKY01000072_gene2107	BRO family, N-terminal domain	NA
UHGV-1419544_37	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1419544_37	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1419544_37	COG	COG3617	Prophage antirepressor	NA
UHGV-1419544_37	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-1419544_38	UniRef90	UniRef90_UPI001897F865	helix-turn-helix domain-containing protein	NA
UHGV-1419544_38	eggNOG-mapper	699218.HMPREF0889_0316	NA	NA
UHGV-1419544_38	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-1419544_39	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1419544_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1419544_39	UniRef90	UniRef90_UPI001ADDE640	helix-turn-helix domain-containing protein	NA
UHGV-1419544_39	eggNOG-mapper	699218.HMPREF0889_0317	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1419544_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1419544_39	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1419544_39	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-1419544_42	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-1419544_42	PHROG	phrog_3578	metallo-endopeptidase	other
UHGV-1419544_42	UniRef90	UniRef90_R6RRS4	LysM domain/M23/M37 peptidase domain protein	NA
UHGV-1419544_42	eggNOG-mapper	511680.BUTYVIB_00396	peptidase	NA
UHGV-1419544_42	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-1419544_42	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-1419544_42	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-1419544_43	Structural annotation	PF15911	NA	NA
UHGV-1419544_44	PHROG	phrog_6616	tail protein	tail
UHGV-1419544_44	eggNOG-mapper	1262449.CP6013_3213	Phage minor structural protein	NA
UHGV-1419544_44	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1419544_45	PHROG	phrog_1401	NA	unknown function
UHGV-1419544_45	eggNOG-mapper	1415775.U729_2617	NA	NA
UHGV-1419544_45	Structural annotation	PF07761	NA	NA
UHGV-1419544_46	PHROG	phrog_1194	NA	unknown function
UHGV-1419544_46	eggNOG-mapper	1158602.I590_01694	NA	NA
UHGV-1419544_46	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-1419544_47	PHROG	phrog_28918	NA	unknown function
UHGV-1419544_47	UniRef90	UniRef90_A0A318EME6	Phage-related protein	NA
UHGV-1419544_47	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-1419544_47	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1419544_49	PHROG	phrog_36112	NA	unknown function
UHGV-1419544_49	UniRef90	UniRef90_A0A8D9PG71	Tail assembly chaperone protein	NA
UHGV-1419544_49	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-1419544_49	Structural annotation	PF11836	NA	NA
UHGV-1419544_50	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-1419544_50	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1419544_51	Structural annotation	PF05657	NA	NA
UHGV-1419544_52	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-1419544_53	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-1419544_53	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1419544_54	PHROG	phrog_1129	holin	lysis
UHGV-1419544_54	UniRef90	UniRef90_A0A8D9UII9	Holin	NA
UHGV-1419544_54	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-1419544_54	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1419544_54	Structural annotation	PF06946	NA	NA
UHGV-1419544_55	PHROG	phrog_1863	NA	unknown function
UHGV-1419544_55	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA
UHGV-1419544_56	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-1419544_57	UniRef90	UniRef90_A0A8D9UIY7	Rho termination factor	NA
UHGV-1419544_57	Structural annotation	PF21169	NA	NA
UHGV-1419544_58	PHROG	phrog_544	major head protein	head and packaging
UHGV-1419544_58	UniRef90	UniRef90_A0A8D9PGL1	Major capsid protein	NA
UHGV-1419544_58	eggNOG-mapper	608534.GCWU000341_02293	NA	NA
UHGV-1419544_58	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1419544_58	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1419544_60	PHROG	phrog_64	portal protein	head and packaging
UHGV-1419544_60	UniRef90	UniRef90_A0A8D9PG58	Portal protein	NA
UHGV-1419544_60	eggNOG-mapper	397290.C810_01397	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1419544_60	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1419544_60	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1419544_61	UniRef90	UniRef90_A0A8D9UIR9	RimK-related lysine biosynthesis protein	NA
UHGV-1419544_62	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1419544_62	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-1419544_62	Structural annotation	PF02996	NA	NA
UHGV-1419544_63	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1419544_63	UniRef90	UniRef90_A0A8D9UIV2	Terminase	NA
UHGV-1419544_63	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-1419544_63	COG	COG5410	NA	NA
UHGV-1419544_63	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-1419544_64	UniRef90	UniRef90_UPI0011072322	NA	NA
UHGV-1419544_64	eggNOG-mapper	411473.RUMCAL_00360	NA	NA
UHGV-1419544_64	Structural annotation	PF14359, COG3613	NA	NA
UHGV-1419544_67	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-1419544_69	eggNOG-mapper	1499968.TCA2_4415	NA	NA
UHGV-1419544_69	Structural annotation	PF12286	NA	NA
UHGV-1419544_72	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-1419544_72	Structural annotation	PF05225, COG2886	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1419544	Yes	41,969 bps	37.58%	74.76%	0.9816
UHGV-0064049	No	41,969 bps	37.58%	74.76%	0.9816
UHGV-1711596	No	28,060 bps	37.85%	49.78%	0.9811