vOTU-040885

Overview

vOTU representative UHGV-2019604

No. of genomes 2

Genome length 25,290 bps

Completeness 64.45% (medium-quality)

Host UBA6448 sp000437315

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-040885
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00025 › vSUBFAM-00630 › vOTU-040885
Host taxonomy	Bacteria › Firmicutes › Bacilli › RF39 › UBA660 › UBA6448 › UBA6448 sp000437315
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2019604
BioSample	NA
Genome length	25,290 bps
CheckV completeness	64.45% (medium-quality)
CheckV contamination	0.00%
CDS count	49
CDS density	90.30%
tRNA count	2
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2019604_1	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2019604_2	PHROG	phrog_533	portal protein	head and packaging
UHGV-2019604_2	UniRef90	UniRef90_R6Y8H1	Minor capsid protein	NA
UHGV-2019604_2	eggNOG-mapper	545697.HMPREF0216_02845	NA	NA
UHGV-2019604_2	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2019604_2	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2019604_3	eggNOG-mapper	632245.CLP_1642	NA	NA
UHGV-2019604_4	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2019604_4	PHROG	phrog_10250	NA	unknown function
UHGV-2019604_4	UniRef90	UniRef90_A0A3B8SL24	PBSX family phage terminase large subunit	NA
UHGV-2019604_4	eggNOG-mapper	428127.EUBDOL_01229	Phage terminase, large subunit, PBSX family	NA
UHGV-2019604_4	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2019604_4	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2019604_4	COG	COG1783	Phage terminase large subunit	NA
UHGV-2019604_4	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2019604_5	UniRef90	UniRef90_A0A353JAA0	Terminase_3 domain-containing protein (Fragment)	NA
UHGV-2019604_5	eggNOG-mapper	428125.CLOLEP_01805	NA	NA
UHGV-2019604_5	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-2019604_6	Structural annotation	PF10922	NA	NA
UHGV-2019604_8	Structural annotation	PF15456	NA	NA
UHGV-2019604_12	PHROG	phrog_625	NA	unknown function
UHGV-2019604_12	UniRef90	UniRef90_A0A373D1H8	ASCH domain-containing protein	NA
UHGV-2019604_12	eggNOG-mapper	397290.C810_01502	NA	NA
UHGV-2019604_12	Structural annotation	PF12961, NF002008, COG2028	NA	NA
UHGV-2019604_13	Structural annotation	PF17340	NA	NA
UHGV-2019604_22	KOfam	K14680	E6.5.1.3; RNA ligase [EC:6.5.1.3]	NA
UHGV-2019604_22	PHROG	phrog_8238	RNA ligase	DNA, RNA and nucleotide metabolism
UHGV-2019604_22	UniRef90	UniRef90_A0A3A8ZX80	Calcineurin	NA
UHGV-2019604_22	eggNOG-mapper	411474.COPEUT_00782	AAA domain	NA
UHGV-2019604_22	Pfam	PF13671	AAA domain	AAA_33
UHGV-2019604_22	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-2019604_22	Pfam	PF09511	RNA ligase	RNA_lig_T4_1
UHGV-2019604_22	COG	COG0639	Diadenosine tetraphosphatase ApaH/serine/threonine protein phosphatase, PP2A family	NA
UHGV-2019604_22	Structural annotation	PF09511, PF13671, MF_04149, MF_01443, MF_03171, TIGR04075, COG5324, COG4639, COG2129	NA	NA
UHGV-2019604_24	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2019604_24	UniRef90	UniRef90_R7FAF4	NA	NA
UHGV-2019604_24	eggNOG-mapper	293826.Amet_2599	HNH endonuclease	NA
UHGV-2019604_24	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-2019604_24	Structural annotation	PF13392	NA	NA
UHGV-2019604_25	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-2019604_25	eggNOG-mapper	796940.HMPREF9628_00162	NA	NA
UHGV-2019604_25	Structural annotation	MF_00337, NF010671, COG1722	NA	NA
UHGV-2019604_27	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-2019604_27	UniRef90	UniRef90_A0A376GT60	Prophage pi1 protein 29	NA
UHGV-2019604_27	eggNOG-mapper	1123302.KB904167_gene507	NA	NA
UHGV-2019604_30	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2019604_30	eggNOG-mapper	1408437.JNJN01000039_gene370	NA	NA
UHGV-2019604_30	Structural annotation	PF05772, NF007281	NA	NA
UHGV-2019604_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2019604_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2019604_31	UniRef90	UniRef90_R6M217	Single-stranded DNA-binding protein	NA
UHGV-2019604_31	eggNOG-mapper	272623.L0300	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2019604_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2019604_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2019604_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2019604_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2019604_31	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2019604_32	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2019604_32	UniRef90	UniRef90_A0A350H2L7	YqaJ domain-containing protein	NA
UHGV-2019604_32	eggNOG-mapper	1122146.AUHP01000010_gene1042	YqaJ viral recombinase family	NA
UHGV-2019604_32	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2019604_32	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-2019604_32	Structural annotation	PF10926, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-2019604_33	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2019604_33	UniRef90	UniRef90_UPI000F63F93F	ERF family protein	NA
UHGV-2019604_33	eggNOG-mapper	1415775.U729_2586	ERF superfamily	NA
UHGV-2019604_33	Pfam	PF04404	ERF superfamily	ERF
UHGV-2019604_33	Structural annotation	PF04404, COG4712	NA	NA
UHGV-2019604_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2019604_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2019604_35	UniRef90	UniRef90_R7MFT7	Single-stranded DNA-binding protein	NA
UHGV-2019604_35	eggNOG-mapper	1054460.SPPN_05415	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2019604_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2019604_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2019604_35	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2019604_36	Structural annotation	PF11417, PF08209	NA	NA
UHGV-2019604_37	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-2019604_37	PHROG	phrog_4016	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2019604_37	UniRef90	UniRef90_R5A158	DnaD domain protein	NA
UHGV-2019604_37	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-2019604_37	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-2019604_37	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2019604_37	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-2019604_38	Pfam	PF19808	NA	DUF6291
UHGV-2019604_40	Structural annotation	PF11372	NA	NA
UHGV-2019604_44	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2019604_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2019604_44	UniRef90	UniRef90_A0A1Z1SS69	Fimbrial operon regulator	NA
UHGV-2019604_44	eggNOG-mapper	529507.PMI2224	Helix-turn-helix	NA
UHGV-2019604_44	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2019604_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2019604_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2019604_44	Structural annotation	PF12844, NF041677, COG1396	NA	NA
UHGV-2019604_45	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2019604_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2019604_45	UniRef90	UniRef90_A0A353JBB9	HTH cro/C1-type domain-containing protein	NA
UHGV-2019604_45	eggNOG-mapper	862517.HMPREF9225_1675	helix-turn-helix	NA
UHGV-2019604_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2019604_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2019604_45	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2019604_47	KOfam	K14059	int; integrase	NA
UHGV-2019604_47	PHROG	phrog_1	integrase	integration and excision
UHGV-2019604_47	UniRef90	UniRef90_A0A843GV89	Site-specific integrase	NA
UHGV-2019604_47	eggNOG-mapper	1232449.BAHV02000018_gene1556	Site-specific recombinase, phage integrase family	NA
UHGV-2019604_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2019604_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2019604_47	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2019604_48	UniRef90	UniRef90_R7HG21	F420_ligase domain-containing protein	NA
UHGV-2019604_48	eggNOG-mapper	1304866.K413DRAFT_4450	F420-0:Gamma-glutamyl ligase	NA
UHGV-2019604_48	Pfam	PF01996	F420-0:Gamma-glutamyl ligase	F420_ligase
UHGV-2019604_48	COG	COG1478	F420-0:Gamma-glutamyl ligase (F420 biosynthesis)	NA
UHGV-2019604_49	UniRef90	UniRef90_R7NI63	ABC transporter domain-containing protein	NA
UHGV-2019604_49	eggNOG-mapper	1278311.AUAL01000020_gene165	Belongs to the ABC transporter superfamily. Macrolide exporter (TC 3.A.1.122) family	NA
UHGV-2019604_49	Pfam	PF02687	FtsX-like permease family	FtsX
UHGV-2019604_49	COG	COG1136	ABC-type lipoprotein export system, ATPase component	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-2019604	Yes	25,290 bps	25.54%	64.45%	0.9143
UHGV-1844090	No	15,594 bps	25.71%	12.31%	0.9113