vOTU-041692

Overview

vOTU representative UHGV-2064965

No. of genomes 2

Genome length 33,072 bps

Completeness 88.43% (medium-quality)

Host Limivicinus

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-041692
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 › vSUBFAM-00771 › vGENUS-01126 › vOTU-041692
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Oscillospiraceae › Limivicinus
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2064965
BioSample	SAMN05971613
Genome length	33,072 bps
CheckV completeness	88.43% (medium-quality)
CheckV contamination	0.00%
CDS count	61
CDS density	92.42%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2064965_1	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-2064965_2	Structural annotation	PF12510	NA	NA
UHGV-2064965_3	PHROG	phrog_20016	NA	unknown function
UHGV-2064965_3	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-2064965_3	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-2064965_3	Structural annotation	PF18573, NF033147	NA	NA
UHGV-2064965_4	PHROG	phrog_16490	NA	unknown function
UHGV-2064965_4	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-2064965_5	PHROG	phrog_22984	NA	unknown function
UHGV-2064965_6	PHROG	phrog_21718	NA	unknown function
UHGV-2064965_6	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-2064965_7	PHROG	phrog_3754	NA	unknown function
UHGV-2064965_7	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-2064965_9	PHROG	phrog_199	holin	lysis
UHGV-2064965_9	UniRef90	UniRef90_A0A3C0NPD5	Holin	NA
UHGV-2064965_9	eggNOG-mapper	742738.HMPREF9460_00365	Bacteriophage holin family	NA
UHGV-2064965_9	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2064965_9	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2064965_9	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2064965_9	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2064965_10	PHROG	phrog_14030	NA	unknown function
UHGV-2064965_10	UniRef90	UniRef90_A0A316NTC6	PG_binding_1 domain-containing protein	NA
UHGV-2064965_10	eggNOG-mapper	1121115.AXVN01000051_gene809	NLP P60 protein	NA
UHGV-2064965_10	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-2064965_10	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2064965_10	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2064965_10	Structural annotation	PF01471, PF05382, NF038080, NF033742, COG3409, COG0791	NA	NA
UHGV-2064965_12	PHROG	phrog_30034	NA	unknown function
UHGV-2064965_12	UniRef90	UniRef90_A0A2Y9CAD1	Carbohydrate binding domain-containing protein	NA
UHGV-2064965_12	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-2064965_12	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-2064965_12	Structural annotation	PF14600	NA	NA
UHGV-2064965_15	Structural annotation	PF07210, TIGR03000	NA	NA
UHGV-2064965_16	eggNOG-mapper	1408422.JHYF01000026_gene3527	nuclear chromosome segregation	NA
UHGV-2064965_16	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2064965_17	PHROG	phrog_32744	NA	unknown function
UHGV-2064965_17	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-2064965_17	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-2064965_18	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2064965_19	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-2064965_19	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-2064965_19	COG	COG1511	NA	NA
UHGV-2064965_19	Structural annotation	PF20155	NA	NA
UHGV-2064965_21	PHROG	phrog_18646	NA	unknown function
UHGV-2064965_21	UniRef90	UniRef90_B6CXF0	Peptidase-colicin	NA
UHGV-2064965_21	eggNOG-mapper	768704.Desmer_4456	NA	NA
UHGV-2064965_22	PHROG	phrog_885	major tail protein	tail
UHGV-2064965_22	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-2064965_22	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-2064965_22	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-2064965_23	Structural annotation	PF11367	NA	NA
UHGV-2064965_24	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2064965_24	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2064965_26	PHROG	phrog_544	major head protein	head and packaging
UHGV-2064965_26	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-2064965_26	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-2064965_26	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-2064965_26	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2064965_27	Structural annotation	PF06810	NA	NA
UHGV-2064965_28	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2064965_28	UniRef90	UniRef90_UPI0015C5E40B	HK97 gp10 family phage protein	NA
UHGV-2064965_28	eggNOG-mapper	764299.STRIC_1434	NA	NA
UHGV-2064965_28	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2064965_30	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-2064965_30	UniRef90	UniRef90_A0A7X5E1T7	Phage_Mu_F domain-containing protein	NA
UHGV-2064965_30	eggNOG-mapper	1280685.AUKC01000004_gene1632	Phage Mu protein F like protein	NA
UHGV-2064965_30	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2064965_30	COG	COG2369	NA	NA
UHGV-2064965_30	Structural annotation	PF04233, PF21814, TIGR01641, COG2369	NA	NA
UHGV-2064965_31	PHROG	phrog_64	portal protein	head and packaging
UHGV-2064965_31	UniRef90	UniRef90_A0A285PU84	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2064965_31	eggNOG-mapper	411468.CLOSCI_00292	Phage portal protein, SPP1 family	NA
UHGV-2064965_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2064965_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2064965_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2064965_32	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2064965_32	UniRef90	UniRef90_A0A373MY72	PBSX family phage terminase large subunit	NA
UHGV-2064965_32	eggNOG-mapper	397290.C810_05187	Phage terminase large subunit	NA
UHGV-2064965_32	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2064965_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2064965_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-2064965_32	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2064965_33	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-2064965_33	UniRef90	UniRef90_A0A1M5ZJM4	Transposase	NA
UHGV-2064965_33	eggNOG-mapper	1487921.DP68_08850	transposase activity	NA
UHGV-2064965_33	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-2064965_34	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2064965_34	PHROG	phrog_498	DNA methyltransferase	other
UHGV-2064965_34	UniRef90	UniRef90_R5AIZ8	Methyltransferase	NA
UHGV-2064965_34	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-2064965_34	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2064965_34	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2064965_34	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2064965_34	COG	COG0863	DNA modification methylase	NA
UHGV-2064965_34	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-2064965_35	Structural annotation	PF06530, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-2064965_37	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2064965_37	eggNOG-mapper	1226322.HMPREF1545_03841	NA	NA
UHGV-2064965_37	Structural annotation	PF01446, NF041486	NA	NA
UHGV-2064965_38	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-2064965_38	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-2064965_38	eggNOG-mapper	56780.SYN_03368	translation initiation factor activity	NA
UHGV-2064965_38	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2064965_38	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-2064965_38	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-2064965_38	COG	COG1601	Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain	NA
UHGV-2064965_38	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-2064965_40	PHROG	phrog_3136	NA	unknown function
UHGV-2064965_40	UniRef90	UniRef90_UPI001A9A8D4F	ASCH domain-containing protein	NA
UHGV-2064965_40	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-2064965_40	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-2064965_40	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-2064965_42	Pfam	PF09297	NADH pyrophosphatase zinc ribbon domain	zf-NADH-PPase
UHGV-2064965_43	PHROG	phrog_954	DNA methyltransferase	other
UHGV-2064965_43	UniRef90	UniRef90_A0A810Q0N4	Methyltransferase	NA
UHGV-2064965_43	eggNOG-mapper	411461.DORFOR_01143	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-2064965_43	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-2064965_43	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-2064965_43	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-2064965_43	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-2064965_45	UniRef90	UniRef90_A0A345KQM6	DNA cytosine methyltransferase	NA
UHGV-2064965_45	eggNOG-mapper	1589750.A0A0C5AEL6_9CAUD	NA	NA
UHGV-2064965_46	PHROG	phrog_24518	NA	unknown function
UHGV-2064965_46	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-2064965_47	PHROG	phrog_824	NA	unknown function
UHGV-2064965_47	UniRef90	UniRef90_A0A6N8GXS9	VRR-NUC domain-containing protein	NA
UHGV-2064965_47	eggNOG-mapper	665956.HMPREF1032_00132	VRR_NUC	NA
UHGV-2064965_47	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2064965_58	PHROG	phrog_3306	NA	unknown function
UHGV-2064965_58	UniRef90	UniRef90_UPI000CF972A3	NA	NA
UHGV-2064965_58	eggNOG-mapper	469617.FUAG_01932	NA	NA
UHGV-2064965_58	Pfam	PF19670	NA	DUF6173
UHGV-2064965_58	Structural annotation	PF19670	NA	NA
UHGV-2064965_60	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2064965_60	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2064965_60	UniRef90	UniRef90_A0A1Q6RKG1	HTH cro/C1-type domain-containing protein	NA
UHGV-2064965_60	eggNOG-mapper	887325.HMPREF0381_0352	Helix-turn-helix XRE-family like proteins	NA
UHGV-2064965_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2064965_60	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2064965_60	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-2064965	Yes	33,072 bps	54.71%	88.43%	0.9812
UHGV-2095152	No	10,733 bps	53.87%	30.28%	0.9749