vOTU-042635

Overview

vOTU representative UHGV-0020003

No. of genomes 11

Genome length 42,620 bps

Completeness 100.00% (complete)

Host CAG-170 sp000432135

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-042635
Number of genomes	11
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 › vSUBFAM-00020 › vGENUS-02741 › vSUBGEN-24972 › vOTU-042635
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Oscillospiraceae › CAG-170 › CAG-170 sp000432135
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0020003
BioSample	NA
Genome length	42,620 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	75
CDS density	94.28%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0020003_2	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0020003_2	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0020003_2	UniRef90	UniRef90_UPI001D087498	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0020003_2	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0020003_2	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0020003_2	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0020003_2	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0020003_2	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0020003_5	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0020003_5	UniRef90	UniRef90_UPI00164D8A5B	replisome organizer	NA
UHGV-0020003_5	eggNOG-mapper	742740.HMPREF9474_03117	NA	NA
UHGV-0020003_5	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-0020003_6	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0020003_6	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0020003_6	UniRef90	UniRef90_R6LLA3	Single-stranded DNA-binding protein	NA
UHGV-0020003_6	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0020003_6	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0020003_6	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0020003_6	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0020003_6	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0020003_6	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0020003_7	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0020003_7	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0020003_7	UniRef90	UniRef90_A0A1Y4W4R3	Recombinase RecT	NA
UHGV-0020003_7	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0020003_7	Pfam	PF03837	RecT family	RecT
UHGV-0020003_7	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0020003_7	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0020003_7	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0020003_8	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0020003_8	UniRef90	UniRef90_A0A1Y4W4B5	YqaJ domain-containing protein	NA
UHGV-0020003_8	eggNOG-mapper	428125.CLOLEP_01823	YqaJ viral recombinase family	NA
UHGV-0020003_8	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0020003_8	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0020003_8	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0020003_8	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0020003_13	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-0020003_13	Structural annotation	PF09035, NF040990	NA	NA
UHGV-0020003_14	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0020003_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0020003_14	UniRef90	UniRef90_A0A810PZI0	HTH cro/C1-type domain-containing protein	NA
UHGV-0020003_14	eggNOG-mapper	1122143.AUEG01000004_gene1250	Helix-turn-helix domain	NA
UHGV-0020003_14	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0020003_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0020003_14	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0020003_16	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0020003_16	UniRef90	UniRef90_A0A212J3J9	HTH cro/C1-type domain-containing protein	NA
UHGV-0020003_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0020003_16	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0020003_16	Structural annotation	PF01381, NF007257, COG1396	NA	NA
UHGV-0020003_17	Structural annotation	PF13601, TIGR04176, COG1846	NA	NA
UHGV-0020003_20	eggNOG-mapper	1298920.KI911353_gene413	NA	NA
UHGV-0020003_20	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-0020003_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0020003_22	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0020003_22	Structural annotation	PF12844	NA	NA
UHGV-0020003_23	KOfam	K14059	int; integrase	NA
UHGV-0020003_23	PHROG	phrog_1	integrase	integration and excision
UHGV-0020003_23	UniRef90	UniRef90_A0A810Q0Y2	Tyr recombinase domain-containing protein	NA
UHGV-0020003_23	eggNOG-mapper	693746.OBV_43340	Belongs to the 'phage' integrase family	NA
UHGV-0020003_23	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0020003_23	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0020003_23	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0020003_24	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0020003_25	Structural annotation	PF12510	NA	NA
UHGV-0020003_26	PHROG	phrog_20016	NA	unknown function
UHGV-0020003_26	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0020003_26	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0020003_26	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0020003_27	PHROG	phrog_16490	NA	unknown function
UHGV-0020003_27	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0020003_28	PHROG	phrog_22984	NA	unknown function
UHGV-0020003_29	PHROG	phrog_21718	NA	unknown function
UHGV-0020003_29	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0020003_30	PHROG	phrog_3754	NA	unknown function
UHGV-0020003_30	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0020003_31	UniRef90	UniRef90_UPI00164AED9E	helix-turn-helix domain-containing protein	NA
UHGV-0020003_31	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0020003_31	Structural annotation	PF13560, NF040522, COG2944	NA	NA
UHGV-0020003_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0020003_32	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0020003_34	UniRef90	UniRef90_A0A1C6JAI6	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0020003_34	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0020003_35	UniRef90	UniRef90_UPI00164EA432	SH3 domain-containing protein	NA
UHGV-0020003_35	eggNOG-mapper	525254.HMPREF0072_1273	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0020003_35	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0020003_35	Structural annotation	NF033743	NA	NA
UHGV-0020003_36	PHROG	phrog_6918	holin	lysis
UHGV-0020003_36	UniRef90	UniRef90_A0A316QCY7	Holin	NA
UHGV-0020003_36	eggNOG-mapper	1297617.JPJD01000020_gene301	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0020003_36	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0020003_36	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0020003_39	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0020003_39	Structural annotation	PF07484	NA	NA
UHGV-0020003_40	Structural annotation	PF20055, MF_03008, NF010730, COG3940	NA	NA
UHGV-0020003_41	PHROG	phrog_18725	NA	unknown function
UHGV-0020003_41	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0020003_44	PHROG	phrog_19111	NA	unknown function
UHGV-0020003_44	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0020003_44	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0020003_46	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0020003_47	PHROG	phrog_13879	NA	unknown function
UHGV-0020003_47	eggNOG-mapper	693746.OBV_18210	NA	NA
UHGV-0020003_47	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0020003_48	PHROG	phrog_1194	NA	unknown function
UHGV-0020003_48	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-0020003_48	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0020003_49	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0020003_49	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0020003_49	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0020003_49	COG	COG1511	NA	NA
UHGV-0020003_50	PHROG	phrog_706	NA	unknown function
UHGV-0020003_50	UniRef90	UniRef90_A0A2U1BEN4	Bacteriophage Gp15 protein	NA
UHGV-0020003_50	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0020003_50	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0020003_50	Structural annotation	PF06854	NA	NA
UHGV-0020003_51	PHROG	phrog_11299	NA	unknown function
UHGV-0020003_51	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0020003_51	Structural annotation	PF10666	NA	NA
UHGV-0020003_52	PHROG	phrog_3099	NA	unknown function
UHGV-0020003_52	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-0020003_52	Structural annotation	TIGR02126	NA	NA
UHGV-0020003_53	PHROG	phrog_3266	tail completion	connector
UHGV-0020003_53	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0020003_53	Structural annotation	PF12691	NA	NA
UHGV-0020003_54	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0020003_54	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0020003_54	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0020003_54	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0020003_54	Structural annotation	PF11114	NA	NA
UHGV-0020003_55	PHROG	phrog_3366	NA	unknown function
UHGV-0020003_55	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0020003_55	Pfam	PF20536	NA	DUF6751
UHGV-0020003_55	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0020003_56	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0020003_56	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0020003_57	PHROG	phrog_544	major head protein	head and packaging
UHGV-0020003_57	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0020003_57	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0020003_57	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0020003_57	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0020003_58	Structural annotation	PF06810	NA	NA
UHGV-0020003_59	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0020003_59	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-0020003_59	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0020003_59	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0020003_59	COG	COG2369	NA	NA
UHGV-0020003_59	Structural annotation	PF06152	NA	NA
UHGV-0020003_61	PHROG	phrog_533	portal protein	head and packaging
UHGV-0020003_61	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0020003_61	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0020003_61	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0020003_61	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0020003_62	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0020003_62	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0020003_62	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0020003_62	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0020003_62	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0020003_62	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0020003_62	COG	COG1783	Phage terminase large subunit	NA
UHGV-0020003_62	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0020003_64	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0020003_64	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0020003_64	UniRef90	UniRef90_UPI001782D995	DNA modification methylase	NA
UHGV-0020003_64	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0020003_64	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0020003_64	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0020003_64	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0020003_64	COG	COG0863	DNA modification methylase	NA
UHGV-0020003_64	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0020003_65	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0020003_65	Structural annotation	PF06530, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-0020003_66	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0020003_66	UniRef90	UniRef90_A0A3Q9RLP4	Deoxyuridine 5'-triphosphate nucleotidohydrolase family protein	NA
UHGV-0020003_66	eggNOG-mapper	1540091.A0A0A0RNF3_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0020003_66	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0020003_69	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0020003_69	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0020003_69	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0020003_70	UniRef90	UniRef90_A0A1C6DFA0	FAD-dependent thymidylate synthase	NA
UHGV-0020003_70	eggNOG-mapper	397290.C810_01371	NA	NA
UHGV-0020003_70	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0020003_70	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0020003_74	PHROG	phrog_38832	NA	unknown function
UHGV-0020003_74	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0020003_75	PHROG	phrog_4019	NA	unknown function

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0020003	Yes	42,620 bps	53.17%	100.00%	0.9829
UHGV-0012043	No	42,620 bps	53.17%	100.00%	0.9825
UHGV-0009059	No	43,722 bps	53.27%	99.90%	0.9829
UHGV-0022122	No	33,103 bps	53.55%	79.16%	0.9820
UHGV-1446591	No	26,889 bps	53.41%	63.77%	0.9822
UHGV-0023095	No	24,749 bps	53.27%	58.70%	0.9828
UHGV-0014039	No	22,480 bps	53.85%	54.17%	0.9823
UHGV-1349699	No	20,607 bps	52.62%	48.92%	0.9827
UHGV-1769169	No	15,553 bps	52.09%	36.97%	0.9824
UHGV-0195304	No	13,052 bps	52.34%	31.02%	0.9830
UHGV-0331203	No	11,636 bps	51.62%	27.66%	0.9833