vOTU-043130

Overview

vOTU representative UHGV-0019551

No. of genomes 1

Genome length 41,540 bps

Completeness 100.00% (complete)

Host Firmicutes A

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-043130
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00124 › vSUBFAM-00555 › vGENUS-02394 › vSUBGEN-11941 › vOTU-043130
Host taxonomy	Bacteria › Firmicutes A
Host range breadth	Phylum
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0019551
BioSample	SAMEA4766056
Genome length	41,540 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	73
CDS density	91.89%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0019551_1	PHROG	phrog_443	holin	lysis
UHGV-0019551_1	UniRef90	UniRef90_UPI0002E2AC7F	holin	NA
UHGV-0019551_1	eggNOG-mapper	610130.Closa_4157	Putative lactococcus lactis phage r1t holin	NA
UHGV-0019551_1	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0019551_1	Structural annotation	PF16945	NA	NA
UHGV-0019551_2	PHROG	phrog_21718	NA	unknown function
UHGV-0019551_2	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0019551_4	PHROG	phrog_16490	NA	unknown function
UHGV-0019551_4	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0019551_5	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0019551_8	KOfam	K14059	int; integrase	NA
UHGV-0019551_8	PHROG	phrog_1	integrase	integration and excision
UHGV-0019551_8	UniRef90	UniRef90_A0A845QLR8	Tyr recombinase domain-containing protein	NA
UHGV-0019551_8	eggNOG-mapper	936375.HMPREF1152_1040	Phage integrase family	NA
UHGV-0019551_8	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0019551_8	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0019551_8	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0019551_8	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0019551_9	UniRef90	UniRef90_A0A523STR4	Phospholipase D family protein	NA
UHGV-0019551_9	eggNOG-mapper	1235794.C811_00184	Fibronectin type III domain	NA
UHGV-0019551_9	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0019551_10	PHROG	phrog_20886	NA	unknown function
UHGV-0019551_10	UniRef90	UniRef90_UPI00164BB8FD	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0019551_10	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0019551_10	Structural annotation	PF06114	NA	NA
UHGV-0019551_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0019551_11	UniRef90	UniRef90_R7N2W9	DNA-binding helix-turn-helix protein	NA
UHGV-0019551_11	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0019551_11	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0019551_11	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0019551_11	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0019551_14	Structural annotation	PF21441, TIGR04176, COG1846	NA	NA
UHGV-0019551_15	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0019551_15	UniRef90	UniRef90_UPI00195F410A	helix-turn-helix domain-containing protein	NA
UHGV-0019551_15	eggNOG-mapper	12417.Q9T1J3_9CAUD	sequence-specific DNA binding	NA
UHGV-0019551_15	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0019551_15	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0019551_16	Structural annotation	NF040990	NA	NA
UHGV-0019551_18	UniRef90	UniRef90_UPI00137B29E5	glucosaminidase domain-containing protein	NA
UHGV-0019551_18	eggNOG-mapper	1122927.KB895419_gene2381	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0019551_18	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0019551_18	COG	COG3103	NA	NA
UHGV-0019551_18	Structural annotation	PF01832, NF038016, COG1705	NA	NA
UHGV-0019551_21	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0019551_21	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0019551_21	eggNOG-mapper	742767.HMPREF9456_02397	NA	NA
UHGV-0019551_21	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0019551_22	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0019551_22	UniRef90	UniRef90_UPI001CF8591D	YqaJ viral recombinase family protein	NA
UHGV-0019551_22	eggNOG-mapper	1430331.EP10_02380	YqaJ viral recombinase family	NA
UHGV-0019551_22	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0019551_22	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0019551_22	Structural annotation	PF10926, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0019551_23	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0019551_23	UniRef90	UniRef90_UPI001D07AE80	HNH endonuclease	NA
UHGV-0019551_23	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0019551_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0019551_24	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0019551_24	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0019551_24	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0019551_25	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0019551_25	UniRef90	UniRef90_R6WQA7	DnaD and phage-associated domain protein	NA
UHGV-0019551_25	eggNOG-mapper	608534.GCWU000341_02937	NA	NA
UHGV-0019551_25	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0019551_26	PHROG	phrog_9804	NA	unknown function
UHGV-0019551_26	UniRef90	UniRef90_A0A174S716	Inhibitor_G39P domain-containing protein	NA
UHGV-0019551_26	eggNOG-mapper	585394.RHOM_14005	Loader and inhibitor of phage G40P	NA
UHGV-0019551_26	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0019551_26	Structural annotation	PF11417	NA	NA
UHGV-0019551_27	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0019551_27	UniRef90	UniRef90_A0A1Y4NB13	MazG domain-containing protein	NA
UHGV-0019551_27	eggNOG-mapper	445972.ANACOL_02800	COG NOG14118 non supervised orthologous group	NA
UHGV-0019551_28	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0019551_28	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0019551_28	UniRef90	UniRef90_UPI001CF91680	single-stranded DNA-binding protein	NA
UHGV-0019551_28	eggNOG-mapper	883109.HMPREF0380_00268	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0019551_28	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0019551_28	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0019551_28	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0019551_28	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0019551_28	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0019551_30	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0019551_30	eggNOG-mapper	1280692.AUJL01000044_gene2344	NA	NA
UHGV-0019551_30	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0019551_33	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0019551_33	eggNOG-mapper	428127.EUBDOL_01513	NA	NA
UHGV-0019551_33	AcrCatalog	cluster_47493	NA	NA
UHGV-0019551_33	Structural annotation	PF00145, MF_00341, COG0270	NA	NA
UHGV-0019551_35	PHROG	phrog_22292	NA	unknown function
UHGV-0019551_36	PHROG	phrog_21026	NA	unknown function
UHGV-0019551_39	Structural annotation	PF06107, COG4481	NA	NA
UHGV-0019551_46	PHROG	phrog_1485	NA	unknown function
UHGV-0019551_46	UniRef90	UniRef90_A0A7W3SWM2	NA	NA
UHGV-0019551_46	eggNOG-mapper	1415774.U728_1099	NA	NA
UHGV-0019551_46	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-0019551_46	Structural annotation	PF07659	NA	NA
UHGV-0019551_49	Structural annotation	PF18066	NA	NA
UHGV-0019551_50	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0019551_52	Structural annotation	PF00181	NA	NA
UHGV-0019551_53	Structural annotation	PF17917	NA	NA
UHGV-0019551_54	PHROG	phrog_15863	NA	unknown function
UHGV-0019551_54	UniRef90	UniRef90_A0A1Y3R3M0	J domain-containing protein	NA
UHGV-0019551_54	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-0019551_54	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0019551_55	Structural annotation	NF040976	NA	NA
UHGV-0019551_58	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0019551_58	UniRef90	UniRef90_A0A845QMQ7	Terminase	NA
UHGV-0019551_58	eggNOG-mapper	755731.Clo1100_2438	TIGRFAM Phage	NA
UHGV-0019551_58	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0019551_58	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0019551_58	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0019551_58	COG	COG5362	Phage terminase large subunit	NA
UHGV-0019551_58	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0019551_60	PHROG	phrog_156	portal protein	head and packaging
UHGV-0019551_60	eggNOG-mapper	1232449.BAHV02000016_gene1822	NA	NA
UHGV-0019551_60	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0019551_62	PHROG	phrog_267	major head protein	head and packaging
UHGV-0019551_62	UniRef90	UniRef90_A0A7C6CNA9	P22 coat protein-protein 5 domain protein	NA
UHGV-0019551_62	eggNOG-mapper	665956.HMPREF1032_03906	P22 coat protein-protein 5 domain protein	NA
UHGV-0019551_62	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0019551_63	Structural annotation	PF07100, COG4288	NA	NA
UHGV-0019551_65	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0019551_65	eggNOG-mapper	693746.OBV_23870	NA	NA
UHGV-0019551_65	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0019551_66	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0019551_66	PHROG	phrog_819	tail protein	tail
UHGV-0019551_66	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0019551_67	eggNOG-mapper	756499.Desde_3162	nuclear chromosome segregation	NA
UHGV-0019551_67	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0019551_68	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0019551_68	Structural annotation	NF040910	NA	NA
UHGV-0019551_69	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-0019551_69	PHROG	phrog_18593	NA	unknown function
UHGV-0019551_69	UniRef90	UniRef90_R6RWR8	Carbohydrate binding domain protein	NA
UHGV-0019551_69	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0019551_69	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0019551_69	Structural annotation	PF14600	NA	NA
UHGV-0019551_70	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0019551_70	Structural annotation	TIGR02559	NA	NA
UHGV-0019551_71	PHROG	phrog_9854	NA	unknown function
UHGV-0019551_71	UniRef90	UniRef90_A0A0M2VQ64	LPD38 domain-containing protein	NA
UHGV-0019551_71	eggNOG-mapper	1121091.AUMP01000003_gene2597	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis	NA
UHGV-0019551_71	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0019551_71	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0019551_71	Structural annotation	PF18857, PF18798	NA	NA
UHGV-0019551_72	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0019551_72	PHROG	phrog_894	endolysin	lysis
UHGV-0019551_72	UniRef90	UniRef90_A0A1D8GIJ0	Peptidase_M15_3 domain-containing protein	NA
UHGV-0019551_72	eggNOG-mapper	1121289.JHVL01000011_gene1405	Peptidase M15A	NA
UHGV-0019551_72	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0019551_72	COG	COG3108	NA	NA
UHGV-0019551_72	Structural annotation	PF08291, COG3108	NA	NA
UHGV-0019551_73	PHROG	phrog_4105	NA	unknown function

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0019551	Yes	41,540 bps	40.50%	100.00%	0.9728