vOTU-044119

Overview

No. of genomes 13

Genome length 35,815 bps

Completeness 100.00% (complete)

Host CAG-475 sp900550855

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-044119
Number of genomes	13
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00153 › vSUBFAM-06999 › vGENUS-18694 › vSUBGEN-35655 › vOTU-044119
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Christensenellales › CAG-917 › CAG-475 › CAG-475 sp900550855
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0031140
BioSample	SAMEA4765661
Genome length	35,815 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	54
CDS density	95.63%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0031140_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0031140_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0031140_1	UniRef90	UniRef90_A5TXM5	Possible recombinase	NA
UHGV-0031140_1	eggNOG-mapper	393480.FNP_1879	Recombinase zinc beta ribbon domain	NA
UHGV-0031140_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0031140_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0031140_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0031140_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0031140_1	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0031140_2	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0031140_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0031140_2	UniRef90	UniRef90_UPI000951BB51	helix-turn-helix domain-containing protein	NA
UHGV-0031140_2	eggNOG-mapper	742733.HMPREF9469_00292	Helix-turn-helix XRE-family like proteins	NA
UHGV-0031140_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0031140_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0031140_3	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0031140_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0031140_3	UniRef90	UniRef90_A0A355V480	HTH cro/C1-type domain-containing protein	NA
UHGV-0031140_3	eggNOG-mapper	997830.HMPREF1124_0205	transcriptional	NA
UHGV-0031140_3	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0031140_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0031140_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0031140_10	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0031140_10	eggNOG-mapper	552396.HMPREF0863_02432	NA	NA
UHGV-0031140_11	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0031140_11	UniRef90	UniRef90_UPI0004648050	HNH endonuclease	NA
UHGV-0031140_11	eggNOG-mapper	696281.Desru_1079	HNH endonuclease	NA
UHGV-0031140_11	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0031140_13	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0031140_13	UniRef90	UniRef90_UPI0018CC28AD	DnaD domain protein	NA
UHGV-0031140_13	eggNOG-mapper	718252.FP2_01000	NA	NA
UHGV-0031140_13	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0031140_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0031140_19	PHROG	phrog_8684	NA	unknown function
UHGV-0031140_19	Pfam	PF09643	YopX protein	YopX
UHGV-0031140_20	PHROG	phrog_3136	NA	unknown function
UHGV-0031140_20	UniRef90	UniRef90_UPI001C02A61B	ASCH domain-containing protein	NA
UHGV-0031140_20	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0031140_20	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0031140_20	Structural annotation	PF12961, NF008917, COG4933	NA	NA
UHGV-0031140_22	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0031140_22	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0031140_22	UniRef90	UniRef90_A0A1F0ZPT3	Methyltransferase	NA
UHGV-0031140_22	eggNOG-mapper	482234.SCAZ3_10320	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0031140_22	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0031140_22	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0031140_22	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0031140_22	COG	COG0863	DNA modification methylase	NA
UHGV-0031140_22	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0031140_23	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0031140_23	UniRef90	UniRef90_A0A1T4M0N5	HNH endonuclease	NA
UHGV-0031140_23	eggNOG-mapper	1089548.KI783301_gene3222	HNH endonuclease	NA
UHGV-0031140_23	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0031140_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0031140_24	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0031140_24	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0031140_24	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0031140_24	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0031140_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0031140_25	UniRef90	UniRef90_UPI00141516AC	terminase large subunit	NA
UHGV-0031140_25	eggNOG-mapper	471855.Shel_08190	Phage Terminase	NA
UHGV-0031140_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0031140_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0031140_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0031140_25	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0031140_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-0031140_26	UniRef90	UniRef90_J7YGM3	HK97 family phage portal protein	NA
UHGV-0031140_26	eggNOG-mapper	1443122.Z958_05975	Portal protein	NA
UHGV-0031140_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0031140_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0031140_26	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0031140_27	KOfam	K06904	NA	NA
UHGV-0031140_27	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0031140_27	UniRef90	UniRef90_A0A3C0IZ06	HK97 family phage prohead protease	NA
UHGV-0031140_27	eggNOG-mapper	1232428.CAVO010000003_gene1010	Caudovirus prohead serine protease	NA
UHGV-0031140_27	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0031140_27	COG	COG3740	Phage head maturation protease	NA
UHGV-0031140_27	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0031140_28	PHROG	phrog_10	major head protein	head and packaging
UHGV-0031140_28	UniRef90	UniRef90_A0A356CXS9	Phage major capsid protein	NA
UHGV-0031140_28	eggNOG-mapper	1160721.RBI_I01582	Phage capsid family	NA
UHGV-0031140_28	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0031140_28	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0031140_28	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0031140_28	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0031140_30	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0031140_30	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0031140_35	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0031140_36	PHROG	phrog_8125	tail length tape measure protein	tail
UHGV-0031140_36	UniRef90	UniRef90_V9HUK2	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0031140_36	eggNOG-mapper	441768.ACL_0619	phage tail tape measure protein	NA
UHGV-0031140_36	COG	COG4372	NA	NA
UHGV-0031140_36	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0031140_37	Structural annotation	PF16774, PF21766, TIGR01633, COG4722	NA	NA
UHGV-0031140_38	PHROG	phrog_7064	tail protein	tail
UHGV-0031140_38	eggNOG-mapper	1140001.I571_01167	NA	NA
UHGV-0031140_38	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0031140_46	PHROG	phrog_5302	tail protein	tail
UHGV-0031140_46	UniRef90	UniRef90_UPI001951D0C2	fibronectin type III domain-containing protein	NA
UHGV-0031140_46	eggNOG-mapper	1243664.CAVL020000054_gene3009	NA	NA
UHGV-0031140_46	Structural annotation	PF14686, TIGR03000, COG1262	NA	NA
UHGV-0031140_47	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0031140_47	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0031140_47	UniRef90	UniRef90_A0A1Q6RLC1	Reverse transcriptase domain-containing protein	NA
UHGV-0031140_47	eggNOG-mapper	755164.D6PSR5_9CAUD	RNA-directed DNA polymerase activity	NA
UHGV-0031140_47	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0031140_47	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0031140_47	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0031140_54	Structural annotation	PF10723, NF040976	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0031140	Yes	35,815 bps	48.14%	100.00%	0.9709
UHGV-0029921	No	36,300 bps	48.03%	99.90%	0.9719
UHGV-0028484	No	31,815 bps	48.19%	89.45%	0.9699
UHGV-0034254	No	31,085 bps	48.13%	88.63%	0.9718
UHGV-1506093	No	28,550 bps	47.75%	80.20%	0.9704
UHGV-0187677	No	26,507 bps	47.26%	73.05%	0.9699
UHGV-1487722	No	26,398 bps	47.28%	72.76%	0.9729
UHGV-0029358	No	24,621 bps	48.10%	72.30%	0.9731
UHGV-0005947	No	25,591 bps	47.57%	70.59%	0.9751
UHGV-0032557	No	20,984 bps	48.21%	64.95%	0.9703
UHGV-0322543	No	20,929 bps	48.17%	64.76%	0.9677
UHGV-0132847	No	37,105 bps	47.93%	49.67%	0.9705
UHGV-0050075	No	28,550 bps	47.75%	38.22%	0.9396