vOTU-044181

Overview

vOTU representative UHGV-0031939

No. of genomes 7

Genome length 42,770 bps

Completeness 100.00% (complete)

Host Oscillospirales

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-044181
Number of genomes	7
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 › vSUBFAM-05945 › vGENUS-14034 › vSUBGEN-23182 › vOTU-044181
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales
Host range breadth	Order
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0031939
BioSample	NA
Genome length	42,770 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	65
CDS density	91.16%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0031939_3	Structural annotation	PF18300, NF000331, COG4568	NA	NA
UHGV-0031939_4	PHROG	phrog_22543	NA	unknown function
UHGV-0031939_5	PHROG	phrog_22543	NA	unknown function
UHGV-0031939_9	PHROG	phrog_474	phosphofructokinase	other
UHGV-0031939_9	UniRef90	UniRef90_A0A7V6W4J9	NA	NA
UHGV-0031939_9	eggNOG-mapper	665956.HMPREF1032_00639	NA	NA
UHGV-0031939_9	Pfam	PF19905	NA	DUF6378
UHGV-0031939_10	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0031939_10	UniRef90	UniRef90_A0A410PWY9	Nucleotide pyrophosphohydrolase	NA
UHGV-0031939_10	eggNOG-mapper	665956.HMPREF1032_00660	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0031939_10	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0031939_10	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0031939_10	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-0031939_14	UniRef90	UniRef90_A0A8D9PDT2	Brinker DNA-binding domain protein	NA
UHGV-0031939_14	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0031939_14	Structural annotation	PF13542	NA	NA
UHGV-0031939_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0031939_15	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0031939_15	UniRef90	UniRef90_UPI001D0245C4	terminase family protein	NA
UHGV-0031939_15	eggNOG-mapper	411483.FAEPRAA2165_01044	Terminase-like family	NA
UHGV-0031939_15	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0031939_15	COG	COG1783	Phage terminase large subunit	NA
UHGV-0031939_15	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0031939_16	PHROG	phrog_156	portal protein	head and packaging
UHGV-0031939_16	UniRef90	UniRef90_A0A8D9UH10	Portal protein	NA
UHGV-0031939_16	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-0031939_16	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0031939_17	UniRef90	UniRef90_UPI001D021C93	ribosomal-processing cysteine protease Prp	NA
UHGV-0031939_17	Structural annotation	NF011128, COG2868	NA	NA
UHGV-0031939_18	PHROG	phrog_13908	NA	unknown function
UHGV-0031939_18	UniRef90	UniRef90_UPI0012DFC3C8	ribosomal-processing cysteine protease Prp	NA
UHGV-0031939_18	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0031939_19	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0031939_19	UniRef90	UniRef90_A0A1Y4WLZ7	N4-gp56 family major capsid protein	NA
UHGV-0031939_19	eggNOG-mapper	1203606.HMPREF1526_02746	NA	NA
UHGV-0031939_19	Pfam	PF13252	NA	DUF4043
UHGV-0031939_19	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0031939_19	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0031939_20	PHROG	phrog_15239	NA	unknown function
UHGV-0031939_21	KOfam	K16617	COL13A; collagen type XIII alpha	NA
UHGV-0031939_21	PHROG	phrog_819	tail protein	tail
UHGV-0031939_21	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0031939_22	PHROG	phrog_12105	NA	unknown function
UHGV-0031939_22	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0031939_23	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0031939_23	UniRef90	UniRef90_A0A8D9UH72	Stabilization protein (Fragment)	NA
UHGV-0031939_23	eggNOG-mapper	1519439.JPJG01000060_gene1903	NA	NA
UHGV-0031939_23	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0031939_25	eggNOG-mapper	1226322.HMPREF1545_00786	NA	NA
UHGV-0031939_26	PHROG	phrog_22978	NA	unknown function
UHGV-0031939_26	UniRef90	UniRef90_A0A1Y4WLF7	PBECR5 domain-containing protein	NA
UHGV-0031939_26	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0031939_26	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0031939_27	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0031939_27	PHROG	phrog_18955	NA	unknown function
UHGV-0031939_27	UniRef90	UniRef90_A0A1C7FQI4	MurNAc-LAA domain-containing protein	NA
UHGV-0031939_27	eggNOG-mapper	1226322.HMPREF1545_00782	NA	NA
UHGV-0031939_27	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0031939_27	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0031939_27	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0031939_27	Structural annotation	PF01520, PF09992, MF_00417, TIGR02883, COG0860, COG4632	NA	NA
UHGV-0031939_28	PHROG	phrog_1129	holin	lysis
UHGV-0031939_28	UniRef90	UniRef90_A0A1M5CY75	Phage holin family Hol44, holin superfamily V	NA
UHGV-0031939_28	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-0031939_28	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0031939_28	Structural annotation	PF06946	NA	NA
UHGV-0031939_29	PHROG	phrog_1863	NA	unknown function
UHGV-0031939_29	eggNOG-mapper	1235797.C816_02840	NA	NA
UHGV-0031939_30	UniRef90	UniRef90_A0A1C6JAI6	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0031939_30	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0031939_31	PHROG	phrog_3754	NA	unknown function
UHGV-0031939_31	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0031939_32	PHROG	phrog_21718	NA	unknown function
UHGV-0031939_32	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0031939_33	PHROG	phrog_22984	NA	unknown function
UHGV-0031939_34	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0031939_34	UniRef90	UniRef90_UPI00104E996D	NUMOD4 domain-containing protein	NA
UHGV-0031939_34	eggNOG-mapper	767806.D7PQ37_9CAUD	HNH endonuclease	NA
UHGV-0031939_34	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0031939_34	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0031939_34	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0031939_34	Structural annotation	PF07463, PF07453	NA	NA
UHGV-0031939_35	PHROG	phrog_16490	NA	unknown function
UHGV-0031939_35	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0031939_36	PHROG	phrog_20016	NA	unknown function
UHGV-0031939_36	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0031939_36	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0031939_36	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0031939_37	Structural annotation	PF12510	NA	NA
UHGV-0031939_38	KOfam	K14059	int; integrase	NA
UHGV-0031939_38	PHROG	phrog_1	integrase	integration and excision
UHGV-0031939_38	UniRef90	UniRef90_UPI001959BD31	site-specific integrase	NA
UHGV-0031939_38	eggNOG-mapper	1378168.N510_03298	Belongs to the 'phage' integrase family	NA
UHGV-0031939_38	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0031939_38	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0031939_38	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0031939_39	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0031939_39	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0031939_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0031939_39	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0031939_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0031939_41	Structural annotation	NF007257, COG1396	NA	NA
UHGV-0031939_43	UniRef90	UniRef90_UPI001D011E8C	XRE family transcriptional regulator	NA
UHGV-0031939_43	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0031939_43	Structural annotation	TIGR03070	NA	NA
UHGV-0031939_44	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0031939_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0031939_44	UniRef90	UniRef90_A0A810QCI5	HTH cro/C1-type domain-containing protein	NA
UHGV-0031939_44	eggNOG-mapper	411467.BACCAP_01078	Helix-turn-helix XRE-family like proteins	NA
UHGV-0031939_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0031939_44	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0031939_44	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0031939_47	eggNOG-mapper	742738.HMPREF9460_00848	NA	NA
UHGV-0031939_51	PHROG	phrog_14970	NA	unknown function
UHGV-0031939_51	UniRef90	UniRef90_UPI00164BFA28	Rad52/Rad22 family DNA repair protein	NA
UHGV-0031939_51	eggNOG-mapper	1410632.JHWW01000001_gene1266	double-strand break repair protein	NA
UHGV-0031939_51	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0031939_51	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0031939_51	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0031939_52	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0031939_52	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0031939_52	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0031939_52	Structural annotation	PF05772	NA	NA
UHGV-0031939_53	PHROG	phrog_7566	NA	unknown function
UHGV-0031939_53	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-0031939_54	UniRef90	UniRef90_A0A3A8YWT9	DNA-binding protein	NA
UHGV-0031939_54	eggNOG-mapper	877414.ATWA01000139_gene1368	NA	NA
UHGV-0031939_55	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0031939_55	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0031939_57	UniRef90	UniRef90_UPI001F4CC127	helix-turn-helix domain-containing protein	NA
UHGV-0031939_57	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0031939_58	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0031939_58	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0031939_58	UniRef90	UniRef90_A0A352RPR0	Single-stranded DNA-binding protein	NA
UHGV-0031939_58	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-0031939_58	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0031939_58	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0031939_58	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0031939_58	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0031939_58	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0031939_59	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0031939_59	UniRef90	UniRef90_A0A1C6J8D5	NA	NA
UHGV-0031939_59	Pfam	PF19808	NA	DUF6291
UHGV-0031939_59	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0031939_59	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0031939_59	Structural annotation	PF19808	NA	NA
UHGV-0031939_61	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0031939_61	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0031939_61	UniRef90	UniRef90_F3ZZF2	Endodeoxyribonuclease RusA	NA
UHGV-0031939_61	eggNOG-mapper	697281.Mahau_0558	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0031939_61	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0031939_61	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0031939_62	UniRef90	UniRef90_UPI0010317C51	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0031939_62	eggNOG-mapper	552398.HMPREF0866_04581	Putative helix-turn-helix protein, YlxM / p13 like	NA
UHGV-0031939_62	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0031939_64	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0031939_64	UniRef90	UniRef90_A0A6N9P5P7	Adenine methyltransferase	NA
UHGV-0031939_64	eggNOG-mapper	445972.ANACOL_03344	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0031939_64	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0031939_64	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0031939_64	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-0031939_65	PHROG	phrog_14105	NA	unknown function
UHGV-0031939_65	eggNOG-mapper	526218.Sterm_0811	dextransucrase activity	NA
UHGV-0031939_65	COG	COG5263	Glucan-binding domain (YG repeat)	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0031939	Yes	42,770 bps	56.28%	100.00%	0.9800
UHGV-0039407	No	43,459 bps	56.52%	99.90%	0.9807
UHGV-0037238	No	42,786 bps	56.29%	99.90%	0.9813
UHGV-0032544	No	35,836 bps	56.45%	84.63%	0.9814
UHGV-0031044	No	31,318 bps	56.46%	75.13%	0.9821
UHGV-0004694	No	30,514 bps	56.74%	71.60%	0.9822
UHGV-0024043	No	25,484 bps	56.88%	61.14%	0.9819