vOTU-046320

Overview

vOTU representative UHGV-0162034

No. of genomes 3

Genome length 39,243 bps

Completeness 100.00% (complete)

Host Ruminiclostridium E siraeum

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-046320
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00026 › vSUBFAM-05780 › vGENUS-13306 › vSUBGEN-21263 › vOTU-046320
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Ruminiclostridium E › Ruminiclostridium E siraeum
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0162034
BioSample	NA
Genome length	39,243 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	61
CDS density	90.51%
tRNA count	1
Integrase	Yes
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0162034_3	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0162034_4	PHROG	phrog_1033	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0162034_4	UniRef90	UniRef90_UPI0013716616	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0162034_4	eggNOG-mapper	1042156.CXIVA_10310	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0162034_4	Pfam	PF20188	NA	DUF6551
UHGV-0162034_4	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0162034_4	Structural annotation	PF20188, MF_02015, TIGR03233, COG1475	NA	NA
UHGV-0162034_5	UniRef90	UniRef90_A0A062V2J7	Type II methyltransferase	NA
UHGV-0162034_5	eggNOG-mapper	556268.OFAG_00835	transposase activity	NA
UHGV-0162034_5	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0162034_10	COG	COG4961	Flp pilus assembly protein TadG, includes N-terminal TadE domain	NA
UHGV-0162034_12	eggNOG-mapper	1218352.B597_019535	NA	NA
UHGV-0162034_13	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0162034_13	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0162034_13	UniRef90	UniRef90_A0A412AV81	XRE family transcriptional regulator	NA
UHGV-0162034_13	eggNOG-mapper	1203606.HMPREF1526_01317	Helix-turn-helix XRE-family like proteins	NA
UHGV-0162034_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0162034_13	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0162034_13	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0162034_15	PHROG	phrog_14556	NA	unknown function
UHGV-0162034_15	eggNOG-mapper	537013.CLOSTMETH_01698	NA	NA
UHGV-0162034_17	PHROG	phrog_5783	NA	unknown function
UHGV-0162034_17	UniRef90	UniRef90_A0A351HU33	Nuclease	NA
UHGV-0162034_17	eggNOG-mapper	445971.ANASTE_00686	NYN domain	NA
UHGV-0162034_17	Pfam	PF01936	NYN domain	NYN
UHGV-0162034_17	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0162034_17	Structural annotation	PF01936, MF_04140, TIGR00288, COG1432	NA	NA
UHGV-0162034_18	KOfam	K14059	int; integrase	NA
UHGV-0162034_18	PHROG	phrog_1	integrase	integration and excision
UHGV-0162034_18	UniRef90	UniRef90_A0A1C5SM44	Tyrosine recombinase XerC	NA
UHGV-0162034_18	eggNOG-mapper	1235797.C816_00779	Phage integrase family	NA
UHGV-0162034_18	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0162034_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0162034_18	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0162034_18	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0162034_19	eggNOG-mapper	445974.CLORAM_00782	NA	NA
UHGV-0162034_20	PHROG	phrog_10390	NA	unknown function
UHGV-0162034_20	UniRef90	UniRef90_A0A374AHH0	NA	NA
UHGV-0162034_20	eggNOG-mapper	1123312.KB904580_gene854	NA	NA
UHGV-0162034_20	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0162034_20	COG	COG3600	NA	NA
UHGV-0162034_21	eggNOG-mapper	1173029.JH980292_gene3351	NA	NA
UHGV-0162034_22	PHROG	phrog_20258	NA	unknown function
UHGV-0162034_22	eggNOG-mapper	665956.HMPREF1032_02710	NA	NA
UHGV-0162034_23	PHROG	phrog_4105	NA	unknown function
UHGV-0162034_23	eggNOG-mapper	1291050.JAGE01000001_gene433	NA	NA
UHGV-0162034_24	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0162034_24	PHROG	phrog_15001	endolysin	lysis
UHGV-0162034_24	UniRef90	UniRef90_R6GU62	Sporulation domain-containing protein	NA
UHGV-0162034_24	eggNOG-mapper	552398.HMPREF0866_01156	Ami_2	NA
UHGV-0162034_24	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0162034_24	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0162034_25	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0162034_25	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0162034_25	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0162034_26	PHROG	phrog_1220	head protein	head and packaging
UHGV-0162034_26	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0162034_27	PHROG	phrog_538	minor tail protein	tail
UHGV-0162034_27	UniRef90	UniRef90_UPI0006819EEC	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0162034_27	eggNOG-mapper	742738.HMPREF9460_04080	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0162034_27	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0162034_27	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0162034_28	COG	COG4722	Phage-related protein YomH	NA
UHGV-0162034_28	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0162034_29	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0162034_29	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0162034_29	UniRef90	UniRef90_A0A316QT16	Phage tail tape measure protein	NA
UHGV-0162034_29	eggNOG-mapper	742738.HMPREF9460_04078	domain protein	NA
UHGV-0162034_29	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0162034_29	Structural annotation	PF20155, MF_04138, TIGR01760, COG3941	NA	NA
UHGV-0162034_31	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0162034_32	UniRef90	UniRef90_UPI0002E70852	HK97 gp10 family phage protein	NA
UHGV-0162034_32	eggNOG-mapper	1211814.CAPG01000074_gene3450	NA	NA
UHGV-0162034_32	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0162034_32	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0162034_34	PHROG	phrog_25	head closure Hc1	connector
UHGV-0162034_34	UniRef90	UniRef90_H2JEP2	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0162034_34	eggNOG-mapper	755731.Clo1100_1167	Phage head-tail joining protein	NA
UHGV-0162034_34	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0162034_34	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0162034_34	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0162034_35	UniRef90	UniRef90_UPI001C01C9EA	head-tail connector protein	NA
UHGV-0162034_35	eggNOG-mapper	632245.CLP_2916	Phage gp6-like head-tail connector protein	NA
UHGV-0162034_35	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0162034_35	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0162034_35	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0162034_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-0162034_36	UniRef90	UniRef90_UPI0009511B79	phage major capsid protein	NA
UHGV-0162034_36	eggNOG-mapper	397288.C806_00073	phage major capsid protein, HK97 family	NA
UHGV-0162034_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0162034_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0162034_36	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0162034_36	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0162034_37	KOfam	K06904	NA	NA
UHGV-0162034_37	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0162034_37	UniRef90	UniRef90_UPI0018A08760	HK97 family phage prohead protease	NA
UHGV-0162034_37	eggNOG-mapper	1304866.K413DRAFT_1224	Phage prohead protease, HK97 family	NA
UHGV-0162034_37	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0162034_37	COG	COG3740	Phage head maturation protease	NA
UHGV-0162034_37	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0162034_39	PHROG	phrog_12	portal protein	head and packaging
UHGV-0162034_39	UniRef90	UniRef90_UPI0018989A28	phage portal protein	NA
UHGV-0162034_39	eggNOG-mapper	397288.C806_00075	Portal protein	NA
UHGV-0162034_39	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0162034_39	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0162034_39	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0162034_40	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0162034_40	UniRef90	UniRef90_UPI00082E9F54	terminase large subunit	NA
UHGV-0162034_40	eggNOG-mapper	742738.HMPREF9460_01363	Phage Terminase	NA
UHGV-0162034_40	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0162034_40	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0162034_40	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0162034_40	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0162034_41	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0162034_41	UniRef90	UniRef90_UPI0018A0AFF9	P27 family phage terminase small subunit	NA
UHGV-0162034_41	eggNOG-mapper	742738.HMPREF9460_01362	phage terminase small subunit	NA
UHGV-0162034_41	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0162034_41	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0162034_41	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0162034_42	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0162034_42	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0162034_42	UniRef90	UniRef90_A0A373VSA3	HNH endonuclease	NA
UHGV-0162034_42	eggNOG-mapper	1423755.BAML01000004_gene389	HNH nucleases	NA
UHGV-0162034_42	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0162034_42	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0162034_43	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0162034_43	UniRef90	UniRef90_UPI00082C1C00	NA	NA
UHGV-0162034_43	eggNOG-mapper	556263.FSEG_01048	NA	NA
UHGV-0162034_43	Pfam	PF14359	NA	DUF4406
UHGV-0162034_43	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0162034_44	PHROG	phrog_7339	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0162034_44	UniRef90	UniRef90_A0A8F2F0X6	Metallophosphoesterase	NA
UHGV-0162034_44	eggNOG-mapper	1150474.JQJI01000006_gene784	metallophosphoesterase	NA
UHGV-0162034_44	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0162034_44	COG	COG1408	Predicted phosphohydrolase, MPP superfamily	NA
UHGV-0162034_44	Structural annotation	PF12850, MF_00325, NF003118, COG1311	NA	NA
UHGV-0162034_45	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0162034_45	UniRef90	UniRef90_A0A7X7SYD5	RNA polymerase subunit sigma-24	NA
UHGV-0162034_45	Structural annotation	PF02996	NA	NA
UHGV-0162034_50	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0162034_50	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0162034_50	UniRef90	UniRef90_A0A2U1CFM2	Methyltransferase	NA
UHGV-0162034_50	eggNOG-mapper	1449342.JQMR01000001_gene1025	DNA modification methylase DNA replication, recombination, and repair	NA
UHGV-0162034_50	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0162034_50	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0162034_50	COG	COG0863	DNA modification methylase	NA
UHGV-0162034_50	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0162034_51	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0162034_51	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0162034_51	UniRef90	UniRef90_A0A7X1IAL0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0162034_51	eggNOG-mapper	697281.Mahau_0558	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0162034_51	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0162034_51	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0162034_51	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0162034_52	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0162034_52	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0162034_52	UniRef90	UniRef90_A0A6S6XI86	Single-stranded DNA-binding protein	NA
UHGV-0162034_52	eggNOG-mapper	1105031.HMPREF1141_2832	Single-stranded DNA-binding protein	NA
UHGV-0162034_52	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0162034_52	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0162034_52	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0162034_52	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0162034_52	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0162034_53	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0162034_53	UniRef90	UniRef90_A0A1C6GFP7	NA	NA
UHGV-0162034_53	eggNOG-mapper	1196322.A370_04251	NA	NA
UHGV-0162034_53	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0162034_53	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0162034_53	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-0162034_55	PHROG	phrog_1389	NA	unknown function
UHGV-0162034_55	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0162034_55	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0162034_56	PHROG	phrog_7566	NA	unknown function
UHGV-0162034_56	eggNOG-mapper	508419.F8J187_9CAUD	NA	NA
UHGV-0162034_57	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0162034_57	UniRef90	UniRef90_A0A1C6J8G0	ERF superfamily	NA
UHGV-0162034_57	eggNOG-mapper	1268072.PSAB_05935	ERF superfamily	NA
UHGV-0162034_57	Pfam	PF04404	ERF superfamily	ERF
UHGV-0162034_57	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0162034_58	Structural annotation	PF00412	NA	NA
UHGV-0162034_60	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0162034_60	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0162034_61	KOfam	K13023	CPN2; carboxypeptidase N regulatory subunit	NA
UHGV-0162034_61	eggNOG-mapper	563031.HMPREF0666_01114	NA	NA
UHGV-0162034_61	Pfam	PF00560	Leucine Rich Repeat	LRR_1

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0162034	Yes	39,243 bps	47.59%	100.00%	0.9725
UHGV-1490020	No	39,224 bps	47.59%	99.90%	0.9732
UHGV-1348819	No	18,572 bps	48.83%	52.75%	0.9796