vOTU-047126

Overview

vOTU representative UHGV-0190633

No. of genomes 14

Genome length 39,034 bps

Completeness 100.00% (complete)

Host Ruminococcus C sp000433635

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-047126
Number of genomes	14
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00001 › vSUBFAM-00902 › vGENUS-00808 › vSUBGEN-04813 › vOTU-047126
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Ruminococcus C › Ruminococcus C sp000433635
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0190633
BioSample	SAMEA2737733
Genome length	39,034 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	62
CDS density	91.71%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0190633_1	PHROG	phrog_4105	NA	unknown function
UHGV-0190633_1	eggNOG-mapper	592026.GCWU0000282_003290	NA	NA
UHGV-0190633_2	PHROG	phrog_443	holin	lysis
UHGV-0190633_2	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-0190633_2	eggNOG-mapper	1298920.KI911353_gene2669	Putative lactococcus lactis phage r1t holin	NA
UHGV-0190633_2	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0190633_2	Structural annotation	PF16945	NA	NA
UHGV-0190633_3	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0190633_3	UniRef90	UniRef90_UPI001D0763F2	helix-turn-helix transcriptional regulator	NA
UHGV-0190633_3	eggNOG-mapper	1304866.K413DRAFT_0788	Helix-turn-helix XRE-family like proteins	NA
UHGV-0190633_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190633_3	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0190633_5	KOfam	K07273	acm; lysozyme	NA
UHGV-0190633_5	PHROG	phrog_291	endolysin	lysis
UHGV-0190633_5	UniRef90	UniRef90_A0A3D5KVU8	Peptidase_M15_3 domain-containing protein	NA
UHGV-0190633_5	eggNOG-mapper	1341157.RF007C_02545	hydrolase, family 25	NA
UHGV-0190633_5	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0190633_5	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0190633_5	COG	COG3108	NA	NA
UHGV-0190633_5	Structural annotation	PF01183, PF08291, NF007557, COG3757, COG3108	NA	NA
UHGV-0190633_6	KOfam	K14059	int; integrase	NA
UHGV-0190633_6	PHROG	phrog_1	integrase	integration and excision
UHGV-0190633_6	UniRef90	UniRef90_UPI0005D1DBC9	site-specific integrase	NA
UHGV-0190633_6	eggNOG-mapper	1514668.JOOA01000001_gene242	Phage integrase family	NA
UHGV-0190633_6	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0190633_6	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0190633_6	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0190633_7	PHROG	phrog_1914	NA	unknown function
UHGV-0190633_7	UniRef90	UniRef90_R7FBB0	Putative toxin-antitoxin system toxin component	NA
UHGV-0190633_7	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0190633_7	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0190633_7	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0190633_7	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0190633_8	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0190633_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0190633_8	UniRef90	UniRef90_A0A352TI41	HTH cro/C1-type domain-containing protein	NA
UHGV-0190633_8	eggNOG-mapper	1121085.AUCI01000010_gene502	Helix-turn-helix XRE-family like proteins	NA
UHGV-0190633_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0190633_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0190633_8	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0190633_9	PHROG	phrog_17486	NA	unknown function
UHGV-0190633_9	Structural annotation	PF04314, NF041740, COG2847	NA	NA
UHGV-0190633_10	Structural annotation	NF040556	NA	NA
UHGV-0190633_12	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0190633_12	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0190633_12	UniRef90	UniRef90_R5ANG2	Phage antirepressor protein	NA
UHGV-0190633_12	eggNOG-mapper	696281.Desru_3569	BRO family, N-terminal domain	NA
UHGV-0190633_12	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0190633_12	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0190633_12	COG	COG3617	Prophage antirepressor	NA
UHGV-0190633_12	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0190633_14	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0190633_14	UniRef90	UniRef90_A0A2S7ZGS0	Replisome organizer	NA
UHGV-0190633_14	eggNOG-mapper	706433.HMPREF9430_01161	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0190633_14	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0190633_14	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0190633_14	Structural annotation	PF09681, PF09524, TIGR01714, TIGR02220, COG0640	NA	NA
UHGV-0190633_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0190633_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0190633_18	UniRef90	UniRef90_R5VJF6	Single-stranded DNA-binding protein	NA
UHGV-0190633_18	eggNOG-mapper	411473.RUMCAL_03263	Single-stranded DNA-binding protein	NA
UHGV-0190633_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0190633_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0190633_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0190633_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0190633_20	Structural annotation	PF10372	NA	NA
UHGV-0190633_25	PHROG	phrog_31911	NA	unknown function
UHGV-0190633_25	eggNOG-mapper	1120980.JQKH01000028_gene1713	NA	NA
UHGV-0190633_26	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0190633_26	PHROG	phrog_5696	NA	unknown function
UHGV-0190633_26	UniRef90	UniRef90_A0A1C5WE14	Type I restriction-modification system methyltransferase subunit	NA
UHGV-0190633_26	eggNOG-mapper	948106.AWZT01000012_gene1459	N-6 DNA Methylase	NA
UHGV-0190633_26	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0190633_26	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0190633_26	Structural annotation	COG0286	NA	NA
UHGV-0190633_27	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0190633_27	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0190633_30	PHROG	phrog_24490	NA	unknown function
UHGV-0190633_36	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0190633_36	UniRef90	UniRef90_UPI001D064C11	Lar family restriction alleviation protein	NA
UHGV-0190633_36	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0190633_36	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0190633_36	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0190633_36	Structural annotation	PF14354, NF007260, COG4888	NA	NA
UHGV-0190633_37	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0190633_37	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0190633_37	UniRef90	UniRef90_A0A3D4KZM8	PAPS_reduct domain-containing protein	NA
UHGV-0190633_37	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-0190633_37	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0190633_37	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0190633_37	Structural annotation	PF01507, MF_00063, TIGR00434, COG0175	NA	NA
UHGV-0190633_39	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0190633_39	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0190633_39	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-0190633_40	Structural annotation	PF13613	NA	NA
UHGV-0190633_41	PHROG	phrog_824	NA	unknown function
UHGV-0190633_41	UniRef90	UniRef90_R7GUQ9	VRR-NUC domain-containing protein	NA
UHGV-0190633_41	eggNOG-mapper	742738.HMPREF9460_02501	VRR_NUC	NA
UHGV-0190633_41	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0190633_41	Structural annotation	PF08774	NA	NA
UHGV-0190633_42	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0190633_43	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0190633_43	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0190633_43	UniRef90	UniRef90_UPI001D08E9BA	terminase small subunit	NA
UHGV-0190633_43	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-0190633_43	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0190633_43	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0190633_43	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0190633_44	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0190633_44	UniRef90	UniRef90_A0A6N2W7C0	HNH endonuclease	NA
UHGV-0190633_44	eggNOG-mapper	1123288.SOV_2c03680	adenylate kinase activity	NA
UHGV-0190633_44	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0190633_44	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0190633_44	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0190633_45	PHROG	phrog_1066	NA	unknown function
UHGV-0190633_46	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0190633_46	UniRef90	UniRef90_R7FEF5	Terminase	NA
UHGV-0190633_46	eggNOG-mapper	642492.Clole_1855	Phage terminase-like protein large subunit	NA
UHGV-0190633_46	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0190633_46	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0190633_46	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0190633_46	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0190633_47	PHROG	phrog_12	portal protein	head and packaging
UHGV-0190633_47	UniRef90	UniRef90_R7FBP4	HK97 family phage portal protein	NA
UHGV-0190633_47	eggNOG-mapper	1157490.EL26_20720	Phage portal protein	NA
UHGV-0190633_47	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0190633_47	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0190633_47	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0190633_48	Structural annotation	PF20010	NA	NA
UHGV-0190633_49	PHROG	phrog_25979	NA	unknown function
UHGV-0190633_49	eggNOG-mapper	411473.RUMCAL_02827	alpha-ribazole phosphatase activity	NA
UHGV-0190633_49	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0190633_49	COG	COG0406	Broad specificity phosphatase PhoE	NA
UHGV-0190633_49	Structural annotation	PF00629, NF038128	NA	NA
UHGV-0190633_50	KOfam	K06904	NA	NA
UHGV-0190633_50	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0190633_50	UniRef90	UniRef90_R7F9U5	HK97 family phage prohead protease	NA
UHGV-0190633_50	eggNOG-mapper	927704.SELR_18200	Caudovirus prohead serine protease	NA
UHGV-0190633_50	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0190633_50	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0190633_50	COG	COG3740	Phage head maturation protease	NA
UHGV-0190633_50	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0190633_51	PHROG	phrog_10	major head protein	head and packaging
UHGV-0190633_51	UniRef90	UniRef90_R7FC89	Phage major capsid protein HK97 family	NA
UHGV-0190633_51	eggNOG-mapper	1536774.H70357_10630	Phage capsid family	NA
UHGV-0190633_51	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0190633_51	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0190633_51	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0190633_51	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0190633_52	UniRef90	UniRef90_UPI001D07D95D	phage head-tail connector protein	NA
UHGV-0190633_52	eggNOG-mapper	768704.Desmer_4461	NA	NA
UHGV-0190633_52	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0190633_52	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0190633_53	PHROG	phrog_25	head closure Hc1	connector
UHGV-0190633_53	UniRef90	UniRef90_R7FBN9	Putative phage head-tail adaptor	NA
UHGV-0190633_53	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0190633_53	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0190633_53	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0190633_54	Structural annotation	TIGR01725	NA	NA
UHGV-0190633_55	Structural annotation	PF05657	NA	NA
UHGV-0190633_56	PHROG	phrog_88	major tail protein	tail
UHGV-0190633_56	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-0190633_56	eggNOG-mapper	1408303.JNJJ01000024_gene3001	phage major tail protein, phi13 family	NA
UHGV-0190633_56	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0190633_56	COG	COG5492	NA	NA
UHGV-0190633_56	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0190633_59	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0190633_59	PHROG	phrog_23464	NA	unknown function
UHGV-0190633_59	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0190633_59	COG	COG5283	Phage-related tail protein	NA
UHGV-0190633_59	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0190633_60	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0190633_60	UniRef90	UniRef90_A0A843FD70	Phage tail family protein	NA
UHGV-0190633_60	eggNOG-mapper	411460.RUMTOR_01334	COG NOG18823 non supervised orthologous group	NA
UHGV-0190633_60	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0190633_60	COG	COG4722	Phage-related protein YomH	NA
UHGV-0190633_60	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0190633_61	PHROG	phrog_538	minor tail protein	tail
UHGV-0190633_61	UniRef90	UniRef90_A0A1I7FBJ0	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-0190633_61	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0190633_61	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0190633_61	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0190633_62	PHROG	phrog_1220	head protein	head and packaging
UHGV-0190633_62	eggNOG-mapper	1033738.CAEP01000018_gene3685	NA	NA
UHGV-0190633_62	Structural annotation	PF20747	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0190633	Yes	39,034 bps	42.91%	100.00%	0.9741
UHGV-1470532	No	39,995 bps	42.81%	99.90%	0.9745
UHGV-1380083	No	39,403 bps	42.96%	99.90%	0.9744
UHGV-0075831	No	32,722 bps	43.37%	83.68%	0.9768
UHGV-1394181	No	32,722 bps	43.37%	83.68%	0.9768
UHGV-0151710	No	32,690 bps	43.08%	83.65%	0.9672
UHGV-1393882	No	32,690 bps	43.08%	83.65%	0.9672
UHGV-1400700	No	32,669 bps	43.30%	83.54%	0.9759
UHGV-1463861	No	21,259 bps	42.61%	53.04%	0.9791
UHGV-1789188	No	19,766 bps	42.53%	49.17%	0.9804
UHGV-0179461	No	19,040 bps	42.61%	47.38%	0.9788
UHGV-2092212	No	15,036 bps	42.29%	37.44%	0.9698
UHGV-2158292	No	12,995 bps	43.07%	32.58%	0.9761
UHGV-1578488	No	11,748 bps	43.06%	29.43%	0.9734