vOTU-047205

Overview

vOTU representative UHGV-0192366

No. of genomes 5

Genome length 35,794 bps

Completeness 100.00% (complete)

Host Ruminococcus B gnavus

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-047205
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 › vSUBFAM-00099 › vGENUS-16085 › vSUBGEN-28613 › vOTU-047205
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Lachnospirales › Lachnospiraceae › Ruminococcus B › Ruminococcus B gnavus
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0192366
BioSample	SAMN05826625
Genome length	35,794 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	58
CDS density	90.15%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0192366_2	UniRef90	UniRef90_A0A3E4LWT8	HTH psq-type domain-containing protein	NA
UHGV-0192366_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0192366_2	Structural annotation	PF21291, NF041951, COG1513	NA	NA
UHGV-0192366_4	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0192366_4	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0192366_4	UniRef90	UniRef90_UPI0015706F54	phage regulatory protein/antirepressor Ant	NA
UHGV-0192366_4	eggNOG-mapper	262071.A3QSE0_9CAUD	DNA binding	NA
UHGV-0192366_4	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0192366_4	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0192366_4	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0192366_4	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3646	NA	NA
UHGV-0192366_8	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0192366_8	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0192366_8	UniRef90	UniRef90_A0A8B3BUM8	XRE family transcriptional regulator	NA
UHGV-0192366_8	eggNOG-mapper	411470.RUMGNA_02181	DNA-binding helix-turn-helix protein	NA
UHGV-0192366_8	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0192366_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0192366_8	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0192366_9	PHROG	phrog_806	NA	unknown function
UHGV-0192366_9	UniRef90	UniRef90_S2YED8	NA	NA
UHGV-0192366_9	eggNOG-mapper	411468.CLOSCI_01239	NA	NA
UHGV-0192366_9	Pfam	PF16729	NA	DUF5067
UHGV-0192366_9	Structural annotation	PF16729, MF_00791, NF003967, COG2967	NA	NA
UHGV-0192366_10	KOfam	K14059	int; integrase	NA
UHGV-0192366_10	PHROG	phrog_1	integrase	integration and excision
UHGV-0192366_10	UniRef90	UniRef90_A0A3E4LWT3	Site-specific integrase	NA
UHGV-0192366_10	eggNOG-mapper	610130.Closa_1360	Belongs to the 'phage' integrase family	NA
UHGV-0192366_10	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0192366_10	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0192366_10	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0192366_10	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0192366_12	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0192366_12	PHROG	phrog_435	endolysin	lysis
UHGV-0192366_12	UniRef90	UniRef90_A0A415SBY0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0192366_12	eggNOG-mapper	411470.RUMGNA_02814	Ami_3	NA
UHGV-0192366_12	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0192366_12	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0192366_12	Structural annotation	PF01520, MF_00417, TIGR02883, COG0860	NA	NA
UHGV-0192366_14	PHROG	phrog_10091	holin	lysis
UHGV-0192366_14	UniRef90	UniRef90_A0A2N5P008	Phage holin	NA
UHGV-0192366_14	eggNOG-mapper	428127.EUBDOL_01206	COG5546 Small integral membrane protein	NA
UHGV-0192366_14	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0192366_14	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0192366_14	COG	COG5546	NA	NA
UHGV-0192366_14	Structural annotation	COG5546	NA	NA
UHGV-0192366_15	eggNOG-mapper	608534.GCWU000341_02271	NA	NA
UHGV-0192366_16	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0192366_16	UniRef90	UniRef90_A7B3U9	Phage minor structural protein, N-terminal domain protein	NA
UHGV-0192366_16	eggNOG-mapper	411470.RUMGNA_02230	NA	NA
UHGV-0192366_16	Structural annotation	PF14594, PF08931, PF20942, TIGR01665, COG4926	NA	NA
UHGV-0192366_17	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0192366_17	UniRef90	UniRef90_UPI0015703812	phage tail family protein	NA
UHGV-0192366_17	eggNOG-mapper	411470.RUMGNA_02229	NA	NA
UHGV-0192366_17	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0192366_17	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0192366_17	COG	COG4722	Phage-related protein YomH	NA
UHGV-0192366_17	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0192366_18	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0192366_18	UniRef90	UniRef90_UPI001C8EB1BF	tape measure protein	NA
UHGV-0192366_18	eggNOG-mapper	742765.HMPREF9457_02136	nuclear chromosome segregation	NA
UHGV-0192366_18	COG	COG1511	NA	NA
UHGV-0192366_18	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0192366_19	PHROG	phrog_706	NA	unknown function
UHGV-0192366_19	UniRef90	UniRef90_UPI00129D4CEC	Gp15 family bacteriophage protein	NA
UHGV-0192366_19	eggNOG-mapper	411470.RUMGNA_02226	COG NOG24969 non supervised orthologous group	NA
UHGV-0192366_19	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0192366_19	Structural annotation	PF06854	NA	NA
UHGV-0192366_20	PHROG	phrog_4450	NA	unknown function
UHGV-0192366_20	UniRef90	UniRef90_UPI001C0AC01D	AP endonuclease	NA
UHGV-0192366_20	eggNOG-mapper	1235792.C808_05374	NA	NA
UHGV-0192366_20	Pfam	PF20378	NA	DUF6673
UHGV-0192366_20	Structural annotation	PF20378	NA	NA
UHGV-0192366_21	PHROG	phrog_3099	NA	unknown function
UHGV-0192366_21	eggNOG-mapper	411470.RUMGNA_02224	NA	NA
UHGV-0192366_21	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0192366_22	PHROG	phrog_3266	tail completion	connector
UHGV-0192366_22	eggNOG-mapper	411470.RUMGNA_02223	NA	NA
UHGV-0192366_22	Structural annotation	PF12691	NA	NA
UHGV-0192366_23	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0192366_23	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-0192366_23	eggNOG-mapper	411470.RUMGNA_02222	NA	NA
UHGV-0192366_23	Structural annotation	PF11114	NA	NA
UHGV-0192366_24	PHROG	phrog_3366	NA	unknown function
UHGV-0192366_24	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-0192366_24	Pfam	PF20536	NA	DUF6751
UHGV-0192366_24	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0192366_25	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0192366_25	eggNOG-mapper	658655.HMPREF0988_02559	NA	NA
UHGV-0192366_26	PHROG	phrog_422	major head protein	head and packaging
UHGV-0192366_26	eggNOG-mapper	411470.RUMGNA_02219	NA	NA
UHGV-0192366_26	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0192366_27	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0192366_27	UniRef90	UniRef90_A5KPA4	Phage minor structural protein GP20	NA
UHGV-0192366_27	eggNOG-mapper	411470.RUMGNA_02218	COG NOG36366 non supervised orthologous group	NA
UHGV-0192366_27	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0192366_27	Structural annotation	PF06810	NA	NA
UHGV-0192366_28	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0192366_28	Structural annotation	NF040910	NA	NA
UHGV-0192366_30	eggNOG-mapper	411470.RUMGNA_02215	NA	NA
UHGV-0192366_31	eggNOG-mapper	411470.RUMGNA_02214	NA	NA
UHGV-0192366_31	Structural annotation	PF08948, MF_01537, NF007541, COG3123	NA	NA
UHGV-0192366_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0192366_32	UniRef90	UniRef90_UPI001EE14397	phage minor capsid protein	NA
UHGV-0192366_32	eggNOG-mapper	411470.RUMGNA_02213	Phage minor capsid protein 2	NA
UHGV-0192366_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0192366_32	COG	COG2369	NA	NA
UHGV-0192366_32	Structural annotation	PF06152	NA	NA
UHGV-0192366_33	PHROG	phrog_533	portal protein	head and packaging
UHGV-0192366_33	UniRef90	UniRef90_A7B3T1	Putative phage minor capsid protein	NA
UHGV-0192366_33	eggNOG-mapper	411470.RUMGNA_02212	NA	NA
UHGV-0192366_33	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0192366_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0192366_34	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0192366_34	UniRef90	UniRef90_A7B3T0	Phage terminase, large subunit, PBSX family	NA
UHGV-0192366_34	eggNOG-mapper	411470.RUMGNA_02211	NA	NA
UHGV-0192366_34	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0192366_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-0192366_34	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0192366_35	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0192366_35	UniRef90	UniRef90_A0A2N5PKF8	Transposase	NA
UHGV-0192366_35	eggNOG-mapper	411470.RUMGNA_02210	transposase activity	NA
UHGV-0192366_35	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0192366_35	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0192366_35	Structural annotation	PF07141	NA	NA
UHGV-0192366_36	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0192366_36	UniRef90	UniRef90_A0A3E2UDC8	RNA polymerase subunit sigma-70	NA
UHGV-0192366_36	eggNOG-mapper	742740.HMPREF9474_03497	NA	NA
UHGV-0192366_36	Structural annotation	PF02996	NA	NA
UHGV-0192366_38	eggNOG-mapper	411470.RUMGNA_02203	NA	NA
UHGV-0192366_40	Structural annotation	PF02895	NA	NA
UHGV-0192366_41	PHROG	phrog_8684	NA	unknown function
UHGV-0192366_41	UniRef90	UniRef90_S2Z040	YopX domain-containing protein	NA
UHGV-0192366_41	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0192366_41	Pfam	PF09643	YopX protein	YopX
UHGV-0192366_41	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0192366_41	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0192366_43	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0192366_43	UniRef90	UniRef90_UPI001EDF81E9	Lar family restriction alleviation protein	NA
UHGV-0192366_43	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0192366_43	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0192366_43	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0192366_43	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0192366_44	PHROG	phrog_10714	NA	unknown function
UHGV-0192366_44	UniRef90	UniRef90_R6PMU2	DNA polymerase II large subunit	NA
UHGV-0192366_44	eggNOG-mapper	97139.C824_00134	NA	NA
UHGV-0192366_46	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0192366_46	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0192366_46	UniRef90	UniRef90_A0A8B3BSU1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0192366_46	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-0192366_46	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0192366_46	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0192366_46	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0192366_46	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0192366_49	PHROG	phrog_25488	NA	unknown function
UHGV-0192366_49	Structural annotation	PF12844, PF01316, MF_00535, TIGR00270, COG1476	NA	NA
UHGV-0192366_50	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0192366_50	UniRef90	UniRef90_A0A2N5NVH3	Phage_rep_org_N domain-containing protein	NA
UHGV-0192366_50	eggNOG-mapper	411470.RUMGNA_02197	phage replisome	NA
UHGV-0192366_50	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0192366_50	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0192366_50	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0192366_51	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0192366_51	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0192366_51	UniRef90	UniRef90_A7B3R6	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0192366_51	eggNOG-mapper	411470.RUMGNA_02196	COG COG4570 Holliday junction resolvase	NA
UHGV-0192366_51	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0192366_51	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0192366_51	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0192366_52	PHROG	phrog_7566	NA	unknown function
UHGV-0192366_52	UniRef90	UniRef90_A0A2N5NVH0	Phosphoenolpyruvate carboxykinase	NA
UHGV-0192366_53	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0192366_53	eggNOG-mapper	411470.RUMGNA_02194	NA	NA
UHGV-0192366_53	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0192366_54	PHROG	phrog_14970	NA	unknown function
UHGV-0192366_54	eggNOG-mapper	411470.RUMGNA_02193	double-strand break repair protein	NA
UHGV-0192366_54	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0192366_54	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0192366_55	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0192366_55	UniRef90	UniRef90_A7B3R2	Siphovirus Gp157	NA
UHGV-0192366_55	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0192366_55	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0192366_55	Structural annotation	PF05565	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0192366	Yes	35,794 bps	42.38%	100.00%	0.9825
UHGV-0272676	No	35,810 bps	42.39%	96.18%	0.9822
UHGV-0150183	No	16,327 bps	42.21%	44.06%	0.9823
UHGV-1577614	No	16,327 bps	42.21%	44.06%	0.9823
UHGV-1764813	No	15,346 bps	40.57%	40.36%	0.9770