vOTU-047213

Overview

vOTU representative UHGV-0192613

No. of genomes 11

Genome length 33,555 bps

Completeness 100.00% (complete)

Host Ruminiclostridium E siraeum

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-047213
Number of genomes	11
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00026 › vSUBFAM-00746 › vGENUS-20934 › vSUBGEN-41523 › vOTU-047213
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Ruminiclostridium E › Ruminiclostridium E siraeum
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0192613
BioSample	SAMN05827109
Genome length	33,555 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	49
CDS density	95.56%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0192613_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0192613_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0192613_1	UniRef90	UniRef90_T0UAQ4	Repressor	NA
UHGV-0192613_1	eggNOG-mapper	1121335.Clst_0369	helix-turn-helix	NA
UHGV-0192613_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0192613_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0192613_2	UniRef90	UniRef90_A0A2N6UIC0	NA	NA
UHGV-0192613_2	eggNOG-mapper	445974.CLORAM_02965	NA	NA
UHGV-0192613_2	Pfam	PF20432	Antitoxin Xre-like helix-turn-helix domain	Xre-like-HTH
UHGV-0192613_2	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0192613_4	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0192613_4	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-0192613_4	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0192613_6	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0192613_7	KOfam	K07317	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0192613_7	PHROG	phrog_11371	NA	unknown function
UHGV-0192613_7	UniRef90	UniRef90_A0A1C6BWK1	Modification methylase VspI	NA
UHGV-0192613_7	eggNOG-mapper	383372.Rcas_2229	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0192613_7	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0192613_7	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0192613_7	Structural annotation	PF20473, NF000058, COG0742	NA	NA
UHGV-0192613_10	Structural annotation	MF_01549, TIGR02228	NA	NA
UHGV-0192613_12	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0192613_12	PHROG	phrog_29443	NA	unknown function
UHGV-0192613_12	UniRef90	UniRef90_UPI00044D3944	DNA cytosine methyltransferase	NA
UHGV-0192613_12	eggNOG-mapper	908340.HMPREF9406_1089	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0192613_12	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0192613_13	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0192613_13	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0192613_13	UniRef90	UniRef90_UPI000F535B89	DNA cytosine methyltransferase	NA
UHGV-0192613_13	eggNOG-mapper	913865.DOT_5655	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0192613_13	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0192613_13	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0192613_13	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0192613_13	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0192613_15	PHROG	phrog_21613	NA	unknown function
UHGV-0192613_15	eggNOG-mapper	1120998.AUFC01000030_gene2214	NA	NA
UHGV-0192613_16	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0192613_16	PHROG	phrog_1499	NA	unknown function
UHGV-0192613_16	UniRef90	UniRef90_A0A1C6FNE5	Chromosome segregation protein	NA
UHGV-0192613_16	eggNOG-mapper	1120998.AUFC01000030_gene2215	DNA recombination	NA
UHGV-0192613_16	Pfam	PF13476	AAA domain	AAA_23
UHGV-0192613_16	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0192613_16	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0192613_17	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0192613_17	UniRef90	UniRef90_A0A352DNR3	NA	NA
UHGV-0192613_17	eggNOG-mapper	1120998.AUFC01000030_gene2216	NA	NA
UHGV-0192613_17	Pfam	PF12684	NA	DUF3799
UHGV-0192613_17	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0192613_17	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0192613_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0192613_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0192613_18	UniRef90	UniRef90_A0A174Z7R4	Single-stranded DNA-binding protein	NA
UHGV-0192613_18	eggNOG-mapper	445972.ANACOL_04434	Single-stranded DNA-binding protein	NA
UHGV-0192613_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0192613_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0192613_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0192613_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0192613_18	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0192613_19	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0192613_19	UniRef90	UniRef90_A0A3D4KYS5	ERCC4 domain-containing protein	NA
UHGV-0192613_19	eggNOG-mapper	1227360.C176_12553	ERCC4 domain	NA
UHGV-0192613_19	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0192613_19	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0192613_20	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0192613_20	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0192613_20	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0192613_20	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0192613_21	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0192613_21	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0192613_21	UniRef90	UniRef90_A0A6P1YAH9	ATP-binding protein	NA
UHGV-0192613_21	eggNOG-mapper	293826.Amet_2601	DNA replication protein	NA
UHGV-0192613_21	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0192613_21	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0192613_21	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0192613_22	PHROG	phrog_5051	NA	unknown function
UHGV-0192613_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0192613_24	UniRef90	UniRef90_A0A7I8D1K2	Sigma70_r4 domain-containing protein	NA
UHGV-0192613_24	eggNOG-mapper	1392487.JIAD01000001_gene536	sigma factor activity	NA
UHGV-0192613_24	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0192613_24	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0192613_25	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0192613_25	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0192613_25	UniRef90	UniRef90_B0MKX5	HNHc domain-containing protein	NA
UHGV-0192613_25	eggNOG-mapper	1414720.CBYM010000002_gene577	HNH nucleases	NA
UHGV-0192613_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0192613_26	UniRef90	UniRef90_A0A1C6JNN5	Phage terminase, small subunit	NA
UHGV-0192613_26	eggNOG-mapper	1414720.CBYM010000002_gene576	NA	NA
UHGV-0192613_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0192613_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0192613_27	UniRef90	UniRef90_D4JVJ5	Phage portal protein, HK97 family	NA
UHGV-0192613_27	eggNOG-mapper	397288.C806_00075	Portal protein	NA
UHGV-0192613_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0192613_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0192613_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0192613_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0192613_29	KOfam	K06904	NA	NA
UHGV-0192613_29	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0192613_29	UniRef90	UniRef90_D4JVJ3	Phage head maturation protease	NA
UHGV-0192613_29	eggNOG-mapper	1196031.ALEG01000039_gene1815	Phage prohead protease, HK97 family	NA
UHGV-0192613_29	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0192613_29	COG	COG3740	Phage head maturation protease	NA
UHGV-0192613_29	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0192613_30	PHROG	phrog_10	major head protein	head and packaging
UHGV-0192613_30	UniRef90	UniRef90_D4JVJ2	Phage major capsid protein, HK97 family	NA
UHGV-0192613_30	eggNOG-mapper	1304866.K413DRAFT_1225	phage major capsid protein, HK97 family	NA
UHGV-0192613_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0192613_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0192613_30	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0192613_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0192613_31	PHROG	phrog_6865	NA	unknown function
UHGV-0192613_31	Structural annotation	PF01281	NA	NA
UHGV-0192613_32	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0192613_32	UniRef90	UniRef90_A0A352DNU5	Phage gp6-like head-tail connector protein	NA
UHGV-0192613_32	eggNOG-mapper	632245.CLP_2693	Phage gp6-like head-tail connector protein	NA
UHGV-0192613_32	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0192613_32	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0192613_32	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0192613_33	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0192613_33	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0192613_34	Structural annotation	PF05657	NA	NA
UHGV-0192613_35	PHROG	phrog_88	major tail protein	tail
UHGV-0192613_35	UniRef90	UniRef90_D4JVI8	Phage major tail protein, phi13 family	NA
UHGV-0192613_35	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0192613_35	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0192613_36	Structural annotation	PF11836	NA	NA
UHGV-0192613_37	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0192613_37	UniRef90	UniRef90_D4JVI5	Phage terminase-like protein, large subunit	NA
UHGV-0192613_37	eggNOG-mapper	903814.ELI_1296	Phage Terminase	NA
UHGV-0192613_37	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0192613_37	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0192613_37	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0192613_37	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0192613_38	PHROG	phrog_888	NA	unknown function
UHGV-0192613_38	UniRef90	UniRef90_B0MKT9	SHOCT domain-containing protein	NA
UHGV-0192613_38	eggNOG-mapper	1151292.QEW_1347	Short C-terminal domain	NA
UHGV-0192613_38	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0192613_39	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0192613_40	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0192613_40	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0192613_40	UniRef90	UniRef90_D4JVI1	Tape measure domain	NA
UHGV-0192613_40	eggNOG-mapper	755731.Clo1100_1173	tape measure	NA
UHGV-0192613_40	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0192613_40	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0192613_40	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0192613_40	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0192613_41	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0192613_42	PHROG	phrog_25468	NA	unknown function
UHGV-0192613_42	UniRef90	UniRef90_B0MKT5	Hep/Hag repeat protein	NA
UHGV-0192613_42	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0192613_42	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0192613_42	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0192613_44	PHROG	phrog_199	holin	lysis
UHGV-0192613_44	UniRef90	UniRef90_R6RVE6	Toxin secretion/phage lysis holin	NA
UHGV-0192613_44	eggNOG-mapper	1211817.CCAT010000008_gene975	toxin secretion phage lysis holin	NA
UHGV-0192613_44	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0192613_44	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0192613_44	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0192613_44	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0192613_45	KOfam	K07273	acm; lysozyme	NA
UHGV-0192613_45	PHROG	phrog_291	endolysin	lysis
UHGV-0192613_45	UniRef90	UniRef90_K1RE35	Hydrolase family 25 (Fragment)	NA
UHGV-0192613_45	eggNOG-mapper	1341157.RF007C_06880	Glycosyl hydrolases family 25	NA
UHGV-0192613_45	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0192613_45	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0192613_45	Structural annotation	PF01183, PF11623, COG3757, COG2139	NA	NA
UHGV-0192613_46	KOfam	K14059	int; integrase	NA
UHGV-0192613_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0192613_46	UniRef90	UniRef90_B0ML01	Site-specific recombinase, phage integrase family	NA
UHGV-0192613_46	eggNOG-mapper	641112.ACOK01000073_gene2860	Phage integrase family	NA
UHGV-0192613_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0192613_46	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0192613_46	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0192613_47	eggNOG-mapper	755731.Clo1100_1139	NA	NA
UHGV-0192613_48	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0192613_48	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0192613_48	UniRef90	UniRef90_D4JVL7	Exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0192613_48	eggNOG-mapper	877424.ATWC01000001_gene2107	EXOIII	NA
UHGV-0192613_48	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0192613_48	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0192613_48	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0192613_48	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0192613_48	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0192613_48	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847, COG5275	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0192613	Yes	33,555 bps	45.40%	100.00%	0.9760
UHGV-0147805	No	33,578 bps	45.39%	89.85%	0.9751
UHGV-1466610	No	33,578 bps	45.39%	89.85%	0.9751
UHGV-0377934	No	33,490 bps	45.37%	89.61%	0.9748
UHGV-0078629	No	31,934 bps	45.29%	85.45%	0.9706
UHGV-1425773	No	21,927 bps	44.75%	57.49%	0.9767
UHGV-1670541	No	18,361 bps	46.75%	49.13%	0.9785
UHGV-1781463	No	16,590 bps	44.03%	42.98%	0.9706
UHGV-1730840	No	15,275 bps	43.79%	39.62%	0.9739
UHGV-1567429	No	11,989 bps	46.51%	32.08%	0.9808
UHGV-1787091	No	10,936 bps	46.43%	29.26%	0.9707