vOTU-047228

Overview

vOTU representative UHGV-0192883

No. of genomes 4

Genome length 34,563 bps

Completeness 100.00% (complete)

Host Unclassified

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-047228
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00074 › vSUBFAM-01638 › vGENUS-15184 › vSUBGEN-26239 › vOTU-047228
Host taxonomy
Host range breadth
Host prediction method
Lifestyle	Temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0192883
BioSample	NA
Genome length	34,563 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	55
CDS density	93.04%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0192883_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0192883_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0192883_1	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0192883_2	PHROG	phrog_87	metallo-protease	other
UHGV-0192883_2	UniRef90	UniRef90_A0A1Y4S739	Peptidase_M78 domain-containing protein	NA
UHGV-0192883_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0192883_3	PHROG	phrog_5783	NA	unknown function
UHGV-0192883_3	UniRef90	UniRef90_R6QMT3	NYN domain-containing protein	NA
UHGV-0192883_3	eggNOG-mapper	742742.HMPREF9452_01315	NYN domain	NA
UHGV-0192883_3	Pfam	PF01936	NYN domain	NYN
UHGV-0192883_3	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0192883_3	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-0192883_4	KOfam	K14059	int; integrase	NA
UHGV-0192883_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0192883_4	UniRef90	UniRef90_A0A353EXX9	Tyr recombinase domain-containing protein	NA
UHGV-0192883_4	eggNOG-mapper	1123313.ATUT01000003_gene814	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0192883_4	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0192883_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0192883_4	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0192883_4	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0192883_9	UniRef90	UniRef90_A0A3E2B3T2	NA	NA
UHGV-0192883_10	PHROG	phrog_4242	tail fiber protein	tail
UHGV-0192883_10	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0192883_10	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0192883_11	PHROG	phrog_1281	NA	unknown function
UHGV-0192883_11	UniRef90	UniRef90_A0A2T3G2D7	NA	NA
UHGV-0192883_11	eggNOG-mapper	679192.HMPREF9013_1310	NA	NA
UHGV-0192883_11	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0192883_11	COG	COG3600	NA	NA
UHGV-0192883_11	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0192883_12	eggNOG-mapper	1227268.HMPREF1552_00029	NA	NA
UHGV-0192883_14	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0192883_20	PHROG	phrog_477	head-tail adaptor Ad1	connector
UHGV-0192883_20	Pfam	PF20557	Putative DnaT-like ssDNA binding protein	DnaT_2
UHGV-0192883_20	Structural annotation	PF20557	NA	NA
UHGV-0192883_21	PHROG	phrog_1378	NA	unknown function
UHGV-0192883_21	eggNOG-mapper	1304866.K413DRAFT_0784	NA	NA
UHGV-0192883_22	PHROG	phrog_422	major head protein	head and packaging
UHGV-0192883_22	UniRef90	UniRef90_A0A3C2DU69	Capsid protein	NA
UHGV-0192883_22	eggNOG-mapper	545697.HMPREF0216_02849	NA	NA
UHGV-0192883_22	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0192883_23	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0192883_25	PHROG	phrog_4611	minor head protein	head and packaging
UHGV-0192883_25	UniRef90	UniRef90_W0U9J3	Phage minor capsid protein (Glycoside Hydrolase Family 25 protein )	NA
UHGV-0192883_25	eggNOG-mapper	1160721.RBI_II00541	NA	NA
UHGV-0192883_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0192883_25	COG	COG2369	NA	NA
UHGV-0192883_25	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0192883_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-0192883_26	UniRef90	UniRef90_R4K4T6	Phage portal protein, SPP1 Gp6	NA
UHGV-0192883_26	eggNOG-mapper	86416.Clopa_3381	PFAM Phage portal protein, SPP1 Gp6-like	NA
UHGV-0192883_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0192883_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0192883_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0192883_27	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0192883_27	UniRef90	UniRef90_A0A8H0Z260	PBSX family phage terminase large subunit	NA
UHGV-0192883_27	eggNOG-mapper	1395513.P343_07995	Phage terminase large subunit	NA
UHGV-0192883_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0192883_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0192883_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0192883_27	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0192883_28	PHROG	phrog_2412	NA	unknown function
UHGV-0192883_28	UniRef90	UniRef90_A0A4V1EFZ3	NA	NA
UHGV-0192883_28	eggNOG-mapper	173707.Q938L4_9CAUD	NA	NA
UHGV-0192883_29	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0192883_29	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0192883_29	UniRef90	UniRef90_A0A6J7X0G3	Putative methylase	NA
UHGV-0192883_29	eggNOG-mapper	226185.EF_2114	DNA methylase	NA
UHGV-0192883_29	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0192883_29	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0192883_29	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0192883_29	COG	COG0863	DNA modification methylase	NA
UHGV-0192883_29	Structural annotation	PF01555, PF02195, NF010253, TIGR00180, COG0863, COG5119	NA	NA
UHGV-0192883_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0192883_30	Structural annotation	PF07374, MF_00674, TIGR01636	NA	NA
UHGV-0192883_33	PHROG	phrog_13999	NA	unknown function
UHGV-0192883_35	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0192883_35	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0192883_35	UniRef90	UniRef90_A0A265Q2J6	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0192883_35	eggNOG-mapper	431943.CKL_3292	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0192883_35	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0192883_35	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0192883_35	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0192883_35	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0192883_35	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0192883_36	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0192883_36	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0192883_36	UniRef90	UniRef90_A0A2V2ET76	Single-stranded DNA-binding protein	NA
UHGV-0192883_36	eggNOG-mapper	1042163.BRLA_c031440	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0192883_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0192883_36	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0192883_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0192883_36	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0192883_36	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0192883_37	PHROG	phrog_236	nucleotide kinase	other
UHGV-0192883_37	UniRef90	UniRef90_A0A6C0G219	NA	NA
UHGV-0192883_37	eggNOG-mapper	1268072.PSAB_05960	NA	NA
UHGV-0192883_37	Pfam	PF11753	NA	DUF3310
UHGV-0192883_37	Structural annotation	PF11753	NA	NA
UHGV-0192883_40	PHROG	phrog_824	NA	unknown function
UHGV-0192883_40	UniRef90	UniRef90_A0A2Z4GUA1	VRR-NUC domain-containing protein	NA
UHGV-0192883_40	eggNOG-mapper	97139.C824_00735	VRR-NUC domain	NA
UHGV-0192883_40	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0192883_40	Structural annotation	PF08774	NA	NA
UHGV-0192883_43	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0192883_43	UniRef90	UniRef90_B0MWU9	NA	NA
UHGV-0192883_43	eggNOG-mapper	1196322.A370_04251	NA	NA
UHGV-0192883_43	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0192883_43	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0192883_44	PHROG	phrog_398	NA	unknown function
UHGV-0192883_44	UniRef90	UniRef90_UPI00137B6F1E	putative HNHc nuclease	NA
UHGV-0192883_44	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-0192883_44	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0192883_44	Structural annotation	PF16784	NA	NA
UHGV-0192883_45	PHROG	phrog_14970	NA	unknown function
UHGV-0192883_45	UniRef90	UniRef90_A0A1C5NV07	DNA damage response protein A	NA
UHGV-0192883_45	eggNOG-mapper	1235799.C818_00195	double-strand break repair protein	NA
UHGV-0192883_45	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0192883_45	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0192883_47	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0192883_47	UniRef90	UniRef90_A0A285PT93	Siphovirus Gp157	NA
UHGV-0192883_47	eggNOG-mapper	43989.cce_4477	Siphovirus Gp157	NA
UHGV-0192883_47	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0192883_47	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0192883_49	PHROG	phrog_2113	NA	unknown function
UHGV-0192883_55	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0192883_55	UniRef90	UniRef90_R5BZX3	DNA-binding helix-turn-helix protein	NA
UHGV-0192883_55	eggNOG-mapper	1514668.JOOA01000001_gene726	Helix-turn-helix XRE-family like proteins	NA
UHGV-0192883_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0192883_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0192883_55	Structural annotation	PF01381, NF041951, COG1476	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0192883	Yes	34,563 bps	47.46%	100.00%	0.9676
UHGV-0167287	No	33,670 bps	47.33%	90.69%	0.9645
UHGV-1825124	No	12,201 bps	47.61%	20.72%	0.9789
UHGV-1705777	No	10,889 bps	47.12%	15.06%	0.8531