vOTU-047282

Overview

vOTU representative UHGV-0194646

No. of genomes 2

Genome length 44,267 bps

Completeness 100.00% (complete)

Host Limivicinus sp900547315

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-047282
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 › vSUBFAM-00556 › vGENUS-00560 › vSUBGEN-26663 › vOTU-047282
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Oscillospiraceae › Limivicinus › Limivicinus sp900547315
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0194646
BioSample	SAMN09781741
Genome length	44,267 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	53
CDS density	90.58%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0194646_2	PHROG	phrog_7566	NA	unknown function
UHGV-0194646_2	eggNOG-mapper	693746.OBV_25470	NA	NA
UHGV-0194646_3	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0194646_3	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-0194646_3	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0194646_3	Structural annotation	PF05772	NA	NA
UHGV-0194646_4	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0194646_4	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0194646_4	UniRef90	UniRef90_A0A3D0LZW1	Bac_DnaA domain-containing protein	NA
UHGV-0194646_4	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0194646_4	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0194646_4	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0194646_4	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA
UHGV-0194646_5	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0194646_5	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0194646_5	UniRef90	UniRef90_A0A316NQ75	Single-stranded DNA-binding protein	NA
UHGV-0194646_5	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0194646_5	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0194646_5	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0194646_5	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0194646_5	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0194646_5	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0194646_6	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0194646_6	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0194646_6	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0194646_6	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0194646_9	PHROG	phrog_2113	NA	unknown function
UHGV-0194646_9	UniRef90	UniRef90_A0A8D9UH91	HTH cro/C1-type domain-containing protein	NA
UHGV-0194646_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0194646_9	Structural annotation	PF01381, PF21715, NF041951, TIGR04176, COG1476, COG1654	NA	NA
UHGV-0194646_13	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-0194646_13	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0194646_15	Structural annotation	COG2005	NA	NA
UHGV-0194646_17	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0194646_17	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0194646_17	UniRef90	UniRef90_A0A844DFR0	Helix-turn-helix domain-containing protein	NA
UHGV-0194646_17	eggNOG-mapper	755731.Clo1100_1415	DNA-binding helix-turn-helix protein	NA
UHGV-0194646_17	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0194646_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0194646_17	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0194646_17	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0194646_20	NCBIFam	NF033223.2	YHYH domain-containing protein	NA
UHGV-0194646_20	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0194646_21	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0194646_22	KOfam	K14059	int; integrase	NA
UHGV-0194646_22	PHROG	phrog_1	integrase	integration and excision
UHGV-0194646_22	UniRef90	UniRef90_UPI00195CC1EE	tyrosine-type recombinase/integrase	NA
UHGV-0194646_22	eggNOG-mapper	411471.SUBVAR_05816	Belongs to the 'phage' integrase family	NA
UHGV-0194646_22	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0194646_22	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0194646_22	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0194646_23	UniRef90	UniRef90_A0A843GWV6	Rubrerythrin domain-containing protein	NA
UHGV-0194646_23	Pfam	PF02915	Rubrerythrin	Rubrerythrin
UHGV-0194646_23	Structural annotation	PF02255, NF007156, COG1447	NA	NA
UHGV-0194646_26	UniRef90	UniRef90_A0A8D9PDT6	Transcriptional regulatory protein	NA
UHGV-0194646_27	PHROG	phrog_1129	holin	lysis
UHGV-0194646_27	UniRef90	UniRef90_A0A2V2CUX8	Enolase	NA
UHGV-0194646_27	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0194646_27	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0194646_27	Structural annotation	PF06946	NA	NA
UHGV-0194646_28	PHROG	phrog_937	hemolysin	other
UHGV-0194646_28	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0194646_29	PHROG	phrog_1493	endolysin	lysis
UHGV-0194646_29	UniRef90	UniRef90_A0A1C6GMR6	NlpC/P60 family	NA
UHGV-0194646_29	eggNOG-mapper	871963.Desdi_1346	NLP P60 protein	NA
UHGV-0194646_29	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0194646_29	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0194646_29	Structural annotation	PF01471, PF00877, NF033742, NF038080, COG0791	NA	NA
UHGV-0194646_30	PHROG	phrog_5240	tail fiber protein	tail
UHGV-0194646_30	eggNOG-mapper	1410631.JHWZ01000005_gene204	GDSL-like Lipase/Acylhydrolase	NA
UHGV-0194646_30	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0194646_30	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0194646_32	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0194646_32	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0194646_32	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0194646_33	PHROG	phrog_12105	NA	unknown function
UHGV-0194646_33	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0194646_34	PHROG	phrog_15239	NA	unknown function
UHGV-0194646_35	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0194646_35	UniRef90	UniRef90_A0A3C0NPN1	N4-gp56 family major capsid protein	NA
UHGV-0194646_35	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0194646_35	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0194646_35	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0194646_36	PHROG	phrog_13908	NA	unknown function
UHGV-0194646_37	PHROG	phrog_22978	NA	unknown function
UHGV-0194646_37	UniRef90	UniRef90_R5G452	PBECR5 domain-containing protein	NA
UHGV-0194646_37	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0194646_37	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0194646_38	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0194646_39	KOfam	K13925	pfbA; plasmin and fibronectin-binding protein A	NA
UHGV-0194646_39	PHROG	phrog_372	tail protein	tail
UHGV-0194646_39	eggNOG-mapper	474922.ELA28925	Glucan 1,3-beta-glucosidase	NA
UHGV-0194646_39	Pfam	PF05895	NA	DUF859
UHGV-0194646_39	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-0194646_40	KOfam	K07584	NA	NA
UHGV-0194646_40	PHROG	phrog_4478	peptidase	other
UHGV-0194646_40	UniRef90	UniRef90_A0A7C6WRZ1	Ribosomal-processing cysteine protease Prp	NA
UHGV-0194646_40	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0194646_40	Structural annotation	PF04327, NF011132, COG2868	NA	NA
UHGV-0194646_41	PHROG	phrog_156	portal protein	head and packaging
UHGV-0194646_41	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0194646_41	Structural annotation	PF16510, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0194646_43	Structural annotation	PF05534, COG4877	NA	NA
UHGV-0194646_44	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0194646_44	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0194646_44	UniRef90	UniRef90_A0A2V2CDD6	Terminase-like family protein	NA
UHGV-0194646_44	eggNOG-mapper	411483.FAEPRAA2165_01044	Terminase-like family	NA
UHGV-0194646_44	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0194646_44	COG	COG1783	Phage terminase large subunit	NA
UHGV-0194646_44	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0194646_45	UniRef90	UniRef90_A0A3C0NNN3	HTH psq-type domain-containing protein	NA
UHGV-0194646_52	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0194646_52	UniRef90	UniRef90_A0A7J2R6L5	DNA cytosine methyltransferase (Fragment)	NA
UHGV-0194646_52	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0194646_52	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0194646_53	PHROG	phrog_15773	NA	unknown function
UHGV-0194646_53	dbAPIS	APIS008	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0194646	Yes	44,267 bps	57.20%	100.00%	0.9810
UHGV-0177889	No	44,282 bps	57.20%	99.90%	0.9810