vOTU-047285

Overview

vOTU representative UHGV-0194685

No. of genomes 3

Genome length 42,355 bps

Completeness 100.00% (complete)

Host Enterococcus A avium

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-047285
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00052 › vSUBFAM-02265 › vGENUS-16885 › vSUBGEN-30878 › vOTU-047285
Host taxonomy	Bacteria › Firmicutes › Bacilli › Lactobacillales › Enterococcaceae › Enterococcus A › Enterococcus A avium
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0194685
BioSample	NA
Genome length	42,355 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	59
CDS density	88.46%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0194685_1	PHROG	phrog_904	excisionase	integration and excision
UHGV-0194685_1	UniRef90	UniRef90_A0A376H781	Excisionase	NA
UHGV-0194685_1	eggNOG-mapper	226185.EF_0309	NA	NA
UHGV-0194685_4	UniRef90	UniRef90_A0A7X7YZ46	Zinc ribbon-containing protein	NA
UHGV-0194685_4	eggNOG-mapper	1123009.AUID01000044_gene2308	Zinc-ribbon containing domain	NA
UHGV-0194685_4	Pfam	PF07295	Zinc-ribbon containing domain	DUF1451
UHGV-0194685_4	Structural annotation	TIGR02605, COG1996	NA	NA
UHGV-0194685_5	UniRef90	UniRef90_UPI00093F45B3	Rnase Y domain-containing protein	NA
UHGV-0194685_5	eggNOG-mapper	1158601.I585_01189	NA	NA
UHGV-0194685_6	PHROG	phrog_9607	NA	unknown function
UHGV-0194685_6	eggNOG-mapper	1140002.I570_01467	NA	NA
UHGV-0194685_6	Structural annotation	PF05753, MF_00791, NF003967, COG3354	NA	NA
UHGV-0194685_7	PHROG	phrog_19596	NA	unknown function
UHGV-0194685_8	Pfam	PF09466	Hypothetical protein Yqai	Yqai
UHGV-0194685_9	eggNOG-mapper	1158614.I592_00589	NA	NA
UHGV-0194685_10	PHROG	phrog_5118	NA	unknown function
UHGV-0194685_10	UniRef90	UniRef90_UPI00162A4605	ribbon-helix-helix domain-containing protein	NA
UHGV-0194685_10	eggNOG-mapper	1314.HKU360_01256	NA	NA
UHGV-0194685_11	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0194685_11	UniRef90	UniRef90_A0A7U6L474	DNA-binding protein	NA
UHGV-0194685_11	eggNOG-mapper	1140001.I571_01132	AAA domain	NA
UHGV-0194685_11	Pfam	PF13479	AAA domain	AAA_24
UHGV-0194685_11	NCBIFam	TIGR01618.1	phage nucleotide-binding protein	NA
UHGV-0194685_11	Structural annotation	PF13479, MF_00350, TIGR01618, COG1066	NA	NA
UHGV-0194685_12	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0194685_12	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0194685_12	UniRef90	UniRef90_A0A7U6QW10	DEAD/DEAH box helicase	NA
UHGV-0194685_12	eggNOG-mapper	1140001.I571_01133	helicase superfamily c-terminal domain	NA
UHGV-0194685_12	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0194685_12	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0194685_12	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0194685_12	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0194685_13	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0194685_13	UniRef90	UniRef90_UPI00137507B0	NA	NA
UHGV-0194685_13	eggNOG-mapper	1140001.I571_01134	NA	NA
UHGV-0194685_13	Pfam	PF05037	NA	DUF669
UHGV-0194685_13	Structural annotation	PF05037, MF_00720, NF004948, COG2965	NA	NA
UHGV-0194685_14	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0194685_14	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0194685_14	UniRef90	UniRef90_A0A7U6L457	SF3 helicase domain-containing protein	NA
UHGV-0194685_14	eggNOG-mapper	1140001.I571_01135	Phage plasmid primase, P4	NA
UHGV-0194685_14	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0194685_14	Pfam	PF19263	NA	DUF5906
UHGV-0194685_14	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0194685_14	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0194685_14	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0194685_14	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-0194685_15	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0194685_15	UniRef90	UniRef90_A0A7U6L454	VRR-NUC domain-containing protein	NA
UHGV-0194685_15	eggNOG-mapper	1140001.I571_01136	VRR-NUC domain	NA
UHGV-0194685_15	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0194685_15	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-0194685_19	PHROG	phrog_9484	NA	unknown function
UHGV-0194685_19	UniRef90	UniRef90_A8ASN6	Gp47	NA
UHGV-0194685_20	PHROG	phrog_10419	NA	unknown function
UHGV-0194685_20	UniRef90	UniRef90_UPI00190EC09E	phosphocarrier protein HPr domain protein	NA
UHGV-0194685_20	eggNOG-mapper	1140002.I570_02901	NA	NA
UHGV-0194685_21	PHROG	phrog_98	NA	unknown function
UHGV-0194685_21	UniRef90	UniRef90_A0A7U6L5F2	YopX domain-containing protein	NA
UHGV-0194685_21	eggNOG-mapper	1140002.I570_04025	YopX protein	NA
UHGV-0194685_21	Pfam	PF09643	YopX protein	YopX
UHGV-0194685_21	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0194685_22	PHROG	phrog_11535	NA	unknown function
UHGV-0194685_26	PHROG	phrog_12394	NA	unknown function
UHGV-0194685_27	PHROG	phrog_98	NA	unknown function
UHGV-0194685_27	UniRef90	UniRef90_UPI000F8002D7	YopX family protein	NA
UHGV-0194685_27	eggNOG-mapper	673837.D2IZS1_9CAUD	YopX protein	NA
UHGV-0194685_27	Pfam	PF09643	YopX protein	YopX
UHGV-0194685_27	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0194685_27	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0194685_28	PHROG	phrog_11760	NA	unknown function
UHGV-0194685_28	UniRef90	UniRef90_A0A0E0UWB8	Phenylalanyl-tRNA synthetase, beta subunit	NA
UHGV-0194685_28	eggNOG-mapper	1140002.I570_04023	NA	NA
UHGV-0194685_29	PHROG	phrog_11679	NA	unknown function
UHGV-0194685_31	UniRef90	UniRef90_A0A437UJ52	Transcriptional regulator	NA
UHGV-0194685_31	eggNOG-mapper	1139219.I569_00226	NA	NA
UHGV-0194685_32	PHROG	phrog_23915	NA	unknown function
UHGV-0194685_32	eggNOG-mapper	1158614.I592_00615	NA	NA
UHGV-0194685_33	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0194685_33	PHROG	phrog_5956	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0194685_33	UniRef90	UniRef90_R2XEX5	HNHc domain-containing protein	NA
UHGV-0194685_33	eggNOG-mapper	1158614.I592_00616	HNH nucleases	NA
UHGV-0194685_33	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0194685_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0194685_33	Structural annotation	PF05766, NF008448	NA	NA
UHGV-0194685_34	PHROG	phrog_1066	NA	unknown function
UHGV-0194685_34	eggNOG-mapper	1140001.I571_01742	NA	NA
UHGV-0194685_35	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0194685_35	UniRef90	UniRef90_A0A5P3FX70	Terminase	NA
UHGV-0194685_35	eggNOG-mapper	1140001.I571_01743	Phage Terminase	NA
UHGV-0194685_35	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0194685_35	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0194685_35	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0194685_35	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0194685_36	PHROG	phrog_12	portal protein	head and packaging
UHGV-0194685_36	UniRef90	UniRef90_A0A377L6J0	Phage portal protein	NA
UHGV-0194685_36	eggNOG-mapper	1140001.I571_01744	Phage portal protein	NA
UHGV-0194685_36	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0194685_36	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0194685_36	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0194685_36	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0194685_37	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0194685_37	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0194685_37	UniRef90	UniRef90_A0A377KNA0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0194685_37	eggNOG-mapper	1140001.I571_01745	Clp protease	NA
UHGV-0194685_37	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0194685_37	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0194685_37	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0194685_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-0194685_38	UniRef90	UniRef90_UPI0004975DC5	phage major capsid protein	NA
UHGV-0194685_38	eggNOG-mapper	1140001.I571_01746	Phage capsid family	NA
UHGV-0194685_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0194685_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0194685_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0194685_38	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0194685_39	PHROG	phrog_749	NA	unknown function
UHGV-0194685_39	UniRef90	UniRef90_UPI000B852D33	phage gp6-like head-tail connector protein	NA
UHGV-0194685_39	eggNOG-mapper	1140001.I571_01747	NA	NA
UHGV-0194685_39	Structural annotation	TIGR01560	NA	NA
UHGV-0194685_40	PHROG	phrog_25	head closure Hc1	connector
UHGV-0194685_40	UniRef90	UniRef90_A0A430AK20	Phage head-tail adapter protein	NA
UHGV-0194685_40	eggNOG-mapper	1140001.I571_01748	NA	NA
UHGV-0194685_40	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0194685_41	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0194685_41	UniRef90	UniRef90_A0A0M2B3I2	Phage protein, HK97 gp10 family	NA
UHGV-0194685_41	eggNOG-mapper	1140001.I571_01749	NA	NA
UHGV-0194685_41	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0194685_42	PHROG	phrog_78	tail terminator	connector
UHGV-0194685_42	UniRef90	UniRef90_A0A377L6L1	Gp10 family protein	NA
UHGV-0194685_42	eggNOG-mapper	1158614.I592_00626	NA	NA
UHGV-0194685_42	Structural annotation	PF05657	NA	NA
UHGV-0194685_43	PHROG	phrog_88	major tail protein	tail
UHGV-0194685_43	UniRef90	UniRef90_R2XFL5	Phi13 family phage major tail protein	NA
UHGV-0194685_43	eggNOG-mapper	1158614.I592_00627	Phage tail tube protein	NA
UHGV-0194685_43	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0194685_43	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0194685_43	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0194685_44	PHROG	phrog_341	major tail protein	tail
UHGV-0194685_44	UniRef90	UniRef90_C9B4L7	Predicted protein	NA
UHGV-0194685_44	eggNOG-mapper	1140001.I571_01752	NA	NA
UHGV-0194685_45	PHROG	phrog_187	head-tail adaptor	connector
UHGV-0194685_45	UniRef90	UniRef90_C9APW1	Predicted protein	NA
UHGV-0194685_45	eggNOG-mapper	1140001.I571_01753	NA	NA
UHGV-0194685_45	Structural annotation	PF06894, TIGR01674	NA	NA
UHGV-0194685_46	PHROG	phrog_1293	tail length tape measure protein	tail
UHGV-0194685_46	UniRef90	UniRef90_A0A510C9C3	Phage tail tape measure protein	NA
UHGV-0194685_46	eggNOG-mapper	1158614.I592_00631	Phage-related minor tail protein	NA
UHGV-0194685_46	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0194685_46	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0194685_46	COG	COG3953	SLT domain protein	NA
UHGV-0194685_47	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0194685_47	UniRef90	UniRef90_UPI0008C21871	phage tail family protein	NA
UHGV-0194685_47	eggNOG-mapper	1158614.I592_00632	Phage tail protein	NA
UHGV-0194685_47	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0194685_47	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0194685_48	PHROG	phrog_326	tail protein with endopeptidase domain	other
UHGV-0194685_48	UniRef90	UniRef90_UPI001C0FC0B4	phage tail protein	NA
UHGV-0194685_48	eggNOG-mapper	1158614.I592_00633	Prophage endopeptidase tail	NA
UHGV-0194685_48	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0194685_48	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0194685_48	COG	COG4926	Phage-related protein	NA
UHGV-0194685_48	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0194685_49	PHROG	phrog_4577	tail protein	tail
UHGV-0194685_49	eggNOG-mapper	1158614.I592_00634	NA	NA
UHGV-0194685_49	Structural annotation	NF041901	NA	NA
UHGV-0194685_50	PHROG	phrog_10054	NA	unknown function
UHGV-0194685_50	UniRef90	UniRef90_A0A7U6L4B6	BppU_N domain-containing protein	NA
UHGV-0194685_50	eggNOG-mapper	1158614.I592_00635	NA	NA
UHGV-0194685_50	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0194685_50	COG	COG0584	Glycerophosphoryl diester phosphodiesterase	NA
UHGV-0194685_50	Structural annotation	PF10651, PF14741	NA	NA
UHGV-0194685_51	PHROG	phrog_1536	NA	unknown function
UHGV-0194685_51	eggNOG-mapper	1158614.I592_01135	NA	NA
UHGV-0194685_52	PHROG	phrog_1382	NA	unknown function
UHGV-0194685_52	eggNOG-mapper	1140001.I571_01172	NA	NA
UHGV-0194685_52	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0194685_53	PHROG	phrog_689	holin	lysis
UHGV-0194685_53	UniRef90	UniRef90_S0KXG5	Phage holin	NA
UHGV-0194685_53	eggNOG-mapper	1140002.I570_03994	Haemolysin XhlA	NA
UHGV-0194685_53	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-0194685_54	PHROG	phrog_881	holin	lysis
UHGV-0194685_54	UniRef90	UniRef90_R2XRB1	Holin	NA
UHGV-0194685_54	eggNOG-mapper	1158614.I592_02317	Putative phage holin Dp-1	NA
UHGV-0194685_54	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0194685_54	Structural annotation	PF16938	NA	NA
UHGV-0194685_55	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0194685_55	PHROG	phrog_1110	endolysin	lysis
UHGV-0194685_55	UniRef90	UniRef90_A0A7U6L495	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0194685_55	eggNOG-mapper	1158614.I592_02410	Ami_2	NA
UHGV-0194685_55	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0194685_55	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0194685_55	Structural annotation	PF01835, COG5632	NA	NA
UHGV-0194685_56	KOfam	K14059	int; integrase	NA
UHGV-0194685_56	PHROG	phrog_1	integrase	integration and excision
UHGV-0194685_56	UniRef90	UniRef90_A0A7H4KVP6	Site-specific tyrosine recombinase XerC-family protein	NA
UHGV-0194685_56	eggNOG-mapper	1158614.I592_00576	Phage integrase family	NA
UHGV-0194685_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0194685_56	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0194685_56	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0194685_57	PHROG	phrog_3727	NA	unknown function
UHGV-0194685_57	UniRef90	UniRef90_R2XFS1	NA	NA
UHGV-0194685_57	Pfam	PF11611	NA	DUF4352
UHGV-0194685_58	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0194685_58	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0194685_58	UniRef90	UniRef90_R2XTX4	HTH cro/C1-type domain-containing protein	NA
UHGV-0194685_58	eggNOG-mapper	1158614.I592_00578	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0194685_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0194685_58	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0194685_58	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0194685_58	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0194685_59	Structural annotation	PF01381, NF041951, COG1476	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0194685	Yes	42,355 bps	38.20%	100.00%	0.9736
UHGV-1487723	No	26,397 bps	38.26%	63.43%	0.9692
UHGV-0145818	No	10,293 bps	37.37%	20.66%	0.9621