vOTU-047302

Overview

vOTU representative UHGV-0195269

No. of genomes 2

Genome length 41,756 bps

Completeness 100.00% (complete)

Host Gemmiger

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-047302
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 › vSUBFAM-00079 › vGENUS-00402 › vSUBGEN-26084 › vOTU-047302
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Gemmiger
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0195269
BioSample	SAMN09781711
Genome length	41,756 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	69
CDS density	89.01%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0195269_1	PHROG	phrog_16490	NA	unknown function
UHGV-0195269_1	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0195269_2	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0195269_2	eggNOG-mapper	86416.Clopa_4295	NA	NA
UHGV-0195269_2	Structural annotation	PF17375	NA	NA
UHGV-0195269_3	PHROG	phrog_20016	NA	unknown function
UHGV-0195269_3	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0195269_3	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0195269_3	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0195269_4	Structural annotation	PF12510	NA	NA
UHGV-0195269_5	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0195269_7	KOfam	K14059	int; integrase	NA
UHGV-0195269_7	PHROG	phrog_1	integrase	integration and excision
UHGV-0195269_7	UniRef90	UniRef90_UPI001F166C84	tyrosine-type recombinase/integrase	NA
UHGV-0195269_7	eggNOG-mapper	693746.OBV_25530	Phage integrase family	NA
UHGV-0195269_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0195269_7	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0195269_7	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0195269_8	PHROG	phrog_10934	NA	unknown function
UHGV-0195269_8	UniRef90	UniRef90_A0A242LDX9	TM2 domain-containing protein	NA
UHGV-0195269_8	eggNOG-mapper	883066.HMPREF9233_01038	NA	NA
UHGV-0195269_11	PHROG	phrog_585	NA	unknown function
UHGV-0195269_11	UniRef90	UniRef90_A0A2G0E8R9	NA	NA
UHGV-0195269_11	eggNOG-mapper	1158602.I590_03003	NA	NA
UHGV-0195269_11	Pfam	PF10711	NA	DUF2513
UHGV-0195269_11	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0195269_12	UniRef90	UniRef90_UPI001D05D211	helix-turn-helix transcriptional regulator	NA
UHGV-0195269_12	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0195269_12	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0195269_12	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0195269_13	UniRef90	UniRef90_UPI0018995761	helix-turn-helix transcriptional regulator	NA
UHGV-0195269_13	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0195269_14	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0195269_14	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0195269_14	UniRef90	UniRef90_A0A396LJD2	Bro-N domain-containing protein	NA
UHGV-0195269_14	eggNOG-mapper	663952.SDD27957_09050	COG3617 Prophage antirepressor	NA
UHGV-0195269_14	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0195269_14	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0195269_14	COG	COG3617	Prophage antirepressor	NA
UHGV-0195269_14	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0195269_16	UniRef90	UniRef90_A0A367GIH6	HTH cro/C1-type domain-containing protein	NA
UHGV-0195269_16	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0195269_16	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0195269_17	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0195269_17	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0195269_19	PHROG	phrog_4433	NA	unknown function
UHGV-0195269_19	eggNOG-mapper	645991.Sgly_0315	regulation of DNA-templated transcription, elongation	NA
UHGV-0195269_19	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0195269_19	Structural annotation	NF007410	NA	NA
UHGV-0195269_22	eggNOG-mapper	1041142.ATTP01000043_gene5324	NA	NA
UHGV-0195269_23	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0195269_23	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0195269_23	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0195269_23	Structural annotation	PF05772	NA	NA
UHGV-0195269_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0195269_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0195269_24	UniRef90	UniRef90_A0A1Q6T150	Single-stranded DNA-binding protein	NA
UHGV-0195269_24	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0195269_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0195269_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0195269_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0195269_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0195269_24	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0195269_25	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0195269_25	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0195269_25	Structural annotation	PF07106, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0195269_26	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0195269_26	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0195269_26	UniRef90	UniRef90_UPI000C7E331E	replicative DNA helicase	NA
UHGV-0195269_26	eggNOG-mapper	665956.HMPREF1032_01442	Participates in initiation and elongation during chromosome replication	NA
UHGV-0195269_26	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0195269_26	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0195269_26	COG	COG0305	Replicative DNA helicase	NA
UHGV-0195269_26	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0195269_29	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0195269_29	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0195269_29	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0195269_29	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0195269_29	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0195269_29	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0195269_29	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0195269_32	Structural annotation	PF16069	NA	NA
UHGV-0195269_37	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0195269_37	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-0195269_37	Pfam	PF07374	NA	DUF1492
UHGV-0195269_37	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0195269_37	Structural annotation	PF04545, PF18323, MF_00674, NF009172, COG1191	NA	NA
UHGV-0195269_38	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0195269_38	UniRef90	UniRef90_UPI001C01192B	DNA adenine methylase	NA
UHGV-0195269_38	eggNOG-mapper	1236504.HMPREF2132_01695	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0195269_38	PADLOC	MTase_II_00075	Type II methyltransferase	RM
UHGV-0195269_38	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0195269_38	Structural annotation	PF02086, NF008152, COG0338	NA	NA
UHGV-0195269_39	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0195269_39	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0195269_39	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0195269_39	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0195269_39	Structural annotation	PF16677	NA	NA
UHGV-0195269_40	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0195269_40	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0195269_40	UniRef90	UniRef90_UPI001C3B9235	PBSX family phage terminase large subunit	NA
UHGV-0195269_40	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-0195269_40	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0195269_40	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0195269_40	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0195269_40	COG	COG1783	Phage terminase large subunit	NA
UHGV-0195269_40	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0195269_41	PHROG	phrog_64	portal protein	head and packaging
UHGV-0195269_41	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0195269_41	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0195269_41	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0195269_41	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0195269_42	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0195269_42	UniRef90	UniRef90_A0A3A9EHQ6	Phage_Mu_F domain-containing protein	NA
UHGV-0195269_42	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0195269_42	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0195269_42	COG	COG2369	NA	NA
UHGV-0195269_42	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0195269_43	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0195269_43	UniRef90	UniRef90_A0A3A9EIF3	HK97 gp10 family phage protein	NA
UHGV-0195269_43	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0195269_43	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0195269_43	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0195269_43	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0195269_44	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0195269_44	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0195269_44	Structural annotation	PF06810	NA	NA
UHGV-0195269_45	PHROG	phrog_544	major head protein	head and packaging
UHGV-0195269_45	UniRef90	UniRef90_UPI0019576143	N4-gp56 family major capsid protein	NA
UHGV-0195269_45	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-0195269_45	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0195269_45	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0195269_47	PHROG	phrog_17977	NA	unknown function
UHGV-0195269_47	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0195269_47	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0195269_48	PHROG	phrog_17405	head protein	head and packaging
UHGV-0195269_48	Structural annotation	PF11367	NA	NA
UHGV-0195269_49	PHROG	phrog_885	major tail protein	tail
UHGV-0195269_49	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0195269_49	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0195269_49	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0195269_50	PHROG	phrog_18646	NA	unknown function
UHGV-0195269_52	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0195269_52	UniRef90	UniRef90_A0A8A6QM79	Phage tail tape measure protein	NA
UHGV-0195269_52	eggNOG-mapper	411483.FAEPRAA2165_01911	Phage tail tape measure protein, TP901 family	NA
UHGV-0195269_52	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0195269_52	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0195269_52	COG	COG5283	Phage-related tail protein	NA
UHGV-0195269_52	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0195269_53	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0195269_53	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0195269_53	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-0195269_53	COG	COG4722	Phage-related protein YomH	NA
UHGV-0195269_53	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0195269_54	PHROG	phrog_538	minor tail protein	tail
UHGV-0195269_54	UniRef90	UniRef90_A0A6B9SRK1	Endopeptidase tail protein	NA
UHGV-0195269_54	eggNOG-mapper	411902.CLOBOL_03869	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0195269_54	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0195269_54	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0195269_55	PHROG	phrog_9534	head protein	head and packaging
UHGV-0195269_55	UniRef90	UniRef90_A0A0E0TFT0	Phage-related putative tail protein	NA
UHGV-0195269_55	eggNOG-mapper	491915.Aflv_0675	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0195269_55	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0195269_58	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0195269_58	Structural annotation	NF040910	NA	NA
UHGV-0195269_60	PHROG	phrog_17147	NA	unknown function
UHGV-0195269_60	UniRef90	UniRef90_A0A1M6MWL0	N-terminal domain of peptidoglycan hydrolase CwlO-containing protein	NA
UHGV-0195269_60	eggNOG-mapper	411459.RUMOBE_01720	NA	NA
UHGV-0195269_63	KOfam	K07273	acm; lysozyme	NA
UHGV-0195269_63	PHROG	phrog_291	endolysin	lysis
UHGV-0195269_63	UniRef90	UniRef90_A0A1Q6T343	Peptidase_M23 domain-containing protein	NA
UHGV-0195269_63	eggNOG-mapper	665956.HMPREF1032_02708	NA	NA
UHGV-0195269_63	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0195269_63	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0195269_63	Structural annotation	PF01551, PF01183, NF040883, COG0739, COG3757	NA	NA
UHGV-0195269_64	eggNOG-mapper	97138.C820_00591	NA	NA
UHGV-0195269_65	PHROG	phrog_13256	NA	unknown function
UHGV-0195269_65	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0195269_66	KOfam	K07684	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	NA
UHGV-0195269_66	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0195269_66	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0195269_67	PHROG	phrog_3754	NA	unknown function
UHGV-0195269_67	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0195269_68	PHROG	phrog_21718	NA	unknown function
UHGV-0195269_68	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0195269_69	PHROG	phrog_22984	NA	unknown function

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0195269	Yes	41,756 bps	50.83%	100.00%	0.9783
UHGV-0179028	No	36,897 bps	50.88%	89.55%	0.9800