vOTU-047320

Overview

vOTU representative UHGV-0195683

No. of genomes 3

Genome length 43,550 bps

Completeness 100.00% (complete)

Host Holdemanella

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-047320
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00062 › vSUBFAM-00170 › vGENUS-00088 › vSUBGEN-10551 › vOTU-047320
Host taxonomy	Bacteria › Firmicutes › Bacilli › Erysipelotrichales › Erysipelotrichaceae › Holdemanella
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0195683
BioSample	SAMN04571727
Genome length	43,550 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	74
CDS density	88.87%
tRNA count	2
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0195683_1	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0195683_1	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0195683_1	UniRef90	UniRef90_A0A395WA05	XRE family transcriptional regulator	NA
UHGV-0195683_1	eggNOG-mapper	999413.HMPREF1094_02045	Helix-turn-helix XRE-family like proteins	NA
UHGV-0195683_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0195683_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0195683_1	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0195683_2	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0195683_2	UniRef90	UniRef90_UPI00191E8510	Ltp family lipoprotein	NA
UHGV-0195683_2	eggNOG-mapper	658086.HMPREF0994_06731	Host cell surface-exposed lipoprotein	NA
UHGV-0195683_2	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0195683_2	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0195683_2	Structural annotation	PF18933, PF02631, MF_02248, MF_01114, NF008627, NF001062, COG5435, COG2137	NA	NA
UHGV-0195683_4	UniRef90	UniRef90_A0A413CSC4	PBECR3 domain-containing protein	NA
UHGV-0195683_4	eggNOG-mapper	796940.HMPREF9628_02206	NA	NA
UHGV-0195683_4	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0195683_4	Structural annotation	PF18812, COG2929	NA	NA
UHGV-0195683_5	KOfam	K14059	int; integrase	NA
UHGV-0195683_5	PHROG	phrog_1	integrase	integration and excision
UHGV-0195683_5	UniRef90	UniRef90_A0A395WBW7	Site-specific integrase	NA
UHGV-0195683_5	eggNOG-mapper	1235796.C815_00955	DNA integration	NA
UHGV-0195683_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0195683_5	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0195683_5	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0195683_6	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0195683_6	PHROG	phrog_7698	endolysin	lysis
UHGV-0195683_6	UniRef90	UniRef90_UPI001D0AA402	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0195683_6	eggNOG-mapper	1125712.HMPREF1316_2631	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0195683_6	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0195683_6	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0195683_6	Structural annotation	COG5632	NA	NA
UHGV-0195683_8	PHROG	phrog_443	holin	lysis
UHGV-0195683_8	UniRef90	UniRef90_A0A2U2ELA1	Membrane protein	NA
UHGV-0195683_8	eggNOG-mapper	476272.RUMHYD_01759	Putative lactococcus lactis phage r1t holin	NA
UHGV-0195683_8	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0195683_8	Structural annotation	PF16945	NA	NA
UHGV-0195683_11	PHROG	phrog_24451	NA	unknown function
UHGV-0195683_11	eggNOG-mapper	908340.HMPREF9406_2565	NA	NA
UHGV-0195683_12	PHROG	phrog_4492	tail fiber protein	tail
UHGV-0195683_12	eggNOG-mapper	931276.Cspa_c10280	nuclear chromosome segregation	NA
UHGV-0195683_12	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0195683_12	Structural annotation	PF20086, TIGR04362	NA	NA
UHGV-0195683_14	PHROG	phrog_24103	NA	unknown function
UHGV-0195683_14	eggNOG-mapper	1118055.CAGU01000013_gene761	NA	NA
UHGV-0195683_16	PHROG	phrog_15594	NA	unknown function
UHGV-0195683_16	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-0195683_16	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0195683_17	eggNOG-mapper	1232452.BAIB02000007_gene1610	NA	NA
UHGV-0195683_18	Structural annotation	PF16407, TIGR02657, COG3794	NA	NA
UHGV-0195683_19	Structural annotation	PF05895, MF_04116, NF010681, COG1361	NA	NA
UHGV-0195683_20	eggNOG-mapper	537007.BLAHAN_05252	NA	NA
UHGV-0195683_20	Structural annotation	PF10651, COG5513	NA	NA
UHGV-0195683_21	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0195683_21	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-0195683_21	Pfam	PF14200	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
UHGV-0195683_21	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0195683_21	COG	COG4926	Phage-related protein	NA
UHGV-0195683_21	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0195683_22	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0195683_22	UniRef90	UniRef90_A0A1C6JHE5	Phage-related protein	NA
UHGV-0195683_22	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0195683_22	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0195683_22	COG	COG4722	Phage-related protein YomH	NA
UHGV-0195683_22	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0195683_23	KOfam	K10402	KIF20; kinesin family member 20	NA
UHGV-0195683_23	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0195683_23	UniRef90	UniRef90_A0A395WD11	Phage tail tape measure protein	NA
UHGV-0195683_23	eggNOG-mapper	411490.ANACAC_00710	Phage tail tape measure protein, TP901 family	NA
UHGV-0195683_23	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0195683_23	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0195683_23	COG	COG5283	Phage-related tail protein	NA
UHGV-0195683_23	Structural annotation	PF10145, TIGR01760, TIGR02971, COG5280	NA	NA
UHGV-0195683_24	PHROG	phrog_709	NA	unknown function
UHGV-0195683_24	Structural annotation	PF11836	NA	NA
UHGV-0195683_25	PHROG	phrog_88	major tail protein	tail
UHGV-0195683_25	UniRef90	UniRef90_A0A395WA58	Phage tail protein	NA
UHGV-0195683_25	eggNOG-mapper	1033744.CAEL01000029_gene1276	Phage major tail protein, phi13 family	NA
UHGV-0195683_25	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0195683_25	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0195683_26	UniRef90	UniRef90_A0A374RUJ8	HK97 gp10 family phage protein	NA
UHGV-0195683_26	eggNOG-mapper	86416.Clopa_0344	NA	NA
UHGV-0195683_26	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0195683_27	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0195683_28	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0195683_28	UniRef90	UniRef90_A0A395WC07	Head-tail adaptor protein	NA
UHGV-0195683_28	eggNOG-mapper	1243664.CAVL020000054_gene3020	head-tail adaptor	NA
UHGV-0195683_28	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0195683_28	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0195683_28	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0195683_29	PHROG	phrog_5223	neck protein	connector
UHGV-0195683_29	UniRef90	UniRef90_A0A374RXD1	DNA-packaging protein	NA
UHGV-0195683_29	Structural annotation	TIGR01560	NA	NA
UHGV-0195683_30	PHROG	phrog_10	major head protein	head and packaging
UHGV-0195683_30	UniRef90	UniRef90_A0A395WF70	Phage major capsid protein	NA
UHGV-0195683_30	eggNOG-mapper	1536774.H70357_10630	Phage capsid family	NA
UHGV-0195683_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0195683_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0195683_30	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0195683_30	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0195683_31	KOfam	K06904	NA	NA
UHGV-0195683_31	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0195683_31	UniRef90	UniRef90_A0A413UET6	HK97 family phage prohead protease	NA
UHGV-0195683_31	eggNOG-mapper	411470.RUMGNA_02064	Caudovirus prohead serine protease	NA
UHGV-0195683_31	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0195683_31	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0195683_31	COG	COG3740	Phage head maturation protease	NA
UHGV-0195683_31	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0195683_32	PHROG	phrog_12	portal protein	head and packaging
UHGV-0195683_32	UniRef90	UniRef90_A0A395W9X2	Phage portal protein	NA
UHGV-0195683_32	eggNOG-mapper	1203606.HMPREF1526_01337	Portal protein	NA
UHGV-0195683_32	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0195683_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0195683_32	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0195683_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0195683_33	UniRef90	UniRef90_A0A395WD03	Terminase large subunit	NA
UHGV-0195683_33	eggNOG-mapper	742740.HMPREF9474_04307	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-0195683_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0195683_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0195683_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0195683_33	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0195683_34	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0195683_34	UniRef90	UniRef90_A0A7C6YMQ8	P27 family phage terminase small subunit	NA
UHGV-0195683_34	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0195683_34	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0195683_34	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0195683_35	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0195683_35	UniRef90	UniRef90_A0A395WA48	HNH endonuclease	NA
UHGV-0195683_35	eggNOG-mapper	1211814.CAPG01000074_gene3460	HNH endonuclease	NA
UHGV-0195683_35	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0195683_35	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0195683_36	UniRef90	UniRef90_A0A374RVC6	XRE family transcriptional regulator	NA
UHGV-0195683_36	eggNOG-mapper	1145276.T479_12115	Helix-turn-helix domain	NA
UHGV-0195683_36	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-0195683_37	PHROG	phrog_2059	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UHGV-0195683_37	UniRef90	UniRef90_A0A395WEU5	Antirestriction protein ArdA	NA
UHGV-0195683_37	eggNOG-mapper	511680.BUTYVIB_00697	NA	NA
UHGV-0195683_37	Pfam	PF07275	Antirestriction protein (ArdA)	ArdA
UHGV-0195683_37	dbAPIS	APIS003	DNA mimetics, i.e. structurally and electrostatically imitate the B-form of DNA and thus function as competitive inhibitors of restriction enzymes.	NA
UHGV-0195683_37	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0195683_37	Structural annotation	PF07275, COG4734	NA	NA
UHGV-0195683_41	eggNOG-mapper	1403948.Q618_VCMC00003G0140	NA	NA
UHGV-0195683_46	PHROG	phrog_4525	NA	unknown function
UHGV-0195683_47	PHROG	phrog_2316	NA	unknown function
UHGV-0195683_47	UniRef90	UniRef90_A0A3E4YBW5	NA	NA
UHGV-0195683_47	eggNOG-mapper	1280676.AUJO01000024_gene3262	NA	NA
UHGV-0195683_47	Structural annotation	PF16475, MF_00436, NF033216	NA	NA
UHGV-0195683_48	Structural annotation	PF10879	NA	NA
UHGV-0195683_50	UniRef90	UniRef90_A0A413UEX6	NA	NA
UHGV-0195683_50	Structural annotation	PF07374, NF008895	NA	NA
UHGV-0195683_53	Structural annotation	PF11061	NA	NA
UHGV-0195683_56	PHROG	phrog_15198	NA	unknown function
UHGV-0195683_56	UniRef90	UniRef90_A0A395WBY6	NA	NA
UHGV-0195683_57	Structural annotation	PF17399	NA	NA
UHGV-0195683_61	PHROG	phrog_173	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UHGV-0195683_61	UniRef90	UniRef90_UPI001D0A0924	dUTP diphosphatase	NA
UHGV-0195683_61	eggNOG-mapper	1087448.Eab7_2034	Protein conserved in bacteria	NA
UHGV-0195683_61	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-0195683_61	COG	COG4508	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	NA
UHGV-0195683_61	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0195683_64	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0195683_64	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0195683_64	UniRef90	UniRef90_A0A395WER8	Bac_DnaA domain-containing protein	NA
UHGV-0195683_64	eggNOG-mapper	1232446.BAIE02000011_gene1611	NA	NA
UHGV-0195683_64	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-0195683_64	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0195683_64	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0195683_65	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0195683_65	UniRef90	UniRef90_A0A395WBX6	Phg_2220_C domain-containing protein	NA
UHGV-0195683_65	eggNOG-mapper	279808.SH2379	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0195683_65	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0195683_65	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0195683_65	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0195683_65	Structural annotation	PF09524, PF08679, MF_01909, TIGR02220, NF040939, COG1675	NA	NA
UHGV-0195683_69	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0195683_69	PHROG	phrog_1	integrase	integration and excision
UHGV-0195683_69	UniRef90	UniRef90_A0A395W9T7	Site-specific integrase	NA
UHGV-0195683_69	eggNOG-mapper	908340.HMPREF9406_2589	Belongs to the 'phage' integrase family	NA
UHGV-0195683_69	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0195683_69	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0195683_69	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-0195683_72	UniRef90	UniRef90_UPI001D14AAA4	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0195683	Yes	43,550 bps	33.06%	100.00%	0.9737
UHGV-1554903	No	11,505 bps	35.67%	25.74%	0.9804
UHGV-1710272	No	10,563 bps	35.44%	23.63%	0.9810