vOTU-047427

Overview

vOTU representative UHGV-0198868

No. of genomes 6

Genome length 41,514 bps

Completeness 100.00% (complete)

Host Gemmiger

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-047427
Number of genomes	6
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 › vSUBFAM-00079 › vGENUS-01678 › vSUBGEN-17063 › vOTU-047427
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Gemmiger
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0198868
BioSample	SAMN00792089
Genome length	41,514 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	71
CDS density	91.73%
tRNA count	2
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0198868_2	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0198868_3	PHROG	phrog_28802	NA	unknown function
UHGV-0198868_3	Structural annotation	PF12510	NA	NA
UHGV-0198868_4	PHROG	phrog_20016	NA	unknown function
UHGV-0198868_4	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0198868_4	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0198868_4	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0198868_5	PHROG	phrog_16490	NA	unknown function
UHGV-0198868_5	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0198868_6	PHROG	phrog_22984	NA	unknown function
UHGV-0198868_7	PHROG	phrog_21718	NA	unknown function
UHGV-0198868_7	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0198868_8	PHROG	phrog_3754	NA	unknown function
UHGV-0198868_8	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0198868_10	eggNOG-mapper	742740.HMPREF9474_00056	NA	NA
UHGV-0198868_10	Pfam	PF18912	Double zinc ribbon domain	DZR_2
UHGV-0198868_10	Structural annotation	COG4068	NA	NA
UHGV-0198868_11	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0198868_11	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0198868_11	UniRef90	UniRef90_A0A3E2XUS7	XRE family transcriptional regulator	NA
UHGV-0198868_11	eggNOG-mapper	1304866.K413DRAFT_0803	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0198868_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0198868_11	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0198868_12	KOfam	K07684	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	NA
UHGV-0198868_12	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0198868_12	COG	COG2909	ATP-, maltotriose- and DNA-dependent transcriptional regulator MalT	NA
UHGV-0198868_12	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0198868_13	PHROG	phrog_1129	holin	lysis
UHGV-0198868_13	UniRef90	UniRef90_A0A3R5ZDU6	Holin	NA
UHGV-0198868_13	eggNOG-mapper	1256908.HMPREF0373_00463	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0198868_13	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0198868_13	Structural annotation	PF06946	NA	NA
UHGV-0198868_14	UniRef90	UniRef90_UPI00102F4BEE	CTP synthase	NA
UHGV-0198868_14	eggNOG-mapper	1042156.CXIVA_01580	NA	NA
UHGV-0198868_15	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-0198868_15	PHROG	phrog_7698	endolysin	lysis
UHGV-0198868_15	UniRef90	UniRef90_E5DTQ2	Putative muramidase	NA
UHGV-0198868_15	eggNOG-mapper	471875.RUMLAC_02257	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0198868_15	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0198868_15	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0198868_15	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0198868_15	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG3023, COG4991	NA	NA
UHGV-0198868_18	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-0198868_18	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0198868_18	Structural annotation	PF10651	NA	NA
UHGV-0198868_20	PHROG	phrog_18444	NA	unknown function
UHGV-0198868_20	UniRef90	UniRef90_A0A7X5CHF3	Peptide chain release factor 2	NA
UHGV-0198868_20	eggNOG-mapper	1294142.CINTURNW_1707	NA	NA
UHGV-0198868_21	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0198868_21	UniRef90	UniRef90_R6GLF8	Phage minor structural protein region	NA
UHGV-0198868_21	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0198868_21	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0198868_21	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0198868_21	COG	COG4926	Phage-related protein	NA
UHGV-0198868_21	Structural annotation	PF14594, PF00629, PF03424, TIGR01665, NF033675, COG4926	NA	NA
UHGV-0198868_22	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0198868_22	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0198868_22	eggNOG-mapper	1444306.JFZC01000034_gene2623	tail component	NA
UHGV-0198868_22	COG	COG4722	Phage-related protein YomH	NA
UHGV-0198868_22	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0198868_23	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0198868_23	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0198868_23	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0198868_23	Structural annotation	PF20155	NA	NA
UHGV-0198868_25	PHROG	phrog_18646	NA	unknown function
UHGV-0198868_26	PHROG	phrog_885	major tail protein	tail
UHGV-0198868_26	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0198868_26	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0198868_26	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0198868_27	PHROG	phrog_17405	head protein	head and packaging
UHGV-0198868_27	Structural annotation	PF11367	NA	NA
UHGV-0198868_28	PHROG	phrog_17977	NA	unknown function
UHGV-0198868_28	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0198868_28	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0198868_30	PHROG	phrog_544	major head protein	head and packaging
UHGV-0198868_30	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0198868_30	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0198868_30	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0198868_31	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0198868_31	Structural annotation	PF06810	NA	NA
UHGV-0198868_32	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0198868_32	UniRef90	UniRef90_R6E548	Prophage pi1 protein 29	NA
UHGV-0198868_32	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0198868_33	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0198868_33	UniRef90	UniRef90_A0A7X5E1T2	HK97 gp10 family phage protein	NA
UHGV-0198868_33	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0198868_33	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0198868_33	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0198868_33	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0198868_34	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0198868_34	UniRef90	UniRef90_A0A7X5E1T7	Phage_Mu_F domain-containing protein	NA
UHGV-0198868_34	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0198868_34	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0198868_34	COG	COG2369	NA	NA
UHGV-0198868_34	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0198868_36	PHROG	phrog_64	portal protein	head and packaging
UHGV-0198868_36	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0198868_36	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0198868_36	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0198868_36	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0198868_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0198868_37	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0198868_37	UniRef90	UniRef90_UPI001C3B9235	PBSX family phage terminase large subunit	NA
UHGV-0198868_37	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-0198868_37	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0198868_37	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0198868_37	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0198868_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-0198868_37	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0198868_40	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0198868_40	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0198868_40	UniRef90	UniRef90_A0A101WI32	Methyltransferase	NA
UHGV-0198868_40	eggNOG-mapper	226185.EF_2114	DNA methylase	NA
UHGV-0198868_40	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0198868_40	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0198868_40	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0198868_40	COG	COG0863	DNA modification methylase	NA
UHGV-0198868_40	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0198868_41	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0198868_41	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-0198868_41	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0198868_41	Structural annotation	PF04545, PF18323, MF_00674, NF009172, COG1191	NA	NA
UHGV-0198868_47	PHROG	phrog_16244	NA	unknown function
UHGV-0198868_48	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0198868_49	PHROG	phrog_9958	NA	unknown function
UHGV-0198868_49	UniRef90	UniRef90_UPI001D08A241	NA	NA
UHGV-0198868_49	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-0198868_49	Structural annotation	PF19789	NA	NA
UHGV-0198868_53	PHROG	phrog_824	NA	unknown function
UHGV-0198868_53	UniRef90	UniRef90_UPI00189BCDD7	VRR-NUC domain-containing protein	NA
UHGV-0198868_53	eggNOG-mapper	665956.HMPREF1032_00132	VRR_NUC	NA
UHGV-0198868_53	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0198868_55	PHROG	phrog_16304	NA	unknown function
UHGV-0198868_55	UniRef90	UniRef90_UPI001E560709	NA	NA
UHGV-0198868_55	eggNOG-mapper	1226322.HMPREF1545_00016	HNH endonuclease	NA
UHGV-0198868_55	Pfam	PF19808	NA	DUF6291
UHGV-0198868_55	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0198868_55	Structural annotation	PF19808	NA	NA
UHGV-0198868_56	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0198868_56	UniRef90	UniRef90_A0A329URB3	Lactamase_B domain-containing protein	NA
UHGV-0198868_56	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0198868_56	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0198868_56	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0198868_56	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0198868_57	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0198868_57	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0198868_57	UniRef90	UniRef90_UPI0012DD5B14	recombinase RecT	NA
UHGV-0198868_57	eggNOG-mapper	1408437.JNJN01000039_gene372	RecT family	NA
UHGV-0198868_57	Pfam	PF03837	RecT family	RecT
UHGV-0198868_57	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0198868_57	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0198868_57	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0198868_58	PHROG	phrog_674	NA	unknown function
UHGV-0198868_58	UniRef90	UniRef90_UPI000553F60F	NA	NA
UHGV-0198868_58	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0198868_58	Pfam	PF07083	NA	DUF1351
UHGV-0198868_58	Structural annotation	PF07083	NA	NA
UHGV-0198868_59	PHROG	phrog_7964	NA	unknown function
UHGV-0198868_59	UniRef90	UniRef90_C6L9Y5	Bacterial transferase hexapeptide repeat protein	NA
UHGV-0198868_59	eggNOG-mapper	478749.BRYFOR_05427	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0198868_59	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0198868_59	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0198868_60	Structural annotation	PF17259	NA	NA
UHGV-0198868_61	UniRef90	UniRef90_A0A367GIH6	HTH cro/C1-type domain-containing protein	NA
UHGV-0198868_61	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0198868_61	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0198868_61	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0198868_63	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0198868_63	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-0198868_63	eggNOG-mapper	665950.HMPREF1025_02561	sequence-specific DNA binding	NA
UHGV-0198868_63	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0198868_63	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0198868_63	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0198868_64	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0198868_68	eggNOG-mapper	500635.MITSMUL_05163	NA	NA
UHGV-0198868_70	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0198868_70	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0198868_71	KOfam	K14059	int; integrase	NA
UHGV-0198868_71	PHROG	phrog_1	integrase	integration and excision
UHGV-0198868_71	UniRef90	UniRef90_A0A1Y4T0F9	Tyr recombinase domain-containing protein	NA
UHGV-0198868_71	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0198868_71	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0198868_71	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0198868_71	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0198868	Yes	41,514 bps	50.20%	100.00%	0.9800
UHGV-1429937	No	41,772 bps	50.32%	99.90%	0.9803
UHGV-0128862	No	28,868 bps	51.24%	70.63%	0.9804
UHGV-1342005	No	27,394 bps	51.34%	67.03%	0.9803
UHGV-1405293	No	25,075 bps	50.77%	61.35%	0.9796
UHGV-0128867	No	12,874 bps	48.17%	31.20%	0.9759