vOTU-047449

Overview

vOTU representative UHGV-0199318

No. of genomes 7

Genome length 37,852 bps

Completeness 100.00% (complete)

Host Ruminococcus B gnavus

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-047449
Number of genomes	7
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 › vSUBFAM-00099 › vGENUS-13513 › vSUBGEN-21770 › vOTU-047449
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Lachnospirales › Lachnospiraceae › Ruminococcus B › Ruminococcus B gnavus
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0199318
BioSample	SAMN05826880
Genome length	37,852 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	55
CDS density	91.51%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0199318_1	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0199318_1	UniRef90	UniRef90_UPI001C8EB1BF	tape measure protein	NA
UHGV-0199318_1	eggNOG-mapper	742765.HMPREF9457_02136	nuclear chromosome segregation	NA
UHGV-0199318_1	COG	COG1511	NA	NA
UHGV-0199318_1	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0199318_2	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0199318_2	UniRef90	UniRef90_A7B3U8	Putative phage tail component domain protein	NA
UHGV-0199318_2	eggNOG-mapper	411470.RUMGNA_02229	NA	NA
UHGV-0199318_2	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0199318_2	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0199318_2	COG	COG4722	Phage-related protein YomH	NA
UHGV-0199318_2	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0199318_3	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0199318_3	UniRef90	UniRef90_UPI000467D60B	collagen-like protein	NA
UHGV-0199318_3	eggNOG-mapper	411470.RUMGNA_02230	NA	NA
UHGV-0199318_3	Structural annotation	PF14594, PF08931, PF13895, TIGR01665, TIGR04488, COG4926	NA	NA
UHGV-0199318_4	eggNOG-mapper	608534.GCWU000341_02271	NA	NA
UHGV-0199318_5	KOfam	K07486	K07486; transposase	NA
UHGV-0199318_5	PHROG	phrog_2199	transposase	integration and excision
UHGV-0199318_5	UniRef90	UniRef90_R9IQU9	DEDD_Tnp_IS110 domain-containing protein	NA
UHGV-0199318_5	eggNOG-mapper	397288.C806_04490	Transposase	NA
UHGV-0199318_5	Pfam	PF01548	Transposase	DEDD_Tnp_IS110
UHGV-0199318_5	Pfam	PF02371	Transposase IS116/IS110/IS902 family	Transposase_20
UHGV-0199318_5	NCBIFam	NF033542.1	IS110 family transposase	NA
UHGV-0199318_5	COG	COG3547	Transposase	NA
UHGV-0199318_5	Structural annotation	PF01548, PF02371, MF_00651, NF033542, COG3547	NA	NA
UHGV-0199318_6	PHROG	phrog_10091	holin	lysis
UHGV-0199318_6	UniRef90	UniRef90_A0A2N5P008	Phage holin	NA
UHGV-0199318_6	eggNOG-mapper	428127.EUBDOL_01206	COG5546 Small integral membrane protein	NA
UHGV-0199318_6	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0199318_6	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0199318_6	COG	COG5546	NA	NA
UHGV-0199318_6	Structural annotation	COG5546	NA	NA
UHGV-0199318_7	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0199318_7	PHROG	phrog_435	endolysin	lysis
UHGV-0199318_7	UniRef90	UniRef90_A0A415SBY0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0199318_7	eggNOG-mapper	411470.RUMGNA_02814	Ami_3	NA
UHGV-0199318_7	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0199318_7	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0199318_7	Structural annotation	PF01520, MF_00417, TIGR02883, COG0860	NA	NA
UHGV-0199318_8	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0199318_8	PHROG	phrog_95	integrase	integration and excision
UHGV-0199318_8	UniRef90	UniRef90_A7B3P5	Resolvase, N-terminal domain protein	NA
UHGV-0199318_8	eggNOG-mapper	411470.RUMGNA_02175	Resolvase, N terminal domain	NA
UHGV-0199318_8	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0199318_8	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0199318_8	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0199318_8	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0199318_9	PHROG	phrog_806	NA	unknown function
UHGV-0199318_9	UniRef90	UniRef90_S2YED8	NA	NA
UHGV-0199318_9	eggNOG-mapper	411468.CLOSCI_01239	NA	NA
UHGV-0199318_9	Pfam	PF16729	NA	DUF5067
UHGV-0199318_9	Structural annotation	PF16729, MF_00791, NF003967, COG2967	NA	NA
UHGV-0199318_11	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0199318_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0199318_11	UniRef90	UniRef90_A0A2N5NVN2	HTH cro/C1-type domain-containing protein	NA
UHGV-0199318_11	eggNOG-mapper	1235790.C805_00012	Helix-turn-helix domain	NA
UHGV-0199318_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0199318_11	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0199318_11	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0199318_14	PHROG	phrog_28292	NA	unknown function
UHGV-0199318_14	UniRef90	UniRef90_A0A8B3BZ84	3-hydroxyacyl-CoA dehydrogenase	NA
UHGV-0199318_14	eggNOG-mapper	500632.CLONEX_01438	NA	NA
UHGV-0199318_15	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0199318_15	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0199318_15	UniRef90	UniRef90_UPI0015713293	phage antirepressor KilAC domain-containing protein	NA
UHGV-0199318_15	eggNOG-mapper	411470.RUMGNA_02184	Phage antirepressor protein	NA
UHGV-0199318_15	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0199318_15	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0199318_15	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0199318_15	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0199318_16	eggNOG-mapper	1235790.C805_00014	NA	NA
UHGV-0199318_20	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0199318_20	PHROG	phrog_1499	NA	unknown function
UHGV-0199318_20	UniRef90	UniRef90_A0A2N5P5I0	AAA_23 domain-containing protein	NA
UHGV-0199318_20	eggNOG-mapper	742733.HMPREF9469_01850	DNA recombination	NA
UHGV-0199318_20	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0199318_20	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0199318_21	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0199318_21	UniRef90	UniRef90_A0A6N7W7U3	Recombinase RecT	NA
UHGV-0199318_21	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-0199318_21	Pfam	PF03837	RecT family	RecT
UHGV-0199318_21	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0199318_22	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0199318_22	UniRef90	UniRef90_A0A2N5P5E1	NA	NA
UHGV-0199318_22	eggNOG-mapper	33035.JPJF01000071_gene4463	NA	NA
UHGV-0199318_22	Pfam	PF12684	NA	DUF3799
UHGV-0199318_22	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0199318_22	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0199318_23	eggNOG-mapper	742733.HMPREF9469_01847	NA	NA
UHGV-0199318_24	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0199318_24	UniRef90	UniRef90_A0A0F0CCS0	Endodeoxyribonuclease RusA	NA
UHGV-0199318_24	eggNOG-mapper	742733.HMPREF9469_01846	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0199318_24	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0199318_24	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0199318_25	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0199318_25	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0199318_25	UniRef90	UniRef90_A7B3R6	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0199318_25	eggNOG-mapper	411470.RUMGNA_02196	COG COG4570 Holliday junction resolvase	NA
UHGV-0199318_25	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0199318_25	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0199318_25	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0199318_26	PHROG	phrog_1163	NA	unknown function
UHGV-0199318_26	UniRef90	UniRef90_A0A415S878	Replication protein	NA
UHGV-0199318_26	eggNOG-mapper	1042163.BRLA_c031420	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0199318_26	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0199318_26	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0199318_26	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0199318_26	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0199318_26	Structural annotation	PF09681, PF09524, TIGR01714, TIGR02220, COG3756	NA	NA
UHGV-0199318_27	PHROG	phrog_25488	NA	unknown function
UHGV-0199318_27	Structural annotation	PF12844, PF01316, MF_00535, TIGR00270, COG1476	NA	NA
UHGV-0199318_30	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0199318_30	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0199318_30	UniRef90	UniRef90_UPI00046534C2	DNA cytosine methyltransferase	NA
UHGV-0199318_30	eggNOG-mapper	759913.SDSE_1386	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0199318_30	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0199318_30	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0199318_30	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0199318_30	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0199318_30	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0199318_31	UniRef90	UniRef90_A0A894KBW2	LexA_DNA_bind domain-containing protein	NA
UHGV-0199318_31	eggNOG-mapper	97139.C824_00134	NA	NA
UHGV-0199318_32	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0199318_32	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0199318_32	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0199318_32	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0199318_32	Structural annotation	PF14354, TIGR03655, COG3811	NA	NA
UHGV-0199318_35	PHROG	phrog_8684	NA	unknown function
UHGV-0199318_35	UniRef90	UniRef90_A0A415S8F9	YopX domain-containing protein	NA
UHGV-0199318_35	eggNOG-mapper	742723.HMPREF9477_00921	YopX protein	NA
UHGV-0199318_35	Pfam	PF09643	YopX protein	YopX
UHGV-0199318_37	UniRef90	UniRef90_A0A415S8F5	NA	NA
UHGV-0199318_37	eggNOG-mapper	742723.HMPREF9477_00919	NA	NA
UHGV-0199318_37	Pfam	PF04448	NA	DUF551
UHGV-0199318_39	eggNOG-mapper	411470.RUMGNA_02203	NA	NA
UHGV-0199318_41	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0199318_41	UniRef90	UniRef90_A0A1C5X3K2	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0199318_41	eggNOG-mapper	411470.RUMGNA_02205	Sigma-70, region 4	NA
UHGV-0199318_41	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0199318_42	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0199318_42	UniRef90	UniRef90_A0A2N5PKF8	Transposase	NA
UHGV-0199318_42	eggNOG-mapper	411470.RUMGNA_02210	transposase activity	NA
UHGV-0199318_42	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0199318_42	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0199318_42	Structural annotation	PF07141	NA	NA
UHGV-0199318_43	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0199318_43	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0199318_43	UniRef90	UniRef90_A0A2N5PKF3	Terminase	NA
UHGV-0199318_43	eggNOG-mapper	411470.RUMGNA_02211	NA	NA
UHGV-0199318_43	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0199318_43	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0199318_43	COG	COG1783	Phage terminase large subunit	NA
UHGV-0199318_43	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0199318_44	PHROG	phrog_533	portal protein	head and packaging
UHGV-0199318_44	UniRef90	UniRef90_A0A2N5PKH7	Phage capsid protein	NA
UHGV-0199318_44	eggNOG-mapper	658655.HMPREF0988_02564	NA	NA
UHGV-0199318_44	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0199318_45	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0199318_45	UniRef90	UniRef90_A0A2N5PKG3	Minor capsid protein	NA
UHGV-0199318_45	eggNOG-mapper	1235799.C818_04219	Phage minor capsid protein 2	NA
UHGV-0199318_45	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0199318_45	COG	COG2369	NA	NA
UHGV-0199318_45	Structural annotation	PF06152	NA	NA
UHGV-0199318_46	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0199318_46	UniRef90	UniRef90_A0A6N2UWT0	Phage minor structural protein GP20	NA
UHGV-0199318_46	eggNOG-mapper	1304866.K413DRAFT_3037	Phage minor structural protein GP20	NA
UHGV-0199318_46	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0199318_46	Structural annotation	PF06810	NA	NA
UHGV-0199318_47	PHROG	phrog_422	major head protein	head and packaging
UHGV-0199318_47	eggNOG-mapper	658655.HMPREF0988_02560	NA	NA
UHGV-0199318_47	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0199318_48	UniRef90	UniRef90_UPI001D05A857	head fiber protein	NA
UHGV-0199318_48	eggNOG-mapper	1232443.BAIA02000078_gene28	domain, Protein	NA
UHGV-0199318_48	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0199318_48	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0199318_49	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0199318_49	eggNOG-mapper	411462.DORLON_00785	NA	NA
UHGV-0199318_50	PHROG	phrog_3366	NA	unknown function
UHGV-0199318_50	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-0199318_50	Pfam	PF20536	NA	DUF6751
UHGV-0199318_50	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0199318_51	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0199318_51	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-0199318_51	eggNOG-mapper	411470.RUMGNA_02222	NA	NA
UHGV-0199318_51	Structural annotation	PF11114	NA	NA
UHGV-0199318_52	PHROG	phrog_3266	tail completion	connector
UHGV-0199318_52	eggNOG-mapper	411470.RUMGNA_02223	NA	NA
UHGV-0199318_52	Structural annotation	PF12691	NA	NA
UHGV-0199318_53	PHROG	phrog_3099	NA	unknown function
UHGV-0199318_53	eggNOG-mapper	411470.RUMGNA_02224	NA	NA
UHGV-0199318_53	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0199318_54	PHROG	phrog_4450	NA	unknown function
UHGV-0199318_54	UniRef90	UniRef90_UPI001F2808D2	AP endonuclease	NA
UHGV-0199318_54	eggNOG-mapper	1235792.C808_05374	NA	NA
UHGV-0199318_54	Pfam	PF20378	NA	DUF6673
UHGV-0199318_54	Structural annotation	PF20378	NA	NA
UHGV-0199318_55	PHROG	phrog_706	NA	unknown function
UHGV-0199318_55	UniRef90	UniRef90_UPI00129D4CEC	Gp15 family bacteriophage protein	NA
UHGV-0199318_55	eggNOG-mapper	411470.RUMGNA_02226	COG NOG24969 non supervised orthologous group	NA
UHGV-0199318_55	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0199318_55	Structural annotation	PF06854	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0199318	Yes	37,852 bps	41.88%	100.00%	0.9815
UHGV-1463667	No	34,720 bps	42.21%	89.46%	0.9807
UHGV-0218279	No	25,225 bps	42.50%	67.34%	0.9822
UHGV-0143410	No	24,462 bps	42.59%	65.01%	0.9829
UHGV-1392754	No	24,462 bps	42.59%	65.01%	0.9829
UHGV-2093414	No	16,958 bps	43.71%	44.77%	0.9829
UHGV-0223269	No	15,627 bps	43.77%	41.71%	0.9831