vOTU-047454

Overview

vOTU representative UHGV-0199394

No. of genomes 13

Genome length 45,848 bps

Completeness 100.00% (complete)

Host Dorea A longicatena

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-047454
Number of genomes	13
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00027 › vSUBFAM-00190 › vGENUS-01600 › vSUBGEN-00932 › vOTU-047454
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Lachnospirales › Lachnospiraceae › Dorea A › Dorea A longicatena
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0199394
BioSample	SAMN06164954
Genome length	45,848 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	76
CDS density	88.45%
tRNA count	2
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0199394_1	PHROG	phrog_6280	NA	unknown function
UHGV-0199394_1	UniRef90	UniRef90_A0A8J6PH67	Esterase	NA
UHGV-0199394_1	eggNOG-mapper	1443125.Z962_12410	NA	NA
UHGV-0199394_2	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0199394_2	UniRef90	UniRef90_A0A7U9JT69	Phage tail tape measure protein, TP901 family	NA
UHGV-0199394_2	eggNOG-mapper	1304866.K413DRAFT_1234	tail tape measure protein	NA
UHGV-0199394_2	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0199394_2	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0199394_2	COG	COG5283	Phage-related tail protein	NA
UHGV-0199394_2	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-0199394_3	PHROG	phrog_36410	NA	unknown function
UHGV-0199394_3	eggNOG-mapper	706433.HMPREF9430_01256	Phage tail protein	NA
UHGV-0199394_3	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0199394_4	PHROG	phrog_538	minor tail protein	tail
UHGV-0199394_4	UniRef90	UniRef90_A0A843GTT7	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0199394_4	eggNOG-mapper	1321782.HMPREF1986_02278	NA	NA
UHGV-0199394_4	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0199394_5	PHROG	phrog_1220	head protein	head and packaging
UHGV-0199394_5	UniRef90	UniRef90_A0A6B3YJZ4	Phage tail protein (Fragment)	NA
UHGV-0199394_5	eggNOG-mapper	999411.HMPREF1092_00929	COG NOG18825 non supervised orthologous group	NA
UHGV-0199394_5	Structural annotation	PF20747	NA	NA
UHGV-0199394_6	UniRef90	UniRef90_R6M754	Leucine-rich repeat (LRR) protein	NA
UHGV-0199394_6	eggNOG-mapper	1688.BCUN_1858	Listeria-Bacteroides repeat domain (List_Bact_rpt)	NA
UHGV-0199394_6	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0199394_6	Structural annotation	PF09479, PF00703, NF033188	NA	NA
UHGV-0199394_12	PHROG	phrog_16490	NA	unknown function
UHGV-0199394_12	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0199394_15	Structural annotation	PF07408, MF_01560, NF010187, COG4838	NA	NA
UHGV-0199394_19	Structural annotation	PF06003, MF_01077, NF037951, COG1862	NA	NA
UHGV-0199394_21	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0199394_21	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0199394_21	UniRef90	UniRef90_A0A843GN62	Toprim domain-containing protein	NA
UHGV-0199394_21	eggNOG-mapper	931626.Awo_c24320	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-0199394_21	PADLOC	drt-UG29	DRT	DRT
UHGV-0199394_21	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0199394_21	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0199394_21	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0199394_21	Structural annotation	PF01807, PF13155, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-0199394_23	Structural annotation	PF08804	NA	NA
UHGV-0199394_24	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-0199394_24	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0199394_24	UniRef90	UniRef90_A0A843GPT9	DNA-directed DNA polymerase	NA
UHGV-0199394_24	eggNOG-mapper	224324.aq_1008	TIGRFAM DNA polymerase III, alpha subunit	NA
UHGV-0199394_24	Pfam	PF02811	PHP domain	PHP
UHGV-0199394_24	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-0199394_24	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-0199394_24	Pfam	PF14579	Helix-hairpin-helix motif	HHH_6
UHGV-0199394_24	NCBIFam	TIGR00594.1	DNA polymerase III subunit alpha	NA
UHGV-0199394_24	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-0199394_24	Structural annotation	PF07733, PF02811, PF17657, PF14579, MF_01902, TIGR00594, COG0587	NA	NA
UHGV-0199394_25	KOfam	K03553	recA; recombination protein RecA	NA
UHGV-0199394_25	PHROG	phrog_97	UvsX-like recombinase	other
UHGV-0199394_25	UniRef90	UniRef90_UPI001BCFCE00	recombinase RecA	NA
UHGV-0199394_25	eggNOG-mapper	879305.HMPREF9290_1573	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	NA
UHGV-0199394_25	Pfam	PF00154	recA bacterial DNA recombination protein	RecA
UHGV-0199394_25	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0199394_25	Structural annotation	PF00154, MF_00268, TIGR02012, COG0468	NA	NA
UHGV-0199394_26	Structural annotation	PF01775, MF_00273, NF010188, COG2157	NA	NA
UHGV-0199394_27	PHROG	phrog_2506	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0199394_27	Structural annotation	PF01930, MF_03030, TIGR00372, COG5377	NA	NA
UHGV-0199394_30	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0199394_30	UniRef90	UniRef90_A0A2N5H4R9	Sugar-phospahte nucleotidyltransferase	NA
UHGV-0199394_30	eggNOG-mapper	1235797.C816_04032	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0199394_30	Pfam	PF13651	Adenine-specific methyltransferase EcoRI	EcoRI_methylase
UHGV-0199394_30	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0199394_30	Structural annotation	PF13651, MF_00607, NF000077, COG0286	NA	NA
UHGV-0199394_34	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0199394_34	PHROG	phrog_5696	NA	unknown function
UHGV-0199394_34	UniRef90	UniRef90_A0A6N9P8V9	SAM-dependent DNA methyltransferase	NA
UHGV-0199394_34	eggNOG-mapper	742733.HMPREF9469_05064	N-6 DNA Methylase	NA
UHGV-0199394_34	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0199394_34	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0199394_34	Structural annotation	COG0286	NA	NA
UHGV-0199394_35	PHROG	phrog_159	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0199394_35	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0199394_41	PHROG	phrog_6466	DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0199394_41	UniRef90	UniRef90_A0A374ABN1	DNA_ligase_aden domain-containing protein	NA
UHGV-0199394_41	eggNOG-mapper	691965.D4P7L3_9CAUD	helicase activity	NA
UHGV-0199394_44	PHROG	phrog_2002	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0199394_44	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0199394_45	Structural annotation	PF21138, NF009630, COG2375	NA	NA
UHGV-0199394_48	Structural annotation	PF10922	NA	NA
UHGV-0199394_49	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0199394_49	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0199394_49	UniRef90	UniRef90_A0A2R6Y461	Ribonuclease H	NA
UHGV-0199394_49	eggNOG-mapper	632518.Calow_1132	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0199394_49	Pfam	PF00075	RNase H	RNase_H
UHGV-0199394_49	COG	COG0328	Ribonuclease HI	NA
UHGV-0199394_49	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0199394_50	Structural annotation	PF14084	NA	NA
UHGV-0199394_53	PHROG	phrog_2412	NA	unknown function
UHGV-0199394_53	UniRef90	UniRef90_UPI0012B5FF1C	stress-induced protein	NA
UHGV-0199394_53	eggNOG-mapper	120574.Q8SBI2_9CAUD	NA	NA
UHGV-0199394_54	PHROG	phrog_26445	NA	unknown function
UHGV-0199394_54	eggNOG-mapper	97139.C824_00034	NA	NA
UHGV-0199394_55	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0199394_55	eggNOG-mapper	665950.HMPREF1025_01374	NA	NA
UHGV-0199394_58	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0199394_58	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0199394_58	UniRef90	UniRef90_A0A349YI29	PBSX family phage terminase large subunit	NA
UHGV-0199394_58	eggNOG-mapper	1443122.Z958_p0035	Phage terminase, large subunit, PBSX family	NA
UHGV-0199394_58	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0199394_58	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0199394_58	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0199394_58	COG	COG1783	Phage terminase large subunit	NA
UHGV-0199394_58	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0199394_61	PHROG	phrog_443	holin	lysis
UHGV-0199394_61	UniRef90	UniRef90_UPI000C75746C	holin	NA
UHGV-0199394_61	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0199394_61	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0199394_61	Structural annotation	PF16945	NA	NA
UHGV-0199394_62	PHROG	phrog_21357	endolysin	lysis
UHGV-0199394_62	UniRef90	UniRef90_D4MVQ6	CHAP domain	NA
UHGV-0199394_62	eggNOG-mapper	1007096.BAGW01000017_gene816	CHAP domain	NA
UHGV-0199394_62	Pfam	PF05257	CHAP domain	CHAP
UHGV-0199394_62	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0199394_62	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0199394_62	Structural annotation	PF01471, PF00877, TIGR02594, TIGR03979, COG3942	NA	NA
UHGV-0199394_63	PHROG	phrog_64	portal protein	head and packaging
UHGV-0199394_63	UniRef90	UniRef90_A0A843JBG3	Phage portal protein	NA
UHGV-0199394_63	eggNOG-mapper	1567015.A0A0A7RUQ6_9VIRU	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0199394_63	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0199394_63	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0199394_65	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0199394_65	UniRef90	UniRef90_A0A1G9U003	Phage Mu protein F like protein	NA
UHGV-0199394_65	eggNOG-mapper	748727.CLJU_c31360	Portal protein	NA
UHGV-0199394_65	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0199394_68	Structural annotation	MF_02110	NA	NA
UHGV-0199394_69	PHROG	phrog_909	major head protein	head and packaging
UHGV-0199394_69	UniRef90	UniRef90_A0A512PLH0	Putative structural protein-phage associated	NA
UHGV-0199394_69	eggNOG-mapper	1158612.I580_01911	NA	NA
UHGV-0199394_69	Structural annotation	PF02924	NA	NA
UHGV-0199394_70	PHROG	phrog_29	major head protein	head and packaging
UHGV-0199394_70	UniRef90	UniRef90_UPI00082C04A5	major capsid protein	NA
UHGV-0199394_70	eggNOG-mapper	1158612.I580_01912	Phage major capsid protein E	NA
UHGV-0199394_70	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0199394_70	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0199394_71	Structural annotation	PF07498	NA	NA
UHGV-0199394_72	PHROG	phrog_4020	NA	unknown function
UHGV-0199394_72	eggNOG-mapper	445335.CBN_3083	NA	NA
UHGV-0199394_73	PHROG	phrog_8435	NA	unknown function
UHGV-0199394_73	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0199394_74	eggNOG-mapper	1443122.Z958_05860	NA	NA
UHGV-0199394_74	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0199394_75	PHROG	phrog_7585	NA	unknown function
UHGV-0199394_75	eggNOG-mapper	1196322.A370_04060	NA	NA
UHGV-0199394_75	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0199394_76	PHROG	phrog_6686	tail tube protein	tail
UHGV-0199394_76	UniRef90	UniRef90_A0A1C6KI12	S-l_SbsC_C domain-containing protein	NA
UHGV-0199394_76	eggNOG-mapper	1121342.AUCO01000012_gene1688	NA	NA
UHGV-0199394_76	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0199394	Yes	45,848 bps	33.55%	100.00%	0.9798
UHGV-0273787	No	45,859 bps	33.54%	89.65%	0.9796
UHGV-1570030	No	19,366 bps	34.99%	38.25%	0.9829
UHGV-1564323	No	19,365 bps	35.01%	38.25%	0.9829
UHGV-1666074	No	16,977 bps	34.86%	33.54%	0.9821
UHGV-0164602	No	13,543 bps	32.76%	26.93%	0.9748
UHGV-1797186	No	12,436 bps	32.96%	24.71%	0.9740
UHGV-1825157	No	12,113 bps	33.18%	24.08%	0.9749
UHGV-1575624	No	12,098 bps	33.24%	24.04%	0.9756
UHGV-0167247	No	11,851 bps	33.26%	23.38%	0.9805
UHGV-1564056	No	11,851 bps	33.26%	23.38%	0.9805
UHGV-1649037	No	11,243 bps	35.63%	22.50%	0.9827
UHGV-1626091	No	10,584 bps	36.01%	21.18%	0.9827