vOTU-047463

Overview

vOTU representative UHGV-0199597

No. of genomes 10

Genome length 41,156 bps

Completeness 100.00% (complete)

Host Limivicinus

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-047463
Number of genomes	10
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 › vSUBFAM-00173 › vGENUS-00597 › vSUBGEN-01785 › vOTU-047463
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Oscillospiraceae › Limivicinus
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0199597
BioSample	SAMN00792090
Genome length	41,156 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	70
CDS density	92.67%
tRNA count	2
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0199597_1	PHROG	phrog_4433	NA	unknown function
UHGV-0199597_1	eggNOG-mapper	886882.PPSC2_p0363	regulation of DNA-templated transcription, elongation	NA
UHGV-0199597_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0199597_5	UniRef90	UniRef90_UPI000F0633F9	DNA-binding protein	NA
UHGV-0199597_5	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-0199597_5	Structural annotation	PF09035, TIGR01764	NA	NA
UHGV-0199597_9	Structural annotation	PF09639, TIGR04176	NA	NA
UHGV-0199597_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0199597_11	UniRef90	UniRef90_A0A374HKJ0	XRE family transcriptional regulator	NA
UHGV-0199597_11	eggNOG-mapper	397291.C804_05804	TRANSCRIPTIONal	NA
UHGV-0199597_11	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0199597_11	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0199597_11	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0199597_12	Pfam	PF16729	NA	DUF5067
UHGV-0199597_12	Structural annotation	PF16729, MF_00791, TIGR04087, COG2967	NA	NA
UHGV-0199597_13	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0199597_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0199597_13	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0199597_13	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA
UHGV-0199597_14	KOfam	K14059	int; integrase	NA
UHGV-0199597_14	PHROG	phrog_1	integrase	integration and excision
UHGV-0199597_14	UniRef90	UniRef90_UPI000F051A1D	tyrosine-type recombinase/integrase	NA
UHGV-0199597_14	eggNOG-mapper	693746.OBV_43340	Belongs to the 'phage' integrase family	NA
UHGV-0199597_14	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0199597_14	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0199597_14	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0199597_15	UniRef90	UniRef90_A0A7M1RSZ3	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0199597_15	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0199597_16	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0199597_17	PHROG	phrog_16490	NA	unknown function
UHGV-0199597_17	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0199597_19	eggNOG-mapper	445972.ANACOL_01878	NA	NA
UHGV-0199597_21	PHROG	phrog_199	holin	lysis
UHGV-0199597_21	UniRef90	UniRef90_A0A3C0NPD5	Holin	NA
UHGV-0199597_21	eggNOG-mapper	1121344.JHZO01000003_gene684	toxin secretion phage lysis holin	NA
UHGV-0199597_21	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0199597_21	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0199597_21	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0199597_21	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0199597_22	PHROG	phrog_14030	NA	unknown function
UHGV-0199597_22	UniRef90	UniRef90_A0A316NTC6	PG_binding_1 domain-containing protein	NA
UHGV-0199597_22	eggNOG-mapper	1321782.HMPREF1986_02283	NlpC/P60 family	NA
UHGV-0199597_22	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0199597_22	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0199597_22	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0199597_22	Structural annotation	PF01471, PF05382, NF038080, NF033742, COG3409, COG0791	NA	NA
UHGV-0199597_24	PHROG	phrog_30034	NA	unknown function
UHGV-0199597_24	UniRef90	UniRef90_A0A2Y9CAD1	Carbohydrate binding domain-containing protein	NA
UHGV-0199597_24	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0199597_24	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0199597_24	Structural annotation	PF14600	NA	NA
UHGV-0199597_27	Structural annotation	PF07210, PF01404, TIGR03000, NF038128	NA	NA
UHGV-0199597_28	eggNOG-mapper	1408422.JHYF01000026_gene3527	nuclear chromosome segregation	NA
UHGV-0199597_28	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0199597_29	PHROG	phrog_32744	NA	unknown function
UHGV-0199597_29	eggNOG-mapper	411902.CLOBOL_00124	NA	NA
UHGV-0199597_29	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0199597_30	PHROG	phrog_1194	NA	unknown function
UHGV-0199597_30	eggNOG-mapper	1219626.HMPREF1639_07230	NA	NA
UHGV-0199597_30	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0199597_31	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0199597_31	eggNOG-mapper	1262449.CP6013_2094	phage tail tape measure protein	NA
UHGV-0199597_31	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0199597_31	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0199597_32	PHROG	phrog_706	NA	unknown function
UHGV-0199597_32	UniRef90	UniRef90_A0A2U1BEN4	Bacteriophage Gp15 protein	NA
UHGV-0199597_32	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0199597_32	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0199597_32	Structural annotation	PF06854	NA	NA
UHGV-0199597_33	PHROG	phrog_11299	NA	unknown function
UHGV-0199597_33	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0199597_33	Structural annotation	PF10666	NA	NA
UHGV-0199597_34	PHROG	phrog_3099	NA	unknown function
UHGV-0199597_34	eggNOG-mapper	1235797.C816_04186	NA	NA
UHGV-0199597_34	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0199597_35	PHROG	phrog_3266	tail completion	connector
UHGV-0199597_35	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0199597_35	Structural annotation	PF12691	NA	NA
UHGV-0199597_36	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0199597_36	UniRef90	UniRef90_A0A2U1BEM0	Minor capsid protein	NA
UHGV-0199597_36	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0199597_36	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0199597_36	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0199597_37	PHROG	phrog_3366	NA	unknown function
UHGV-0199597_37	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0199597_37	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0199597_38	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0199597_38	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0199597_39	PHROG	phrog_10	major head protein	head and packaging
UHGV-0199597_39	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0199597_39	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0199597_39	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0199597_39	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0199597_39	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0199597_39	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0199597_40	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0199597_40	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0199597_41	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0199597_41	UniRef90	UniRef90_A0A417HAG8	Minor capsid protein	NA
UHGV-0199597_41	eggNOG-mapper	545697.HMPREF0216_02846	Phage minor capsid protein 2	NA
UHGV-0199597_41	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0199597_41	COG	COG2369	NA	NA
UHGV-0199597_41	Structural annotation	PF06152	NA	NA
UHGV-0199597_42	PHROG	phrog_533	portal protein	head and packaging
UHGV-0199597_42	UniRef90	UniRef90_A0A2U1BEK0	A118 family predicted phage portal protein	NA
UHGV-0199597_42	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0199597_42	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0199597_42	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0199597_43	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0199597_43	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0199597_43	UniRef90	UniRef90_A0A6L8SYJ6	PBSX family phage terminase large subunit	NA
UHGV-0199597_43	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0199597_43	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0199597_43	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0199597_43	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0199597_43	COG	COG1783	Phage terminase large subunit	NA
UHGV-0199597_43	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0199597_44	PHROG	phrog_9479	NA	unknown function
UHGV-0199597_44	eggNOG-mapper	1514668.JOOA01000002_gene2680	NA	NA
UHGV-0199597_44	Structural annotation	PF15529	NA	NA
UHGV-0199597_46	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0199597_46	UniRef90	UniRef90_R5YPA6	ParB-like protein	NA
UHGV-0199597_46	eggNOG-mapper	936154.STP_1604	NA	NA
UHGV-0199597_46	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0199597_46	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0199597_46	Pfam	PF14386	NA	DUF4417
UHGV-0199597_46	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0199597_46	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-0199597_47	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0199597_47	UniRef90	UniRef90_UPI001D0837DD	NA	NA
UHGV-0199597_47	eggNOG-mapper	1033744.CAEL01000029_gene1288	NA	NA
UHGV-0199597_47	Pfam	PF07374	NA	DUF1492
UHGV-0199597_47	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0199597_49	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0199597_49	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0199597_49	UniRef90	UniRef90_UPI001873736C	dUTP diphosphatase	NA
UHGV-0199597_49	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-0199597_49	Pfam	PF00692	dUTPase	dUTPase
UHGV-0199597_49	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0199597_49	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0199597_49	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0199597_51	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0199597_51	UniRef90	UniRef90_A0A316LD95	Sigma70_r2 domain-containing protein	NA
UHGV-0199597_51	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0199597_51	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0199597_51	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0199597_51	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0199597_51	Structural annotation	PF00196, MF_00959, NF006158, COG1191	NA	NA
UHGV-0199597_55	PHROG	phrog_22543	NA	unknown function
UHGV-0199597_56	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0199597_58	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0199597_58	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0199597_58	UniRef90	UniRef90_A0A7C6PBU4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0199597_58	eggNOG-mapper	702450.CUW_0526	Endodeoxyribonuclease RusA	NA
UHGV-0199597_58	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0199597_58	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0199597_58	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0199597_59	PHROG	phrog_7566	NA	unknown function
UHGV-0199597_59	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0199597_60	KOfam	K24451	zim; modification methylase	NA
UHGV-0199597_60	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0199597_60	UniRef90	UniRef90_A0A7G9WJV4	Methyltransferase	NA
UHGV-0199597_60	eggNOG-mapper	1280692.AUJL01000044_gene2345	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0199597_60	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-0199597_60	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0199597_60	COG	COG0863	DNA modification methylase	NA
UHGV-0199597_60	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0199597_61	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0199597_61	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0199597_61	UniRef90	UniRef90_UPI00189BC49F	DEAD/DEAH box helicase	NA
UHGV-0199597_61	eggNOG-mapper	394503.Ccel_3060	SNF2 family N-terminal domain	NA
UHGV-0199597_61	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0199597_61	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0199597_61	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0199597_61	Structural annotation	PF18766, PF16203, MF_01821, TIGR04095, COG0553	NA	NA
UHGV-0199597_62	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0199597_62	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-0199597_62	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0199597_62	Structural annotation	PF05772	NA	NA
UHGV-0199597_63	PHROG	phrog_9804	NA	unknown function
UHGV-0199597_63	UniRef90	UniRef90_R6LQQ5	Inhibitor_G39P domain-containing protein	NA
UHGV-0199597_63	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0199597_63	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0199597_63	Structural annotation	PF11417	NA	NA
UHGV-0199597_64	PHROG	phrog_15768	NA	unknown function
UHGV-0199597_64	UniRef90	UniRef90_UPI001959E913	NA	NA
UHGV-0199597_64	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0199597_64	AcrCatalog	cluster_38323	NA	NA
UHGV-0199597_64	Pfam	PF19808	NA	DUF6291
UHGV-0199597_64	Structural annotation	PF19808	NA	NA
UHGV-0199597_65	PHROG	phrog_4973	NA	unknown function
UHGV-0199597_65	UniRef90	UniRef90_A0A3D3Y0P8	DNA-binding protein	NA
UHGV-0199597_65	eggNOG-mapper	935261.JAGL01000009_gene1175	Helix-turn-helix domain	NA
UHGV-0199597_65	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0199597_65	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0199597_66	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0199597_66	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0199597_66	UniRef90	UniRef90_A0A2N2CV85	Single-stranded DNA-binding protein	NA
UHGV-0199597_66	eggNOG-mapper	693746.OBV_19910	Single-strand binding protein family	NA
UHGV-0199597_66	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0199597_66	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0199597_66	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0199597_66	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0199597_66	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0199597_67	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0199597_67	UniRef90	UniRef90_UPI0018AC33A4	ERF family protein	NA
UHGV-0199597_67	eggNOG-mapper	1497679.EP56_08440	ERF superfamily	NA
UHGV-0199597_67	Pfam	PF04404	ERF superfamily	ERF
UHGV-0199597_67	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0199597_68	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0199597_68	UniRef90	UniRef90_A0A1C5N4H2	Siphovirus Gp157	NA
UHGV-0199597_68	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0199597_68	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0199597_68	Structural annotation	PF05565	NA	NA
UHGV-0199597_70	PHROG	phrog_27197	NA	unknown function
UHGV-0199597_70	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0199597_70	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0199597_70	Structural annotation	NF007410	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0199597	Yes	41,156 bps	51.62%	100.00%	0.9809
UHGV-0128103	No	41,238 bps	51.66%	97.77%	0.9809
UHGV-1334681	No	41,187 bps	51.63%	97.65%	0.9807
UHGV-0618398	No	40,771 bps	51.75%	96.64%	0.9816
UHGV-0083309	No	40,401 bps	51.60%	95.79%	0.9814
UHGV-1390489	No	40,401 bps	51.60%	95.79%	0.9814
UHGV-1412976	No	34,801 bps	52.01%	82.50%	0.9817
UHGV-1466908	No	34,699 bps	52.01%	82.27%	0.9819
UHGV-0052126	No	30,183 bps	51.76%	71.55%	0.9820
UHGV-1693649	No	17,433 bps	51.19%	41.31%	0.9813