vOTU-047497

Overview

vOTU representative UHGV-0200666

No. of genomes 9

Genome length 35,302 bps

Completeness 100.00% (complete)

Host Lachnospiraceae

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-047497
Number of genomes	9
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00022 › vSUBFAM-00342 › vGENUS-06885 › vSUBGEN-45794 › vOTU-047497
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Lachnospirales › Lachnospiraceae
Host range breadth	Family
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0200666
BioSample	NA
Genome length	35,302 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	56
CDS density	90.50%
tRNA count	1
Integrase	Yes
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0200666_1	PHROG	phrog_1066	NA	unknown function
UHGV-0200666_1	eggNOG-mapper	397290.C810_00417	NA	NA
UHGV-0200666_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0200666_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0200666_2	UniRef90	UniRef90_A0A7C9KZF1	Terminase large subunit	NA
UHGV-0200666_2	eggNOG-mapper	411470.RUMGNA_02062	NA	NA
UHGV-0200666_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0200666_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0200666_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0200666_2	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0200666_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0200666_3	UniRef90	UniRef90_A0A7C9LEF5	Phage portal protein	NA
UHGV-0200666_3	eggNOG-mapper	397290.C810_00419	Phage portal protein	NA
UHGV-0200666_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0200666_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0200666_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0200666_4	KOfam	K06904	NA	NA
UHGV-0200666_4	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0200666_4	UniRef90	UniRef90_A0A7C9L2H1	HK97 family phage prohead protease	NA
UHGV-0200666_4	eggNOG-mapper	411470.RUMGNA_02064	Caudovirus prohead serine protease	NA
UHGV-0200666_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0200666_4	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0200666_4	COG	COG3740	Phage head maturation protease	NA
UHGV-0200666_4	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0200666_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0200666_5	UniRef90	UniRef90_C9LCN3	Phage major capsid protein, HK97 family	NA
UHGV-0200666_5	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-0200666_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0200666_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0200666_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0200666_5	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0200666_6	Pfam	PF02037	SAP domain	SAP
UHGV-0200666_6	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0200666_6	Structural annotation	PF14000	NA	NA
UHGV-0200666_7	PHROG	phrog_5223	neck protein	connector
UHGV-0200666_7	UniRef90	UniRef90_A0A3B9G3U3	DNA-packaging protein	NA
UHGV-0200666_7	eggNOG-mapper	290402.Cbei_0910	NA	NA
UHGV-0200666_7	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0200666_8	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0200666_8	UniRef90	UniRef90_UPI00189EBA11	phage head closure protein	NA
UHGV-0200666_8	eggNOG-mapper	198094.BA_0471	head-tail adaptor	NA
UHGV-0200666_8	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0200666_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0200666_9	UniRef90	UniRef90_A0A7C9LD40	HK97 gp10 family phage protein	NA
UHGV-0200666_9	eggNOG-mapper	411471.SUBVAR_05855	NA	NA
UHGV-0200666_9	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0200666_9	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0200666_10	eggNOG-mapper	411468.CLOSCI_00544	NA	NA
UHGV-0200666_10	Structural annotation	PF20765	NA	NA
UHGV-0200666_11	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0200666_11	eggNOG-mapper	411902.CLOBOL_03874	NA	NA
UHGV-0200666_11	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0200666_12	PHROG	phrog_29863	NA	unknown function
UHGV-0200666_12	eggNOG-mapper	411468.CLOSCI_00542	NA	NA
UHGV-0200666_12	Structural annotation	PF17388	NA	NA
UHGV-0200666_13	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0200666_13	UniRef90	UniRef90_A0A1M6MWG7	Phage-related minor tail protein	NA
UHGV-0200666_13	eggNOG-mapper	908340.HMPREF9406_2570	Phage tail tape measure protein TP901	NA
UHGV-0200666_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0200666_13	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0200666_13	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0200666_14	PHROG	phrog_36410	NA	unknown function
UHGV-0200666_14	UniRef90	UniRef90_B0NAS0	Putative phage tail component domain protein	NA
UHGV-0200666_14	eggNOG-mapper	411468.CLOSCI_00539	COG NOG18823 non supervised orthologous group	NA
UHGV-0200666_14	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0200666_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0200666_14	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0200666_15	PHROG	phrog_538	minor tail protein	tail
UHGV-0200666_15	UniRef90	UniRef90_A0A174XET9	Phage-like protein	NA
UHGV-0200666_15	eggNOG-mapper	411468.CLOSCI_00538	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0200666_15	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0200666_15	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0200666_16	PHROG	phrog_1220	head protein	head and packaging
UHGV-0200666_16	UniRef90	UniRef90_A0A174XIV6	Phage structural protein	NA
UHGV-0200666_16	eggNOG-mapper	411468.CLOSCI_00537	COG NOG18825 non supervised orthologous group	NA
UHGV-0200666_16	Structural annotation	PF20747	NA	NA
UHGV-0200666_17	UniRef90	UniRef90_R7HJQ7	Leucine-rich repeat (LRR) protein	NA
UHGV-0200666_17	eggNOG-mapper	1680.BADO_1520	Cysteine-rich secretory protein family	NA
UHGV-0200666_17	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0200666_17	NCBIFam	TIGR02543.1	TIGR02543 family repeat protein	NA
UHGV-0200666_17	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0200666_18	eggNOG-mapper	657322.FPR_22010	NA	NA
UHGV-0200666_19	PHROG	phrog_19280	NA	unknown function
UHGV-0200666_19	UniRef90	UniRef90_A0A416HFD1	NA	NA
UHGV-0200666_19	eggNOG-mapper	1235797.C816_02837	NA	NA
UHGV-0200666_19	Pfam	PF19789	NA	DUF6273
UHGV-0200666_19	Structural annotation	PF19789	NA	NA
UHGV-0200666_20	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0200666_20	UniRef90	UniRef90_UPI00189E384C	four helix bundle protein	NA
UHGV-0200666_20	eggNOG-mapper	525254.HMPREF0072_1280	NA	NA
UHGV-0200666_20	Pfam	PF05635	23S rRNA-intervening sequence protein	23S_rRNA_IVP
UHGV-0200666_20	Structural annotation	PF05635, NF008911	NA	NA
UHGV-0200666_21	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0200666_21	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0200666_21	UniRef90	UniRef90_A0A412ELW9	Reverse transcriptase domain-containing protein	NA
UHGV-0200666_21	eggNOG-mapper	1160721.RBI_I01568	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0200666_21	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0200666_21	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0200666_21	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0200666_21	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0200666_23	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0200666_24	PHROG	phrog_199	holin	lysis
UHGV-0200666_24	UniRef90	UniRef90_A0A7C9KZL1	Holin	NA
UHGV-0200666_24	eggNOG-mapper	97139.C824_03357	TIGRFAM toxin secretion phage lysis holin	NA
UHGV-0200666_24	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0200666_24	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0200666_24	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0200666_24	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0200666_25	KOfam	K07273	acm; lysozyme	NA
UHGV-0200666_25	PHROG	phrog_291	endolysin	lysis
UHGV-0200666_25	UniRef90	UniRef90_A0A374JNX4	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0200666_25	eggNOG-mapper	521003.COLINT_02363	CW_7 repeat	NA
UHGV-0200666_25	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0200666_25	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0200666_25	Pfam	PF01476	LysM domain	LysM
UHGV-0200666_25	COG	COG1388	LysM repeat	NA
UHGV-0200666_25	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0200666_27	KOfam	K14059	int; integrase	NA
UHGV-0200666_27	PHROG	phrog_1	integrase	integration and excision
UHGV-0200666_27	UniRef90	UniRef90_A0A7C9H3C8	Tyrosine-type recombinase/integrase	NA
UHGV-0200666_27	eggNOG-mapper	1235792.C808_01553	Phage integrase family	NA
UHGV-0200666_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0200666_27	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0200666_27	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0200666_28	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0200666_28	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0200666_28	UniRef90	UniRef90_A0A7C9H3W9	Helix-turn-helix domain-containing protein	NA
UHGV-0200666_28	eggNOG-mapper	742741.HMPREF9475_00399	Helix-turn-helix XRE-family like proteins	NA
UHGV-0200666_28	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0200666_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0200666_28	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0200666_30	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0200666_30	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0200666_30	UniRef90	UniRef90_A0A7C9H8R9	Helix-turn-helix domain-containing protein	NA
UHGV-0200666_30	eggNOG-mapper	641107.CDLVIII_1309	Helix-turn-helix XRE-family like proteins	NA
UHGV-0200666_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0200666_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0200666_30	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0200666_31	KOfam	K17398	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	NA
UHGV-0200666_31	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0200666_31	UniRef90	UniRef90_A0A3R5W030	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0200666_31	eggNOG-mapper	1341157.RF007C_03290	C-5 cytosine-specific DNA methylase	NA
UHGV-0200666_31	PADLOC	oMTase_00016	orphan methyltransferase	RM
UHGV-0200666_31	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0200666_31	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0200666_31	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0200666_31	Structural annotation	PF00145, MF_02126, TIGR00675, COG0270	NA	NA
UHGV-0200666_35	eggNOG-mapper	411470.RUMGNA_02035	NA	NA
UHGV-0200666_40	eggNOG-mapper	411470.RUMGNA_02040	NA	NA
UHGV-0200666_41	PHROG	phrog_6058	NA	unknown function
UHGV-0200666_41	UniRef90	UniRef90_A0A6B9SRW8	Putative Xis protein	NA
UHGV-0200666_41	eggNOG-mapper	1238184.CM001792_gene70	NA	NA
UHGV-0200666_41	Structural annotation	PF12728, NF033787	NA	NA
UHGV-0200666_42	PHROG	phrog_20014	NA	unknown function
UHGV-0200666_42	eggNOG-mapper	411470.RUMGNA_02042	NA	NA
UHGV-0200666_43	PHROG	phrog_26861	NA	unknown function
UHGV-0200666_43	UniRef90	UniRef90_A0A3D2D5L8	Single-stranded DNA-binding protein	NA
UHGV-0200666_43	eggNOG-mapper	397287.C807_01309	Single-strand binding protein family	NA
UHGV-0200666_43	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0200666_43	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0200666_43	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0200666_44	UniRef90	UniRef90_A0A3R7C723	NA	NA
UHGV-0200666_44	Pfam	PF19789	NA	DUF6273
UHGV-0200666_44	Structural annotation	PF19789	NA	NA
UHGV-0200666_45	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0200666_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0200666_45	UniRef90	UniRef90_A0A3R6JT51	XRE family transcriptional regulator	NA
UHGV-0200666_45	eggNOG-mapper	658088.HMPREF0987_01150	Helix-turn-helix XRE-family like proteins	NA
UHGV-0200666_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0200666_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0200666_45	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0200666_47	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0200666_47	eggNOG-mapper	397290.C810_00404	NA	NA
UHGV-0200666_47	Structural annotation	PF21578	NA	NA
UHGV-0200666_48	PHROG	phrog_824	NA	unknown function
UHGV-0200666_48	UniRef90	UniRef90_A0A7C9H491	VRR-NUC domain-containing protein	NA
UHGV-0200666_48	eggNOG-mapper	411470.RUMGNA_02049	VRR-NUC domain	NA
UHGV-0200666_48	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0200666_48	Structural annotation	PF08774	NA	NA
UHGV-0200666_50	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0200666_50	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0200666_50	UniRef90	UniRef90_A0A7C9H418	AAA family ATPase	NA
UHGV-0200666_50	eggNOG-mapper	397288.C806_00082	AAA domain	NA
UHGV-0200666_50	Pfam	PF13614	AAA domain	AAA_31
UHGV-0200666_50	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0200666_50	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0200666_51	PHROG	phrog_15982	NA	unknown function
UHGV-0200666_51	UniRef90	UniRef90_N9XAA8	ParB domain-containing protein	NA
UHGV-0200666_51	eggNOG-mapper	411470.RUMGNA_02052	NA	NA
UHGV-0200666_51	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0200666_51	Pfam	PF12961	NA	DUF3850
UHGV-0200666_51	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0200666_51	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0200666_54	UniRef90	UniRef90_A0A396NNM4	DNA-binding protein	NA
UHGV-0200666_54	eggNOG-mapper	411470.RUMGNA_02055	NA	NA
UHGV-0200666_55	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0200666_55	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0200666_55	UniRef90	UniRef90_UPI001C0B75F0	single-stranded DNA-binding protein	NA
UHGV-0200666_55	eggNOG-mapper	411470.RUMGNA_02057	Single-strand binding protein family	NA
UHGV-0200666_55	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0200666_55	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0200666_55	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0200666_55	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0200666_55	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0200666	Yes	35,302 bps	43.41%	100.00%	0.9808
UHGV-0032692	No	35,601 bps	43.50%	99.90%	0.9797
UHGV-0177174	No	35,413 bps	43.42%	99.90%	0.9808
UHGV-1537037	No	32,410 bps	43.42%	95.15%	0.9814
UHGV-1389117	No	31,703 bps	43.60%	93.11%	0.9800
UHGV-0182909	No	30,599 bps	43.71%	89.99%	0.9807
UHGV-0009175	No	30,562 bps	43.87%	89.90%	0.9811
UHGV-1332612	No	26,206 bps	43.70%	76.65%	0.9821
UHGV-1521147	No	20,098 bps	43.48%	58.92%	0.9812