vOTU-047498

Overview

vOTU representative UHGV-0200675

No. of genomes 9

Genome length 34,825 bps

Completeness 100.00% (complete)

Host CAG-103

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-047498
Number of genomes	9
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00040 › vSUBFAM-00658 › vGENUS-00533 › vSUBGEN-45790 › vOTU-047498
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Oscillospiraceae › CAG-103
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0200675
BioSample	SAMN06164788
Genome length	34,825 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	52
CDS density	89.40%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0200675_1	eggNOG-mapper	1378168.N510_01472	NA	NA
UHGV-0200675_2	PHROG	phrog_15863	NA	unknown function
UHGV-0200675_2	UniRef90	UniRef90_K1RTM4	DnaJ domain protein	NA
UHGV-0200675_2	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-0200675_2	Pfam	PF00226	DnaJ domain	DnaJ
UHGV-0200675_2	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0200675_3	Structural annotation	PF17917	NA	NA
UHGV-0200675_4	KOfam	K14059	int; integrase	NA
UHGV-0200675_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0200675_4	UniRef90	UniRef90_A0A2Z4QB94	Tyr recombinase domain-containing protein	NA
UHGV-0200675_4	eggNOG-mapper	411468.CLOSCI_00325	Belongs to the 'phage' integrase family	NA
UHGV-0200675_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0200675_4	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0200675_4	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0200675_6	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0200675_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0200675_6	UniRef90	UniRef90_UPI001899F946	helix-turn-helix domain-containing protein	NA
UHGV-0200675_6	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0200675_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0200675_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0200675_6	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0200675_12	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0200675_13	PHROG	phrog_4433	NA	unknown function
UHGV-0200675_13	UniRef90	UniRef90_A0A6M5C839	Putative ADP-ribosyltransferase	NA
UHGV-0200675_13	eggNOG-mapper	645991.Sgly_0315	regulation of DNA-templated transcription, elongation	NA
UHGV-0200675_13	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0200675_18	PHROG	phrog_14970	NA	unknown function
UHGV-0200675_18	UniRef90	UniRef90_A0A3P6JH63	Essential recombination function protein	NA
UHGV-0200675_18	eggNOG-mapper	411470.RUMGNA_02193	double-strand break repair protein	NA
UHGV-0200675_18	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0200675_18	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0200675_18	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0200675_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0200675_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0200675_19	UniRef90	UniRef90_A0A4Z0CEI8	Single-stranded DNA-binding protein	NA
UHGV-0200675_19	eggNOG-mapper	1074488.AGBX01000001_gene892	Single-strand binding protein family	NA
UHGV-0200675_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0200675_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0200675_19	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0200675_20	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0200675_20	UniRef90	UniRef90_UPI001A8FB48D	replisome organizer	NA
UHGV-0200675_20	eggNOG-mapper	1139219.I569_00860	DnaD domain protein	NA
UHGV-0200675_20	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0200675_20	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0200675_21	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0200675_21	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0200675_21	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0200675_23	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0200675_23	UniRef90	UniRef90_UPI001A9B5584	DNA cytosine methyltransferase	NA
UHGV-0200675_23	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0200675_23	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0200675_23	Structural annotation	PF04445, MF_00341, TIGR00537, COG0270	NA	NA
UHGV-0200675_26	PHROG	phrog_3136	NA	unknown function
UHGV-0200675_26	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-0200675_26	eggNOG-mapper	394503.Ccel_3165	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0200675_26	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0200675_26	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0200675_29	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0200675_31	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0200675_31	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0200675_31	eggNOG-mapper	521098.Aaci_1081	sigma factor activity	NA
UHGV-0200675_31	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0200675_31	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0200675_31	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0200675_31	Structural annotation	PF04542, MF_00961, TIGR02835, COG1191	NA	NA
UHGV-0200675_33	PHROG	phrog_474	phosphofructokinase	other
UHGV-0200675_33	UniRef90	UniRef90_K1TIM3	NA	NA
UHGV-0200675_33	eggNOG-mapper	1203606.HMPREF1526_00237	NA	NA
UHGV-0200675_33	Pfam	PF19905	NA	DUF6378
UHGV-0200675_33	Structural annotation	PF19905	NA	NA
UHGV-0200675_34	UniRef90	UniRef90_A0A2U1CD16	PBECR3 domain-containing protein	NA
UHGV-0200675_34	eggNOG-mapper	1519439.JPJG01000011_gene53	NA	NA
UHGV-0200675_35	eggNOG-mapper	693746.OBV_01600	NA	NA
UHGV-0200675_37	PHROG	phrog_962	holin	lysis
UHGV-0200675_37	UniRef90	UniRef90_A0A1C6F224	Small integral membrane protein	NA
UHGV-0200675_37	eggNOG-mapper	553973.CLOHYLEM_04415	Bacteriophage holin	NA
UHGV-0200675_37	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0200675_37	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0200675_37	COG	COG5546	NA	NA
UHGV-0200675_37	Structural annotation	COG5546	NA	NA
UHGV-0200675_38	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0200675_38	PHROG	phrog_1794	amidase	lysis
UHGV-0200675_38	UniRef90	UniRef90_R5AZE6	N-acetylmuramoyl-L-alanine amidase family 2	NA
UHGV-0200675_38	eggNOG-mapper	1235793.C809_04545	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0200675_38	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0200675_38	Pfam	PF00395	S-layer homology domain	SLH
UHGV-0200675_38	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0200675_38	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0200675_39	PHROG	phrog_32509	NA	unknown function
UHGV-0200675_39	eggNOG-mapper	763034.HMPREF9446_00480	NA	NA
UHGV-0200675_39	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0200675_40	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0200675_41	PHROG	phrog_892	tail fiber protein	tail
UHGV-0200675_41	Structural annotation	PF17577	NA	NA
UHGV-0200675_42	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-0200675_42	eggNOG-mapper	693746.OBV_01680	NA	NA
UHGV-0200675_42	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0200675_43	eggNOG-mapper	1519439.JPJG01000011_gene57	NA	NA
UHGV-0200675_43	Structural annotation	PF11650	NA	NA
UHGV-0200675_44	PHROG	phrog_422	major head protein	head and packaging
UHGV-0200675_44	UniRef90	UniRef90_K1S1E0	Gp7 (Fragment)	NA
UHGV-0200675_44	eggNOG-mapper	693746.OBV_01700	NA	NA
UHGV-0200675_44	Pfam	PF13287	Fn3 associated	Fn3_assoc
UHGV-0200675_44	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0200675_46	PHROG	phrog_156	portal protein	head and packaging
UHGV-0200675_46	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-0200675_46	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0200675_48	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0200675_48	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0200675_48	UniRef90	UniRef90_A0A1M5YHQ5	Phage terminase large subunit	NA
UHGV-0200675_48	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0200675_48	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0200675_48	COG	COG1783	Phage terminase large subunit	NA
UHGV-0200675_48	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0200675_50	PHROG	phrog_7339	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0200675_50	UniRef90	UniRef90_A0A8F2F0X6	Metallophosphoesterase	NA
UHGV-0200675_50	eggNOG-mapper	443254.Marpi_0340	metallophosphoesterase	NA
UHGV-0200675_50	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0200675_50	COG	COG1408	Predicted phosphohydrolase, MPP superfamily	NA
UHGV-0200675_50	Structural annotation	PF12850, MF_00325, NF003118, COG1311	NA	NA
UHGV-0200675_52	Structural annotation	PF16677	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0200675	Yes	34,825 bps	58.17%	100.00%	0.9795
UHGV-0165100	No	36,601 bps	58.22%	99.14%	0.9802
UHGV-1485666	No	36,601 bps	58.22%	99.14%	0.9802
UHGV-1442223	No	18,984 bps	57.60%	51.42%	0.9800
UHGV-0374029	No	18,818 bps	57.50%	50.97%	0.9774
UHGV-0168910	No	17,633 bps	58.60%	47.76%	0.9806
UHGV-1735869	No	17,633 bps	58.60%	47.76%	0.9806
UHGV-1769577	No	15,330 bps	57.81%	41.52%	0.9745
UHGV-0283304	No	13,527 bps	58.76%	36.64%	0.9799