vOTU-047500

Overview

vOTU representative UHGV-0200728

No. of genomes 5

Genome length 38,781 bps

Completeness 100.00% (complete)

Host Erysipelatoclostridium ramosum

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-047500
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 › vSUBFAM-01317 › vGENUS-01472 › vSUBGEN-30281 › vOTU-047500
Host taxonomy	Bacteria › Firmicutes › Bacilli › Erysipelotrichales › Coprobacillaceae › Erysipelatoclostridium › Erysipelatoclostridium ramosum
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0200728
BioSample	SAMN05826793
Genome length	38,781 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	68
CDS density	89.61%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0200728_1	PHROG	phrog_12	portal protein	head and packaging
UHGV-0200728_1	UniRef90	UniRef90_A0A3E3AEZ3	Phage portal protein	NA
UHGV-0200728_1	eggNOG-mapper	1232446.BAIE02000002_gene824	Phage portal protein, HK97 family	NA
UHGV-0200728_1	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0200728_1	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0200728_1	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0200728_1	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0200728_2	KOfam	K06904	NA	NA
UHGV-0200728_2	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0200728_2	UniRef90	UniRef90_A0A3E3AEE5	HK97 family phage prohead protease	NA
UHGV-0200728_2	eggNOG-mapper	1232446.BAIE02000002_gene825	Phage prohead protease, HK97 family	NA
UHGV-0200728_2	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0200728_2	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0200728_2	COG	COG3740	Phage head maturation protease	NA
UHGV-0200728_2	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0200728_3	PHROG	phrog_10	major head protein	head and packaging
UHGV-0200728_3	UniRef90	UniRef90_A0A3E3ACQ3	Phage major capsid protein	NA
UHGV-0200728_3	eggNOG-mapper	1232446.BAIE02000002_gene826	phage major capsid protein, HK97 family	NA
UHGV-0200728_3	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0200728_3	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0200728_3	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0200728_3	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0200728_4	PHROG	phrog_2550	NA	unknown function
UHGV-0200728_4	UniRef90	UniRef90_R5V091	Phage related protein	NA
UHGV-0200728_4	eggNOG-mapper	1232446.BAIE02000002_gene827	NA	NA
UHGV-0200728_4	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0200728_4	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0200728_5	PHROG	phrog_19734	NA	unknown function
UHGV-0200728_5	UniRef90	UniRef90_A0A3E3ACV2	Head-tail adaptor protein	NA
UHGV-0200728_5	eggNOG-mapper	1232446.BAIE02000002_gene828	NA	NA
UHGV-0200728_5	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0200728_6	PHROG	phrog_78	tail terminator	connector
UHGV-0200728_6	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-0200728_6	Structural annotation	PF05657	NA	NA
UHGV-0200728_7	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0200728_7	eggNOG-mapper	1232446.BAIE02000002_gene830	NA	NA
UHGV-0200728_7	Structural annotation	TIGR01725	NA	NA
UHGV-0200728_8	PHROG	phrog_88	major tail protein	tail
UHGV-0200728_8	UniRef90	UniRef90_A0A3E3ACS6	Phage tail protein	NA
UHGV-0200728_8	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0200728_8	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0200728_9	eggNOG-mapper	1235798.C817_04591	NA	NA
UHGV-0200728_11	PHROG	phrog_23464	NA	unknown function
UHGV-0200728_11	eggNOG-mapper	1232446.BAIE02000002_gene834	tape measure	NA
UHGV-0200728_11	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0200728_11	Structural annotation	PF20155	NA	NA
UHGV-0200728_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0200728_12	UniRef90	UniRef90_A0A3E3AF06	Phage tail protein	NA
UHGV-0200728_12	eggNOG-mapper	1232446.BAIE02000002_gene835	phage tail	NA
UHGV-0200728_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-0200728_12	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0200728_13	PHROG	phrog_13289	tail protein	tail
UHGV-0200728_13	UniRef90	UniRef90_A0A3E3AEF9	Peptidase S74 domain-containing protein	NA
UHGV-0200728_13	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-0200728_13	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0200728_13	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0200728_13	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0200728_13	COG	COG4926	Phage-related protein	NA
UHGV-0200728_13	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0200728_14	eggNOG-mapper	999413.HMPREF1094_01998	NA	NA
UHGV-0200728_15	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0200728_15	PHROG	phrog_11157	NA	unknown function
UHGV-0200728_15	UniRef90	UniRef90_A0A1Y4N8R1	Big_13 domain-containing protein	NA
UHGV-0200728_15	eggNOG-mapper	1232446.BAIE02000002_gene839	NA	NA
UHGV-0200728_15	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0200728_15	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0200728_15	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0200728_15	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0200728_16	PHROG	phrog_32322	NA	unknown function
UHGV-0200728_16	UniRef90	UniRef90_A0A7U9CLF4	Ig-like_bact domain-containing protein	NA
UHGV-0200728_16	eggNOG-mapper	1232446.BAIE02000002_gene840	NA	NA
UHGV-0200728_16	Pfam	PF13754	NA	Big_3_4
UHGV-0200728_16	Structural annotation	PF13754	NA	NA
UHGV-0200728_17	Structural annotation	PF07703, TIGR02657, COG2372	NA	NA
UHGV-0200728_21	PHROG	phrog_1129	holin	lysis
UHGV-0200728_21	UniRef90	UniRef90_A0A0J8Z1S7	Holin protein	NA
UHGV-0200728_21	eggNOG-mapper	1123075.AUDP01000020_gene1532	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0200728_21	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0200728_21	Structural annotation	PF06946	NA	NA
UHGV-0200728_22	PHROG	phrog_4105	NA	unknown function
UHGV-0200728_22	eggNOG-mapper	1121105.ATXL01000027_gene760	NA	NA
UHGV-0200728_23	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0200728_23	PHROG	phrog_3088	amidase	lysis
UHGV-0200728_23	UniRef90	UniRef90_UPI001C253586	SH3 domain-containing protein	NA
UHGV-0200728_23	eggNOG-mapper	1232446.BAIE02000094_gene1162	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0200728_23	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0200728_23	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0200728_23	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0200728_23	Structural annotation	PF01510, PF18342, MF_04111, NF008758, NF040670, COG5632	NA	NA
UHGV-0200728_26	eggNOG-mapper	1232446.BAIE02000003_gene848	NA	NA
UHGV-0200728_28	KOfam	K07217	K07217; Mn-containing catalase	NA
UHGV-0200728_28	PHROG	phrog_7573	NA	unknown function
UHGV-0200728_28	UniRef90	UniRef90_UPI0004978D44	manganese catalase family protein	NA
UHGV-0200728_28	eggNOG-mapper	1232446.BAIE02000003_gene849	PFAM Manganese containing catalase	NA
UHGV-0200728_28	Pfam	PF05067	Manganese containing catalase	Mn_catalase
UHGV-0200728_28	COG	COG3546	Mn-containing catalase (includes spore coat protein CotJC)	NA
UHGV-0200728_30	KOfam	K05337	fer; ferredoxin	NA
UHGV-0200728_30	UniRef90	UniRef90_UPI001C3859D8	ferredoxin	NA
UHGV-0200728_30	eggNOG-mapper	1232446.BAIE02000003_gene851	electron transfer activity	NA
UHGV-0200728_30	Pfam	PF13370	4Fe-4S single cluster domain of Ferredoxin I	Fer4_13
UHGV-0200728_30	COG	COG1141	Ferredoxin	NA
UHGV-0200728_32	PHROG	phrog_17771	NA	unknown function
UHGV-0200728_32	eggNOG-mapper	1232446.BAIE02000002_gene791	NA	NA
UHGV-0200728_33	PHROG	phrog_5059	NA	unknown function
UHGV-0200728_33	UniRef90	UniRef90_UPI0004965481	NA	NA
UHGV-0200728_33	eggNOG-mapper	1232446.BAIE02000002_gene792	NA	NA
UHGV-0200728_33	Pfam	PF08861	NA	DUF1828
UHGV-0200728_33	Pfam	PF08862	NA	DUF1829
UHGV-0200728_33	Structural annotation	PF08862, PF08861, MF_00722, COG3372	NA	NA
UHGV-0200728_34	KOfam	K14059	int; integrase	NA
UHGV-0200728_34	PHROG	phrog_1	integrase	integration and excision
UHGV-0200728_34	UniRef90	UniRef90_UPI000E46F6FE	site-specific integrase	NA
UHGV-0200728_34	eggNOG-mapper	1232446.BAIE02000002_gene793	Phage integrase family	NA
UHGV-0200728_34	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0200728_34	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0200728_34	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0200728_34	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0200728_34	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0200728_36	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0200728_36	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0200728_36	UniRef90	UniRef90_UPI00049768D8	LexA family transcriptional regulator	NA
UHGV-0200728_36	eggNOG-mapper	1232446.BAIE02000002_gene795	NA	NA
UHGV-0200728_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0200728_36	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0200728_36	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0200728_36	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-0200728_37	UniRef90	UniRef90_UPI000497CE34	helix-turn-helix transcriptional regulator	NA
UHGV-0200728_37	eggNOG-mapper	1232446.BAIE02000002_gene796	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0200728_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0200728_37	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0200728_39	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0200728_39	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0200728_39	UniRef90	UniRef90_UPI0018A922A1	ORF6C domain-containing protein	NA
UHGV-0200728_39	eggNOG-mapper	1232446.BAIE02000002_gene798	ORF6C domain	NA
UHGV-0200728_39	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0200728_39	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0200728_39	COG	COG3617	Prophage antirepressor	NA
UHGV-0200728_39	Structural annotation	PF02498, PF10552, TIGR02681, COG3617	NA	NA
UHGV-0200728_41	UniRef90	UniRef90_A0A3E3ACS2	DNA-binding protein	NA
UHGV-0200728_44	PHROG	phrog_7445	NA	unknown function
UHGV-0200728_44	UniRef90	UniRef90_UPI00189C8A62	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0200728_44	eggNOG-mapper	1268240.ATFI01000007_gene436	PcfK-like protein	NA
UHGV-0200728_44	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0200728_44	Structural annotation	PF14058	NA	NA
UHGV-0200728_45	PHROG	phrog_8470	NA	unknown function
UHGV-0200728_45	UniRef90	UniRef90_UPI000495B0A2	PcfJ domain-containing protein	NA
UHGV-0200728_45	eggNOG-mapper	1232446.BAIE02000002_gene802	PcfJ-like protein	NA
UHGV-0200728_45	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0200728_45	Structural annotation	PF14284, NF008072	NA	NA
UHGV-0200728_48	PHROG	phrog_3634	NA	unknown function
UHGV-0200728_48	UniRef90	UniRef90_A0A3E3AEX0	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0200728_48	eggNOG-mapper	1232446.BAIE02000002_gene804	nucleoside 2-deoxyribosyltransferase	NA
UHGV-0200728_48	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0200728_48	Structural annotation	PF13676, MF_03036, TIGR03646, COG4916	NA	NA
UHGV-0200728_49	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0200728_49	PHROG	phrog_216	integrase	integration and excision
UHGV-0200728_49	UniRef90	UniRef90_G9R0Z2	Tyr recombinase domain-containing protein	NA
UHGV-0200728_49	eggNOG-mapper	1232446.BAIE02000002_gene805	Integrase	NA
UHGV-0200728_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0200728_49	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0200728_49	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0200728_52	eggNOG-mapper	1235799.C818_00262	NA	NA
UHGV-0200728_56	eggNOG-mapper	1232446.BAIE02000002_gene811	NA	NA
UHGV-0200728_58	UniRef90	UniRef90_A0A7U9CJ41	Phosphagen kinase N-terminal domain-containing protein	NA
UHGV-0200728_60	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0200728_60	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0200728_60	eggNOG-mapper	1232446.BAIE02000002_gene815	NA	NA
UHGV-0200728_60	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0200728_61	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0200728_61	UniRef90	UniRef90_UPI000497F8A6	helix-turn-helix domain-containing protein	NA
UHGV-0200728_61	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0200728_61	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0200728_61	Structural annotation	PF01978, MF_01909, TIGR04176, COG3355	NA	NA
UHGV-0200728_62	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0200728_62	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0200728_62	UniRef90	UniRef90_G9R103	SF4 helicase domain-containing protein	NA
UHGV-0200728_62	eggNOG-mapper	1232446.BAIE02000002_gene817	Participates in initiation and elongation during chromosome replication	NA
UHGV-0200728_62	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0200728_62	COG	COG0305	Replicative DNA helicase	NA
UHGV-0200728_62	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0200728_64	Structural annotation	PF04545, PF01920, TIGR01636	NA	NA
UHGV-0200728_65	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0200728_65	UniRef90	UniRef90_A0A3E3ADS4	HNH endonuclease	NA
UHGV-0200728_65	eggNOG-mapper	1232446.BAIE02000002_gene820	HNH nucleases	NA
UHGV-0200728_65	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0200728_67	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0200728_67	UniRef90	UniRef90_A0A3E3ADK1	Terminase	NA
UHGV-0200728_67	eggNOG-mapper	1232446.BAIE02000002_gene822	Phage terminase, small subunit	NA
UHGV-0200728_67	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0200728_67	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0200728_68	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0200728_68	UniRef90	UniRef90_A0A3E3ADF9	Terminase large subunit	NA
UHGV-0200728_68	eggNOG-mapper	1232446.BAIE02000002_gene823	Phage Terminase	NA
UHGV-0200728_68	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0200728_68	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0200728_68	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0200728_68	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0200728	Yes	38,781 bps	33.50%	100.00%	0.9407
UHGV-0870589	No	38,151 bps	33.57%	99.90%	0.9416
UHGV-1464975	No	22,466 bps	35.93%	62.66%	0.9663
UHGV-0150118	No	13,624 bps	32.55%	37.37%	0.9467
UHGV-1615010	No	10,498 bps	35.29%	30.19%	0.9708