vOTU-047530

Overview

vOTU representative UHGV-0201696

No. of genomes 3

Genome length 31,823 bps

Completeness 100.00% (complete)

Host Collinsella aerofaciens F

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-047530
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00024 › vSUBFAM-07244 › vGENUS-19751 › vSUBGEN-38428 › vOTU-047530
Host taxonomy	Bacteria › Actinobacteriota › Coriobacteriia › Coriobacteriales › Coriobacteriaceae › Collinsella › Collinsella aerofaciens F
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0201696
BioSample	NA
Genome length	31,823 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	47
CDS density	89.35%
tRNA count	2
Integrase	Yes
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0201696_2	PHROG	phrog_10	major head protein	head and packaging
UHGV-0201696_2	UniRef90	UniRef90_UPI000E3C0182	phage major capsid protein	NA
UHGV-0201696_2	eggNOG-mapper	205876.Q855V6_9CAUD	peptidase activity	NA
UHGV-0201696_2	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0201696_2	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0201696_2	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0201696_4	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0201696_4	UniRef90	UniRef90_UPI000985C8EC	Gp19/Gp15/Gp42 family protein	NA
UHGV-0201696_4	Structural annotation	PF09355	NA	NA
UHGV-0201696_6	PHROG	phrog_117	major tail protein	tail
UHGV-0201696_6	UniRef90	UniRef90_UPI000E3BAA7D	phage tail protein	NA
UHGV-0201696_6	eggNOG-mapper	1423775.BAMN01000011_gene598	domain, Protein	NA
UHGV-0201696_6	COG	COG5492	NA	NA
UHGV-0201696_6	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0201696_7	PHROG	phrog_1526	NA	unknown function
UHGV-0201696_9	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0201696_9	UniRef90	UniRef90_A0A8A6QZT4	Phage tail protein	NA
UHGV-0201696_9	eggNOG-mapper	1437608.BBIA_2554	phage tail tape measure protein	NA
UHGV-0201696_9	COG	COG5412	Phage-related protein	NA
UHGV-0201696_10	UniRef90	UniRef90_UPI001EDCD142	phage tail family protein	NA
UHGV-0201696_10	eggNOG-mapper	1111121.HMPREF1247_0012	NA	NA
UHGV-0201696_10	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0201696_11	PHROG	phrog_538	minor tail protein	tail
UHGV-0201696_11	UniRef90	UniRef90_A0A1C5PP83	Phage-related holin (Lysis protein)	NA
UHGV-0201696_11	eggNOG-mapper	78345.BMERY_0868	NA	NA
UHGV-0201696_11	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0201696_13	PHROG	phrog_9994	NA	unknown function
UHGV-0201696_13	eggNOG-mapper	1256908.HMPREF0373_00465	NA	NA
UHGV-0201696_13	Pfam	PF21454	Major structural protein 1, jelly-roll domain	MSP1_barrel
UHGV-0201696_13	Structural annotation	PF21454, PF20747	NA	NA
UHGV-0201696_14	KOfam	K14059	int; integrase	NA
UHGV-0201696_14	PHROG	phrog_1	integrase	integration and excision
UHGV-0201696_14	UniRef90	UniRef90_A0A5K1IJD6	Prophage phiRv2 integrase	NA
UHGV-0201696_14	eggNOG-mapper	445975.COLSTE_01092	Belongs to the 'phage' integrase family	NA
UHGV-0201696_14	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0201696_14	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0201696_14	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0201696_14	Structural annotation	PF00589, PF14659, MF_02055, NF001399, COG4974	NA	NA
UHGV-0201696_16	PHROG	phrog_443	holin	lysis
UHGV-0201696_16	UniRef90	UniRef90_UPI000A26D838	holin	NA
UHGV-0201696_16	eggNOG-mapper	553184.ATORI0001_1165	Putative lactococcus lactis phage r1t holin	NA
UHGV-0201696_16	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0201696_16	Structural annotation	PF16945	NA	NA
UHGV-0201696_18	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0201696_18	PHROG	phrog_14048	endolysin	lysis
UHGV-0201696_18	UniRef90	UniRef90_A0A229VY92	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0201696_18	eggNOG-mapper	585198.HMPREF0574_1006	CW_7 repeat	NA
UHGV-0201696_18	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0201696_18	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0201696_18	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0201696_18	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0201696_19	KOfam	K14059	int; integrase	NA
UHGV-0201696_19	PHROG	phrog_1	integrase	integration and excision
UHGV-0201696_19	UniRef90	UniRef90_A0A6B1SX81	Tyrosine-type recombinase/integrase	NA
UHGV-0201696_19	eggNOG-mapper	742742.HMPREF9452_01026	Belongs to the 'phage' integrase family	NA
UHGV-0201696_19	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0201696_19	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0201696_19	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0201696_19	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0201696_20	KOfam	K00262	E1.4.1.4, gdhA; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]	NA
UHGV-0201696_20	UniRef90	UniRef90_A0A5K1IID9	Glutamate dehydrogenase	NA
UHGV-0201696_20	eggNOG-mapper	445975.COLSTE_01916	Belongs to the Glu Leu Phe Val dehydrogenases family	NA
UHGV-0201696_20	Pfam	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain	ELFV_dehydrog_N
UHGV-0201696_20	Pfam	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase	ELFV_dehydrog
UHGV-0201696_20	NCBIFam	NF006929.0	NADP-specific glutamate dehydrogenase	NA
UHGV-0201696_20	COG	COG0334	Glutamate dehydrogenase/leucine dehydrogenase	NA
UHGV-0201696_20	Structural annotation	PF00208, PF02812, MF_01619, NF006929, COG0334	NA	NA
UHGV-0201696_21	UniRef90	UniRef90_A0A5K1IRR1	TGc domain-containing protein	NA
UHGV-0201696_21	eggNOG-mapper	1437608.BBIA_2226	Transglutaminase-like superfamily	NA
UHGV-0201696_21	Pfam	PF01841	Transglutaminase-like superfamily	Transglut_core
UHGV-0201696_21	COG	COG5279	Cytokinesis protein 3, contains TGc (transglutaminase/protease-like) domain	NA
UHGV-0201696_22	UniRef90	UniRef90_C9R832	HTH_17 domain-containing protein	NA
UHGV-0201696_22	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0201696_22	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0201696_22	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0201696_24	eggNOG-mapper	754027.HMPREF9554_00001	NA	NA
UHGV-0201696_24	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0201696_25	PHROG	phrog_15768	NA	unknown function
UHGV-0201696_25	Structural annotation	PF19808	NA	NA
UHGV-0201696_28	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0201696_28	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0201696_28	UniRef90	UniRef90_A0A1Y4HW44	Single-stranded DNA-binding protein	NA
UHGV-0201696_28	eggNOG-mapper	445975.COLSTE_01126	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0201696_28	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0201696_28	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0201696_28	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0201696_28	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0201696_31	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0201696_31	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0201696_33	PHROG	phrog_21525	NA	unknown function
UHGV-0201696_36	eggNOG-mapper	1192759.AKIB01000051_gene962	NA	NA
UHGV-0201696_36	Pfam	PF00249	Myb-like DNA-binding domain	Myb_DNA-binding
UHGV-0201696_38	KOfam	K14059	int; integrase	NA
UHGV-0201696_38	PHROG	phrog_1	integrase	integration and excision
UHGV-0201696_38	UniRef90	UniRef90_A0A6N7RMN4	Tyrosine-type recombinase/integrase	NA
UHGV-0201696_38	eggNOG-mapper	553184.ATORI0001_1194	Belongs to the 'phage' integrase family	NA
UHGV-0201696_38	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0201696_38	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0201696_38	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0201696_39	eggNOG-mapper	445975.COLSTE_02169	NA	NA
UHGV-0201696_39	Structural annotation	PF07374, NF001067, COG2739	NA	NA
UHGV-0201696_40	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0201696_40	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0201696_40	UniRef90	UniRef90_R6HBK1	YcfA-like protein	NA
UHGV-0201696_40	eggNOG-mapper	563192.HMPREF0179_00193	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0201696_40	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0201696_40	Structural annotation	PF07927	NA	NA
UHGV-0201696_41	UniRef90	UniRef90_A0A5C7EUS4	Helix-turn-helix domain-containing protein	NA
UHGV-0201696_41	eggNOG-mapper	742722.HMPREF9463_00773	Helix-turn-helix domain	NA
UHGV-0201696_41	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0201696_41	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0201696_41	Structural annotation	PF15970, PF12728, TIGR01764, COG1598, COG3311	NA	NA
UHGV-0201696_43	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0201696_43	UniRef90	UniRef90_A0A3G9K6W4	HNHc domain-containing protein	NA
UHGV-0201696_43	eggNOG-mapper	521003.COLINT_02336	HNH nucleases	NA
UHGV-0201696_43	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0201696_43	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0201696_43	Structural annotation	PF01844	NA	NA
UHGV-0201696_45	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0201696_45	UniRef90	UniRef90_A0A3G9K0Y6	Phage terminase	NA
UHGV-0201696_45	eggNOG-mapper	1203602.HMPREF1527_01095	Terminase	NA
UHGV-0201696_45	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0201696_45	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0201696_46	PHROG	phrog_104	portal protein	head and packaging
UHGV-0201696_46	UniRef90	UniRef90_UPI000E3EB376	phage portal protein	NA
UHGV-0201696_46	eggNOG-mapper	1121866.AUGK01000014_gene2057	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0201696_46	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0201696_47	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0201696_47	UniRef90	UniRef90_R7BP20	CdiA_C domain-containing protein	NA
UHGV-0201696_47	eggNOG-mapper	521003.COLINT_02341	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0201696	Yes	31,823 bps	68.06%	100.00%	0.9525
UHGV-0128248	No	24,087 bps	68.73%	68.39%	0.9560
UHGV-0135091	No	20,945 bps	67.41%	62.56%	0.9481