vOTU-047553

Overview

vOTU representative UHGV-0202241

No. of genomes 4

Genome length 58,222 bps

Completeness 100.00% (complete)

Host Agathobacter faecis

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-047553
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00007 › vSUBFAM-00040 › vGENUS-00013 › vSUBGEN-39294 › vOTU-047553
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Lachnospirales › Lachnospiraceae › Agathobacter › Agathobacter faecis
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0202241
BioSample	NA
Genome length	58,222 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	100
CDS density	86.51%
tRNA count	2
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0202241_2	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0202241_2	UniRef90	UniRef90_A0A7U3T981	Helix-turn-helix DNA binding domain protein	NA
UHGV-0202241_2	eggNOG-mapper	1460635.JCM19038_3433	NA	NA
UHGV-0202241_3	PHROG	phrog_19106	NA	unknown function
UHGV-0202241_3	UniRef90	UniRef90_A0A412EKN4	GIY-YIG nuclease family protein	NA
UHGV-0202241_3	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0202241_3	Structural annotation	TIGR01453	NA	NA
UHGV-0202241_4	PHROG	phrog_11769	NA	unknown function
UHGV-0202241_4	UniRef90	UniRef90_A0A173RDT0	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0202241_4	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0202241_4	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0202241_4	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0202241_4	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0202241_5	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0202241_5	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0202241_5	UniRef90	UniRef90_A0A173RD23	DNA helicase	NA
UHGV-0202241_5	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0202241_5	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0202241_5	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0202241_5	COG	COG0305	Replicative DNA helicase	NA
UHGV-0202241_5	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0202241_9	eggNOG-mapper	411459.RUMOBE_01111	NA	NA
UHGV-0202241_12	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0202241_12	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0202241_12	UniRef90	UniRef90_A0A1Q6JBY5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0202241_12	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0202241_12	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0202241_12	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0202241_12	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0202241_12	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0202241_15	PHROG	phrog_874	NA	unknown function
UHGV-0202241_15	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0202241_15	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0202241_18	UniRef90	UniRef90_R9JVS8	Methyltransferase	NA
UHGV-0202241_18	eggNOG-mapper	397291.C804_00949	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0202241_18	COG	COG0863	DNA modification methylase	NA
UHGV-0202241_19	UniRef90	UniRef90_A0A173RE24	Bacterial regulatory proteins, luxR family	NA
UHGV-0202241_19	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0202241_19	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0202241_20	KOfam	K14059	int; integrase	NA
UHGV-0202241_20	PHROG	phrog_1	integrase	integration and excision
UHGV-0202241_20	UniRef90	UniRef90_A0A173REA3	Site-specific tyrosine recombinase XerD	NA
UHGV-0202241_20	eggNOG-mapper	397291.C804_00897	Phage integrase family	NA
UHGV-0202241_20	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0202241_20	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0202241_20	Structural annotation	PF00589, PF02920, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0202241_21	KOfam	K01142	E3.1.11.2, xthA; exodeoxyribonuclease III [EC:3.1.11.2]	NA
UHGV-0202241_21	PHROG	phrog_19169	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0202241_21	UniRef90	UniRef90_A0A173UE92	Exodeoxyribonuclease III	NA
UHGV-0202241_21	eggNOG-mapper	622312.ROSEINA2194_01924	exodeoxyribonuclease III	NA
UHGV-0202241_21	Pfam	PF03372	Endonuclease/Exonuclease/phosphatase family	Exo_endo_phos
UHGV-0202241_21	NCBIFam	TIGR00633.1	exodeoxyribonuclease III	NA
UHGV-0202241_21	COG	COG0708	Exonuclease III	NA
UHGV-0202241_21	Structural annotation	PF03372, MF_01119, NF010489, COG0708	NA	NA
UHGV-0202241_23	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0202241_24	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0202241_25	PHROG	phrog_16490	NA	unknown function
UHGV-0202241_25	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0202241_26	PHROG	phrog_20016	NA	unknown function
UHGV-0202241_26	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0202241_26	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0202241_26	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0202241_27	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0202241_28	PHROG	phrog_1233	NA	unknown function
UHGV-0202241_28	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0202241_28	Structural annotation	PF13058	NA	NA
UHGV-0202241_31	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0202241_31	UniRef90	UniRef90_UPI001C02FA3A	Rha family transcriptional regulator	NA
UHGV-0202241_31	eggNOG-mapper	1235793.C809_02221	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0202241_31	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0202241_31	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0202241_31	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0202241_32	UniRef90	UniRef90_A0A173UED2	Predicted transcriptional regulator	NA
UHGV-0202241_32	eggNOG-mapper	1280689.AUJC01000024_gene150	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0202241_35	Structural annotation	PF13973	NA	NA
UHGV-0202241_36	eggNOG-mapper	397290.C810_01348	NA	NA
UHGV-0202241_40	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0202241_40	UniRef90	UniRef90_A0A173UEE2	Predicted transcriptional regulator	NA
UHGV-0202241_40	eggNOG-mapper	1235790.C805_00736	Transcriptional regulator	NA
UHGV-0202241_40	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0202241_40	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0202241_40	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0202241_44	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0202241_45	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0202241_45	UniRef90	UniRef90_UPI001D02B1F9	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0202241_45	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0202241_45	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0202241_45	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0202241_45	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0202241_46	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0202241_50	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-0202241_57	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0202241_57	UniRef90	UniRef90_UPI001D009E65	phage terminase large subunit	NA
UHGV-0202241_57	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0202241_57	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0202241_57	COG	COG5410	NA	NA
UHGV-0202241_57	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0202241_58	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0202241_58	UniRef90	UniRef90_A0A410QFZ6	NA	NA
UHGV-0202241_58	eggNOG-mapper	994573.T472_0211085	sigma factor activity	NA
UHGV-0202241_58	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0202241_58	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0202241_59	PHROG	phrog_64	portal protein	head and packaging
UHGV-0202241_59	UniRef90	UniRef90_A0A173UGW9	Phage portal protein, SPP1 family	NA
UHGV-0202241_59	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0202241_59	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0202241_59	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0202241_60	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0202241_61	PHROG	phrog_909	major head protein	head and packaging
UHGV-0202241_61	eggNOG-mapper	1232453.BAIF02000058_gene1627	NA	NA
UHGV-0202241_62	PHROG	phrog_29	major head protein	head and packaging
UHGV-0202241_62	UniRef90	UniRef90_UPI001BB87CDE	Major capsid protein	NA
UHGV-0202241_62	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0202241_62	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0202241_62	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0202241_63	Structural annotation	PF21169	NA	NA
UHGV-0202241_64	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0202241_65	PHROG	phrog_4105	NA	unknown function
UHGV-0202241_65	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0202241_66	PHROG	phrog_443	holin	lysis
UHGV-0202241_66	UniRef90	UniRef90_UPI000BA3B743	holin	NA
UHGV-0202241_66	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0202241_66	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0202241_66	Structural annotation	PF16945	NA	NA
UHGV-0202241_67	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0202241_68	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0202241_68	AcrCatalog	cluster_24841	NA	NA
UHGV-0202241_69	Structural annotation	PF05657	NA	NA
UHGV-0202241_70	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0202241_70	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0202241_73	PHROG	phrog_14030	NA	unknown function
UHGV-0202241_73	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-0202241_73	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0202241_73	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0202241_74	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0202241_74	UniRef90	UniRef90_A0A173UHS1	Phage-related protein	NA
UHGV-0202241_74	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-0202241_74	COG	COG1511	NA	NA
UHGV-0202241_74	Structural annotation	PF20155, MF_04138	NA	NA
UHGV-0202241_75	UniRef90	UniRef90_A0A173UG14	BIG2 domain-containing protein	NA
UHGV-0202241_75	eggNOG-mapper	1410624.JNKK01000088_gene2110	Bacterial Ig-like domain (group 2)	NA
UHGV-0202241_75	Structural annotation	PF02368, PF07233, NF038353, NF005261	NA	NA
UHGV-0202241_76	PHROG	phrog_1194	NA	unknown function
UHGV-0202241_76	Pfam	PF20458	NA	DUF6711
UHGV-0202241_76	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0202241_77	PHROG	phrog_18190	NA	unknown function
UHGV-0202241_77	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0202241_77	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-0202241_77	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0202241_77	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0202241_78	PHROG	phrog_17196	kinase	other
UHGV-0202241_78	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0202241_78	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0202241_80	eggNOG-mapper	610130.Closa_0760	NA	NA
UHGV-0202241_81	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0202241_81	Structural annotation	NF040910	NA	NA
UHGV-0202241_83	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0202241_83	UniRef90	UniRef90_A0A416SLU4	XRE family transcriptional regulator	NA
UHGV-0202241_83	eggNOG-mapper	476272.RUMHYD_03305	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0202241_83	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0202241_83	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0202241_83	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0202241_84	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0202241_84	UniRef90	UniRef90_A0A412ELD4	XRE family transcriptional regulator	NA
UHGV-0202241_84	eggNOG-mapper	469609.HMPREF0847_00376	DNA-binding helix-turn-helix protein	NA
UHGV-0202241_84	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0202241_84	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0202241_84	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0202241_84	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0202241_87	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0202241_87	UniRef90	UniRef90_A0A173RD24	ORF6N domain	NA
UHGV-0202241_87	eggNOG-mapper	1408823.AXUS01000024_gene2689	ORF6C domain	NA
UHGV-0202241_87	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0202241_87	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0202241_91	PHROG	phrog_26861	NA	unknown function
UHGV-0202241_91	UniRef90	UniRef90_A0A173RCS5	Single-stranded DNA-binding protein	NA
UHGV-0202241_91	eggNOG-mapper	483218.BACPEC_01931	Single-strand binding protein family	NA
UHGV-0202241_91	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0202241_91	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0202241_91	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0202241_92	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0202241_92	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0202241_92	UniRef90	UniRef90_UPI001D02FD96	AAA family ATPase	NA
UHGV-0202241_92	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0202241_92	Pfam	PF13555	P-loop containing region of AAA domain	AAA_29
UHGV-0202241_92	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0202241_92	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0202241_94	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0202241_97	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0202241_97	UniRef90	UniRef90_UPI00157154DF	recombinase RecT	NA
UHGV-0202241_97	eggNOG-mapper	1232453.BAIF02000057_gene1136	NA	NA
UHGV-0202241_97	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0202241_98	PHROG	phrog_25456	NA	unknown function
UHGV-0202241_99	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0202241_99	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0202241_99	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-0202241_99	eggNOG-mapper	1144313.PMI10_00501	Metallo-beta-lactamase superfamily	NA
UHGV-0202241_99	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0202241_99	dbAPIS	APIS058	NA	NA
UHGV-0202241_99	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0202241_99	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0202241_100	Structural annotation	PF17457	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0202241	Yes	58,222 bps	40.55%	100.00%	0.9810
UHGV-1417592	No	57,841 bps	40.49%	99.90%	0.9810
UHGV-0236159	No	56,899 bps	40.43%	98.67%	0.9801
UHGV-0148937	No	28,441 bps	40.49%	49.32%	0.9813