vOTU-047563

Overview

vOTU representative UHGV-0202423

No. of genomes 2

Genome length 42,996 bps

Completeness 100.00% (complete)

Host Gemmiger sp004555405

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-047563
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 › vSUBFAM-01501 › vGENUS-02061 › vSUBGEN-16803 › vOTU-047563
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Gemmiger › Gemmiger sp004555405
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0202423
BioSample	SAMN09781733
Genome length	42,996 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	70
CDS density	90.52%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0202423_2	Structural annotation	PF07638, MF_00674, TIGR02954, COG1846	NA	NA
UHGV-0202423_3	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-0202423_3	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0202423_5	PHROG	phrog_1129	holin	lysis
UHGV-0202423_5	UniRef90	UniRef90_A0A1G9U2I2	Phage holin family Hol44, holin superfamily V	NA
UHGV-0202423_5	eggNOG-mapper	537013.CLOSTMETH_03774	NA	NA
UHGV-0202423_5	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0202423_5	Structural annotation	PF16079	NA	NA
UHGV-0202423_6	PHROG	phrog_937	hemolysin	other
UHGV-0202423_6	eggNOG-mapper	693746.OBV_19000	NA	NA
UHGV-0202423_7	KOfam	K07273	acm; lysozyme	NA
UHGV-0202423_7	PHROG	phrog_291	endolysin	lysis
UHGV-0202423_7	UniRef90	UniRef90_UPI00195E5E78	glycoside hydrolase family 25 protein	NA
UHGV-0202423_7	eggNOG-mapper	411471.SUBVAR_06927	Glycosyl hydrolases family 25	NA
UHGV-0202423_7	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0202423_7	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0202423_7	Structural annotation	PF01183, MF_02227, NF002576, COG3757	NA	NA
UHGV-0202423_12	eggNOG-mapper	428125.CLOLEP_01435	NA	NA
UHGV-0202423_13	PHROG	phrog_13589	NA	unknown function
UHGV-0202423_13	eggNOG-mapper	428125.CLOLEP_01434	NA	NA
UHGV-0202423_14	PHROG	phrog_31538	NA	unknown function
UHGV-0202423_14	eggNOG-mapper	428125.CLOLEP_01433	NA	NA
UHGV-0202423_15	PHROG	phrog_1084	NA	unknown function
UHGV-0202423_15	UniRef90	UniRef90_F7V7L8	ABC-type amino acid transport system	NA
UHGV-0202423_15	eggNOG-mapper	665956.HMPREF1032_00696	NA	NA
UHGV-0202423_15	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-0202423_17	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0202423_17	eggNOG-mapper	665956.HMPREF1032_03917	NA	NA
UHGV-0202423_17	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0202423_18	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-0202423_18	Structural annotation	PF20387	NA	NA
UHGV-0202423_20	PHROG	phrog_371	major head protein	head and packaging
UHGV-0202423_20	UniRef90	UniRef90_UPI00164C0E21	Mu-like prophage major head subunit gpT family protein	NA
UHGV-0202423_20	eggNOG-mapper	693746.OBV_23890	NA	NA
UHGV-0202423_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0202423_21	PHROG	phrog_35275	NA	unknown function
UHGV-0202423_21	eggNOG-mapper	1226322.HMPREF1545_03846	NA	NA
UHGV-0202423_23	PHROG	phrog_156	portal protein	head and packaging
UHGV-0202423_23	eggNOG-mapper	693746.OBV_23930	NA	NA
UHGV-0202423_23	Structural annotation	PF12236, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0202423_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0202423_25	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0202423_25	UniRef90	UniRef90_UPI001F401ABC	terminase family protein	NA
UHGV-0202423_25	eggNOG-mapper	316274.Haur_0564	NA	NA
UHGV-0202423_25	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0202423_25	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0202423_27	Structural annotation	PF03869, NF010256, COG4877	NA	NA
UHGV-0202423_28	UniRef90	UniRef90_UPI0018758D33	NA	NA
UHGV-0202423_28	Structural annotation	PF03869, NF010256, COG4877	NA	NA
UHGV-0202423_30	PHROG	phrog_15863	NA	unknown function
UHGV-0202423_30	UniRef90	UniRef90_UPI0018766E78	J domain-containing protein	NA
UHGV-0202423_30	eggNOG-mapper	1121342.AUCO01000030_gene2587	DnaJ molecular chaperone homology domain	NA
UHGV-0202423_30	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0202423_33	Structural annotation	PF17917	NA	NA
UHGV-0202423_34	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0202423_34	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0202423_34	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0202423_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0202423_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0202423_37	Structural annotation	PF02888	NA	NA
UHGV-0202423_39	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0202423_39	UniRef90	UniRef90_UPI001C0F5697	NA	NA
UHGV-0202423_39	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0202423_39	Pfam	PF06356	NA	DUF1064
UHGV-0202423_39	Structural annotation	PF06356	NA	NA
UHGV-0202423_41	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0202423_41	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0202423_41	UniRef90	UniRef90_A0A1C6E5W1	Methyltransferase	NA
UHGV-0202423_41	eggNOG-mapper	749222.Nitsa_1817	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0202423_41	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0202423_41	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0202423_41	COG	COG0863	DNA modification methylase	NA
UHGV-0202423_41	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0202423_44	Structural annotation	PF11417	NA	NA
UHGV-0202423_45	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0202423_45	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0202423_45	UniRef90	UniRef90_A0A8J8SIG0	DnaD domain protein	NA
UHGV-0202423_45	eggNOG-mapper	706434.HMPREF9429_00547	DnaD domain protein	NA
UHGV-0202423_45	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0202423_45	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0202423_45	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0202423_47	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0202423_47	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0202423_47	UniRef90	UniRef90_A0A2A7ALU9	Single-stranded DNA-binding protein	NA
UHGV-0202423_47	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0202423_47	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0202423_47	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0202423_47	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0202423_47	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0202423_47	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0202423_49	PHROG	phrog_7566	NA	unknown function
UHGV-0202423_49	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0202423_50	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0202423_50	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0202423_50	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0202423_50	Structural annotation	PF05772	NA	NA
UHGV-0202423_51	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0202423_51	UniRef90	UniRef90_A0A843HUJ5	NA	NA
UHGV-0202423_51	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-0202423_51	Pfam	PF06378	NA	DUF1071
UHGV-0202423_51	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0202423_52	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0202423_52	UniRef90	UniRef90_A0A3E2U1Y9	DNA cytosine methyltransferase	NA
UHGV-0202423_52	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0202423_52	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0202423_52	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0202423_57	PHROG	phrog_4433	NA	unknown function
UHGV-0202423_57	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0202423_57	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0202423_57	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0202423_58	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0202423_58	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0202423_58	UniRef90	UniRef90_A0A252F729	Bro-N domain-containing protein	NA
UHGV-0202423_58	eggNOG-mapper	1122146.AUHP01000010_gene1023	BRO family, N-terminal domain	NA
UHGV-0202423_58	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0202423_58	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0202423_58	COG	COG3617	Prophage antirepressor	NA
UHGV-0202423_58	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0202423_60	UniRef90	UniRef90_UPI001C2729A1	helix-turn-helix domain-containing protein	NA
UHGV-0202423_60	eggNOG-mapper	1163671.JAGI01000002_gene2855	NA	NA
UHGV-0202423_60	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0202423_61	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0202423_61	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0202423_61	UniRef90	UniRef90_UPI00156FD589	helix-turn-helix domain-containing protein	NA
UHGV-0202423_61	eggNOG-mapper	1235796.C815_01514	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0202423_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0202423_61	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0202423_64	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0202423_64	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0202423_64	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0202423_64	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0202423_65	KOfam	K14059	int; integrase	NA
UHGV-0202423_65	PHROG	phrog_1	integrase	integration and excision
UHGV-0202423_65	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-0202423_65	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0202423_65	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0202423_65	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0202423_65	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0202423_65	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0202423_68	UniRef90	UniRef90_A0A1Y3RJS2	Sigma70_r4_2 domain-containing protein	NA
UHGV-0202423_69	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0202423_69	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0202423_69	UniRef90	UniRef90_UPI001C0F4BC0	phage antirepressor KilAC domain-containing protein	NA
UHGV-0202423_69	eggNOG-mapper	386415.NT01CX_2199	Phage antirepressor protein	NA
UHGV-0202423_69	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0202423_69	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0202423_69	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0202423_69	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0202423	Yes	42,996 bps	49.05%	100.00%	0.9724
UHGV-0175702	No	43,099 bps	49.11%	99.90%	0.9741