vOTU-047576

Overview

vOTU representative UHGV-0202764

No. of genomes 2

Genome length 32,798 bps

Completeness 100.00% (complete)

Host Coprococcus

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-047576
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00001 › vSUBFAM-02013 › vGENUS-02287 › vSUBGEN-02942 › vOTU-047576
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Lachnospirales › Lachnospiraceae › Coprococcus
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0202764
BioSample	SAMN09781722
Genome length	32,798 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	54
CDS density	91.50%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0202764_1	UniRef90	UniRef90_A0A8I0AQA2	Helix-turn-helix transcriptional regulator	NA
UHGV-0202764_1	eggNOG-mapper	1007096.BAGW01000035_gene1350	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0202764_1	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0202764_1	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0202764_3	PHROG	phrog_12389	NA	unknown function
UHGV-0202764_3	eggNOG-mapper	1511.CLOST_1250	NA	NA
UHGV-0202764_6	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0202764_6	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0202764_6	UniRef90	UniRef90_A0A417WAG9	HicB family protein	NA
UHGV-0202764_6	eggNOG-mapper	397287.C807_02051	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0202764_6	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0202764_6	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0202764_6	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0202764_7	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0202764_7	UniRef90	UniRef90_A0A3R6X664	Addiction module toxin, HicA family	NA
UHGV-0202764_7	eggNOG-mapper	1408311.JNJM01000002_gene1308	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0202764_7	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0202764_7	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0202764_7	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0202764_8	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0202764_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0202764_8	UniRef90	UniRef90_A0A417W8X2	XRE family transcriptional regulator	NA
UHGV-0202764_8	eggNOG-mapper	411468.CLOSCI_01455	Helix-turn-helix XRE-family like proteins	NA
UHGV-0202764_8	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0202764_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0202764_8	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0202764_10	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0202764_10	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0202764_10	UniRef90	UniRef90_A0A417W960	XRE family transcriptional regulator	NA
UHGV-0202764_10	eggNOG-mapper	1235793.C809_03587	Helix-turn-helix XRE-family like proteins	NA
UHGV-0202764_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0202764_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0202764_10	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0202764_12	PHROG	phrog_750	NA	unknown function
UHGV-0202764_12	eggNOG-mapper	97139.C824_00051	NA	NA
UHGV-0202764_12	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0202764_14	UniRef90	UniRef90_R5VU56	HTH_11 domain-containing protein	NA
UHGV-0202764_14	Structural annotation	PF20063	NA	NA
UHGV-0202764_16	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0202764_16	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-0202764_16	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0202764_17	UniRef90	UniRef90_A0A417W8Y5	RNase H type-1 domain-containing protein	NA
UHGV-0202764_17	eggNOG-mapper	411902.CLOBOL_05701	RNase H	NA
UHGV-0202764_17	Pfam	PF00075	RNase H	RNase_H
UHGV-0202764_17	COG	COG0328	Ribonuclease HI	NA
UHGV-0202764_17	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0202764_18	eggNOG-mapper	411902.CLOBOL_05699	NA	NA
UHGV-0202764_19	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-0202764_19	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0202764_20	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0202764_20	UniRef90	UniRef90_A0A3D5WJX6	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0202764_20	eggNOG-mapper	903814.ELI_3131	sulfate reduction	NA
UHGV-0202764_20	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0202764_21	PHROG	phrog_236	nucleotide kinase	other
UHGV-0202764_21	UniRef90	UniRef90_A0A417W9V0	NA	NA
UHGV-0202764_21	eggNOG-mapper	411473.RUMCAL_00920	NA	NA
UHGV-0202764_21	Pfam	PF11753	NA	DUF3310
UHGV-0202764_22	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0202764_22	UniRef90	UniRef90_A0A3R6X653	Restriction alleviation protein, Lar family	NA
UHGV-0202764_22	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0202764_22	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0202764_22	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0202764_22	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0202764_28	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0202764_28	Structural annotation	PF06530, TIGR02937, COG2739	NA	NA
UHGV-0202764_29	eggNOG-mapper	411470.RUMGNA_00254	NA	NA
UHGV-0202764_30	PHROG	phrog_1863	NA	unknown function
UHGV-0202764_30	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0202764_31	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0202764_31	PHROG	phrog_7	endolysin	lysis
UHGV-0202764_31	UniRef90	UniRef90_A0A417W8Z1	Lysozyme	NA
UHGV-0202764_31	eggNOG-mapper	397291.C804_01109	Phage lysozyme	NA
UHGV-0202764_31	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0202764_31	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0202764_31	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0202764_31	HAMAP	MF_04110	Endolysin	NA
UHGV-0202764_31	Structural annotation	PF00959, PF18342, MF_04110, COG3772, COG4991	NA	NA
UHGV-0202764_32	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0202764_32	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0202764_32	UniRef90	UniRef90_UPI0004826165	terminase small subunit	NA
UHGV-0202764_32	eggNOG-mapper	702450.CUW_0530	Terminase Small Subunit	NA
UHGV-0202764_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0202764_32	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0202764_32	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0202764_33	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0202764_33	UniRef90	UniRef90_A0A417W8X1	HNH endonuclease	NA
UHGV-0202764_33	eggNOG-mapper	642492.Clole_1853	HNH endonuclease	NA
UHGV-0202764_33	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0202764_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0202764_33	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0202764_38	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0202764_38	UniRef90	UniRef90_R7FEF5	Terminase	NA
UHGV-0202764_38	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-0202764_38	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0202764_38	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0202764_38	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0202764_38	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0202764_39	PHROG	phrog_12	portal protein	head and packaging
UHGV-0202764_39	UniRef90	UniRef90_A0A3R6X642	Phage portal protein	NA
UHGV-0202764_39	eggNOG-mapper	1157490.EL26_20720	Phage portal protein	NA
UHGV-0202764_39	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0202764_39	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0202764_39	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0202764_40	KOfam	K06904	NA	NA
UHGV-0202764_40	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0202764_40	UniRef90	UniRef90_A0A3R6UAA0	HK97 family phage prohead protease	NA
UHGV-0202764_40	eggNOG-mapper	927704.SELR_18200	Caudovirus prohead serine protease	NA
UHGV-0202764_40	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0202764_40	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0202764_40	COG	COG3740	Phage head maturation protease	NA
UHGV-0202764_40	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0202764_41	PHROG	phrog_10	major head protein	head and packaging
UHGV-0202764_41	UniRef90	UniRef90_A0A417W9T2	Phage major capsid protein	NA
UHGV-0202764_41	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-0202764_41	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0202764_41	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0202764_41	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0202764_41	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0202764_42	UniRef90	UniRef90_A0A843GGX3	Phage head-tail connector protein	NA
UHGV-0202764_42	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0202764_42	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0202764_43	UniRef90	UniRef90_A0A417W8T5	Head-tail adaptor protein	NA
UHGV-0202764_43	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0202764_43	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0202764_43	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0202764_44	Structural annotation	TIGR01725	NA	NA
UHGV-0202764_45	Structural annotation	PF05657	NA	NA
UHGV-0202764_46	PHROG	phrog_88	major tail protein	tail
UHGV-0202764_46	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-0202764_46	eggNOG-mapper	649747.HMPREF0083_01004	Phage major tail protein phi13	NA
UHGV-0202764_46	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0202764_46	COG	COG5492	NA	NA
UHGV-0202764_46	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0202764_48	PHROG	phrog_5493	tail length tape measure protein	tail
UHGV-0202764_48	UniRef90	UniRef90_A0A6N2WBJ7	Chromosome partition protein Smc	NA
UHGV-0202764_48	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0202764_48	COG	COG5283	Phage-related tail protein	NA
UHGV-0202764_48	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0202764_49	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0202764_49	UniRef90	UniRef90_A0A417W8X6	Phage tail family protein	NA
UHGV-0202764_49	eggNOG-mapper	706433.HMPREF9430_01256	Phage tail protein	NA
UHGV-0202764_49	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0202764_49	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0202764_50	PHROG	phrog_538	minor tail protein	tail
UHGV-0202764_50	UniRef90	UniRef90_UPI0004813F81	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0202764_50	eggNOG-mapper	428125.CLOLEP_01424	NA	NA
UHGV-0202764_50	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0202764_50	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0202764_51	PHROG	phrog_1220	head protein	head and packaging
UHGV-0202764_51	UniRef90	UniRef90_R6SMG3	Conserved domain protein	NA
UHGV-0202764_51	eggNOG-mapper	431943.CKL_2628	COG NOG18825 non supervised orthologous group	NA
UHGV-0202764_51	Structural annotation	PF20747	NA	NA
UHGV-0202764_52	KOfam	K14059	int; integrase	NA
UHGV-0202764_52	PHROG	phrog_1	integrase	integration and excision
UHGV-0202764_52	UniRef90	UniRef90_A0A3R6QDD5	Site-specific integrase	NA
UHGV-0202764_52	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0202764_52	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0202764_52	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0202764_52	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0202764	Yes	32,798 bps	40.37%	100.00%	0.9746
UHGV-0175129	No	32,952 bps	40.33%	85.79%	0.9783