vOTU-047739

Overview

vOTU representative UHGV-0204103

No. of genomes 3

Genome length 40,415 bps

Completeness 100.00% (complete)

Host Limivicinus

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-047739
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00040 › vSUBFAM-00520 › vGENUS-00507 › vSUBGEN-34470 › vOTU-047739
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Oscillospiraceae › Limivicinus
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0204103
BioSample	SAMN09781782
Genome length	40,415 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	56
CDS density	89.24%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0204103_1	eggNOG-mapper	1235799.C818_04245	NA	NA
UHGV-0204103_3	Structural annotation	PF03869, NF010256	NA	NA
UHGV-0204103_4	PHROG	phrog_15863	NA	unknown function
UHGV-0204103_4	UniRef90	UniRef90_UPI00068FC51E	J domain-containing protein	NA
UHGV-0204103_4	eggNOG-mapper	1519439.JPJG01000053_gene1369	DnaJ molecular chaperone homology domain	NA
UHGV-0204103_4	Pfam	PF00226	DnaJ domain	DnaJ
UHGV-0204103_4	Pfam	PF18847	Large polyvalent protein associated domain 29	LPD29
UHGV-0204103_4	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0204103_8	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0204103_8	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0204103_9	KOfam	K14059	int; integrase	NA
UHGV-0204103_9	PHROG	phrog_1	integrase	integration and excision
UHGV-0204103_9	UniRef90	UniRef90_A0A3D2G173	Tyr recombinase domain-containing protein	NA
UHGV-0204103_9	eggNOG-mapper	641112.ACOK01000111_gene1860	Phage integrase family	NA
UHGV-0204103_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0204103_9	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0204103_9	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0204103_10	UniRef90	UniRef90_A0A3C1K3F5	HTH cro/C1-type domain-containing protein	NA
UHGV-0204103_10	eggNOG-mapper	1329250.WOSG25_041380	Transcriptional regulator	NA
UHGV-0204103_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0204103_10	Structural annotation	NF007257, COG1396	NA	NA
UHGV-0204103_11	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0204103_11	UniRef90	UniRef90_A0A6N9QIX7	Restriction endonuclease	NA
UHGV-0204103_11	eggNOG-mapper	1249480.B649_06030	Restriction endonuclease	NA
UHGV-0204103_11	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0204103_11	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0204103_12	PHROG	phrog_4652	NA	unknown function
UHGV-0204103_12	eggNOG-mapper	397290.C810_01459	NA	NA
UHGV-0204103_12	Structural annotation	TIGR02582	NA	NA
UHGV-0204103_13	PHROG	phrog_15946	NA	unknown function
UHGV-0204103_13	eggNOG-mapper	1041147.AUFB01000014_gene330	NA	NA
UHGV-0204103_14	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0204103_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0204103_14	UniRef90	UniRef90_A0A644YPM1	HTH cro/C1-type domain-containing protein	NA
UHGV-0204103_14	eggNOG-mapper	1118060.CAGZ01000012_gene16	Helix-turn-helix XRE-family like proteins	NA
UHGV-0204103_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0204103_14	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0204103_15	Pfam	PF00325	Bacterial regulatory proteins, crp family	Crp
UHGV-0204103_15	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0204103_19	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0204103_19	UniRef90	UniRef90_A0A1C5T0L2	PD-(D/E)XK nuclease superfamily	NA
UHGV-0204103_19	eggNOG-mapper	1218075.BAYA01000003_gene606	NA	NA
UHGV-0204103_19	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0204103_21	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0204103_21	UniRef90	UniRef90_A0A174RC35	RecT family	NA
UHGV-0204103_21	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-0204103_21	Pfam	PF03837	RecT family	RecT
UHGV-0204103_21	Structural annotation	PF03837, TIGR01913	NA	NA
UHGV-0204103_23	Structural annotation	PF08962	NA	NA
UHGV-0204103_24	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0204103_24	UniRef90	UniRef90_A0A2Z4Q9Z3	NA	NA
UHGV-0204103_24	eggNOG-mapper	290402.Cbei_1623	NA	NA
UHGV-0204103_24	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0204103_24	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0204103_25	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0204103_25	UniRef90	UniRef90_A0A1L8CM45	Crossover junction endodeoxyribonuclease RuvC	NA
UHGV-0204103_25	eggNOG-mapper	994601.G9BW80_9CAUD	nucleic acid binding	NA
UHGV-0204103_25	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-0204103_26	KOfam	K05129	MUSK; muscle, skeletal, receptor tyrosine kinase [EC:2.7.10.1]	NA
UHGV-0204103_26	dbAPIS	APIS008	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	NA
UHGV-0204103_27	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0204103_27	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0204103_27	UniRef90	UniRef90_A0A6N3AGN0	Thioredoxin-dependent 5'-adenylylsulfate reductase	NA
UHGV-0204103_27	eggNOG-mapper	411902.CLOBOL_06768	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0204103_27	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0204103_27	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0204103_27	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0204103_27	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0204103_28	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0204103_28	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0204103_28	UniRef90	UniRef90_G4KRB8	Cytosine-specific methyltransferase	NA
UHGV-0204103_28	eggNOG-mapper	693746.OBV_01900	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0204103_28	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0204103_28	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0204103_28	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0204103_28	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0204103_28	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0204103_30	PHROG	phrog_924	NA	unknown function
UHGV-0204103_30	UniRef90	UniRef90_A0A845R8R0	NA	NA
UHGV-0204103_30	Pfam	PF04448	NA	DUF551
UHGV-0204103_30	Structural annotation	NF041588	NA	NA
UHGV-0204103_33	PHROG	phrog_7314	NA	unknown function
UHGV-0204103_35	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0204103_35	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0204103_35	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0204103_35	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0204103_35	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0204103_35	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0204103_35	Structural annotation	PF00196, MF_00959, NF006158, COG1191	NA	NA
UHGV-0204103_36	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0204103_36	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0204103_36	UniRef90	UniRef90_UPI001873736C	dUTP diphosphatase	NA
UHGV-0204103_36	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-0204103_36	Pfam	PF00692	dUTPase	dUTPase
UHGV-0204103_36	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0204103_36	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0204103_36	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0204103_37	eggNOG-mapper	1121405.dsmv_2591	NA	NA
UHGV-0204103_39	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0204103_40	UniRef90	UniRef90_A0A810QFN4	LPD3 domain-containing protein	NA
UHGV-0204103_40	eggNOG-mapper	693746.OBV_01590	NA	NA
UHGV-0204103_40	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0204103_41	eggNOG-mapper	693746.OBV_01600	NA	NA
UHGV-0204103_42	PHROG	phrog_20388	endolysin	lysis
UHGV-0204103_42	UniRef90	UniRef90_UPI00189D4A1D	phage tail tip lysozyme	NA
UHGV-0204103_42	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0204103_42	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0204103_42	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0204103_42	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0204103_42	Structural annotation	PF18013, PF01471, COG3409	NA	NA
UHGV-0204103_45	Structural annotation	PF21253, PF07210, NF038128, TIGR03000, COG2512	NA	NA
UHGV-0204103_46	PHROG	phrog_892	tail fiber protein	tail
UHGV-0204103_46	eggNOG-mapper	1408422.JHYF01000026_gene3527	nuclear chromosome segregation	NA
UHGV-0204103_46	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0204103_47	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-0204103_47	eggNOG-mapper	1519439.JPJG01000011_gene54	NA	NA
UHGV-0204103_47	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0204103_48	Structural annotation	PF16677	NA	NA
UHGV-0204103_49	eggNOG-mapper	1519439.JPJG01000011_gene57	NA	NA
UHGV-0204103_49	Structural annotation	PF11650	NA	NA
UHGV-0204103_50	PHROG	phrog_1129	holin	lysis
UHGV-0204103_50	UniRef90	UniRef90_A0A0D8J2M2	Enolase	NA
UHGV-0204103_50	eggNOG-mapper	665956.HMPREF1032_03272	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0204103_50	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0204103_50	Structural annotation	PF06946	NA	NA
UHGV-0204103_51	PHROG	phrog_1863	NA	unknown function
UHGV-0204103_51	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0204103_52	PHROG	phrog_422	major head protein	head and packaging
UHGV-0204103_52	UniRef90	UniRef90_A0A8J6JH37	Chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-0204103_52	eggNOG-mapper	693746.OBV_01700	NA	NA
UHGV-0204103_52	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-0204103_52	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0204103_54	PHROG	phrog_156	portal protein	head and packaging
UHGV-0204103_54	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-0204103_54	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0204103_56	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0204103_56	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0204103_56	UniRef90	UniRef90_A0A1M5YHQ5	Phage terminase large subunit	NA
UHGV-0204103_56	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0204103_56	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0204103_56	COG	COG1783	Phage terminase large subunit	NA
UHGV-0204103_56	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0204103	Yes	40,415 bps	52.87%	100.00%	0.9804
UHGV-0175925	No	40,355 bps	52.84%	99.90%	0.9800
UHGV-0188657	No	40,155 bps	53.14%	99.90%	0.9790