vOTU-047750

Overview

vOTU representative UHGV-0204195

No. of genomes 4

Genome length 37,673 bps

Completeness 100.00% (complete)

Host Bifidobacterium scardovii

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-047750
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00024 › vSUBFAM-04555 › vGENUS-07964 › vSUBGEN-07020 › vOTU-047750
Host taxonomy	Bacteria › Actinobacteriota › Actinomycetia › Actinomycetales › Bifidobacteriaceae › Bifidobacterium › Bifidobacterium scardovii
Host range breadth	Species
Host prediction method	PHIST
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0204195
BioSample	NA
Genome length	37,673 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	57
CDS density	92.45%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0204195_1	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0204195_1	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0204195_1	UniRef90	UniRef90_A0A087DI43	HNH endonuclease	NA
UHGV-0204195_1	eggNOG-mapper	158787.BSCA_1011	endonuclease activity	NA
UHGV-0204195_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0204195_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0204195_2	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0204195_2	UniRef90	UniRef90_A0A087DI42	Terminase	NA
UHGV-0204195_2	eggNOG-mapper	158787.BSCA_1010	Phage terminase, small subunit	NA
UHGV-0204195_2	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0204195_2	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0204195_2	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0204195_2	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0204195_3	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0204195_3	UniRef90	UniRef90_A0A087DI41	Phage terminase large subunit	NA
UHGV-0204195_3	eggNOG-mapper	158787.BSCA_1009	Phage Terminase	NA
UHGV-0204195_3	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0204195_3	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0204195_3	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0204195_3	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0204195_5	PHROG	phrog_12	portal protein	head and packaging
UHGV-0204195_5	UniRef90	UniRef90_A0A087DI39	PE-PGRS family protein	NA
UHGV-0204195_5	eggNOG-mapper	158787.BSCA_1007	Phage portal protein	NA
UHGV-0204195_5	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0204195_5	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0204195_5	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0204195_6	KOfam	K06904	NA	NA
UHGV-0204195_6	PHROG	phrog_3244	head maturation protease	head and packaging
UHGV-0204195_6	UniRef90	UniRef90_A0A087DI38	Capsid protein	NA
UHGV-0204195_6	eggNOG-mapper	158787.BSCA_1006	Phage capsid family	NA
UHGV-0204195_6	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0204195_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0204195_6	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0204195_6	COG	COG3740	Phage head maturation protease	NA
UHGV-0204195_7	PHROG	phrog_442	head-tail adaptor	connector
UHGV-0204195_7	UniRef90	UniRef90_A0A087DI37	Mobile element protein	NA
UHGV-0204195_7	eggNOG-mapper	158787.BSCA_1005	NA	NA
UHGV-0204195_7	Structural annotation	TIGR02215	NA	NA
UHGV-0204195_8	PHROG	phrog_501	head closure Hc1	connector
UHGV-0204195_8	eggNOG-mapper	158787.BSCA_1004	NA	NA
UHGV-0204195_9	PHROG	phrog_5837	head closure Hc1	connector
UHGV-0204195_9	eggNOG-mapper	158787.BSCA_1003	NA	NA
UHGV-0204195_9	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0204195_10	eggNOG-mapper	158787.BSCA_1002	NA	NA
UHGV-0204195_10	Structural annotation	PF16807, NF040576, COG3167	NA	NA
UHGV-0204195_11	PHROG	phrog_476	major tail protein	tail
UHGV-0204195_11	UniRef90	UniRef90_A0A087DI33	Major tail subunit	NA
UHGV-0204195_11	eggNOG-mapper	158787.BSCA_1001	NA	NA
UHGV-0204195_11	Structural annotation	PF09393, TIGR01603, COG3498	NA	NA
UHGV-0204195_12	UniRef90	UniRef90_A0A087DI32	Bacterial surface protein	NA
UHGV-0204195_12	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0204195_12	COG	COG5492	NA	NA
UHGV-0204195_12	Structural annotation	PF02368, NF038186	NA	NA
UHGV-0204195_13	PHROG	phrog_5010	tail assembly chaperone	tail
UHGV-0204195_13	eggNOG-mapper	158787.BSCA_0999	NA	NA
UHGV-0204195_14	PHROG	phrog_8183	tail assembly chaperone	tail
UHGV-0204195_14	UniRef90	UniRef90_D9UUH7	Predicted protein	NA
UHGV-0204195_14	eggNOG-mapper	158787.BSCA_0998	NA	NA
UHGV-0204195_15	PHROG	phrog_971	endolysin	lysis
UHGV-0204195_15	UniRef90	UniRef90_A0A087DI29	NA	NA
UHGV-0204195_15	eggNOG-mapper	158787.BSCA_0997	Transglycosylase SLT domain	NA
UHGV-0204195_15	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0204195_15	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0204195_15	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0204195_15	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0204195_15	Structural annotation	PF20155, NF033742, COG3941	NA	NA
UHGV-0204195_16	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0204195_16	UniRef90	UniRef90_A0A086YZT6	Phage tail protein gp51	NA
UHGV-0204195_16	eggNOG-mapper	158787.BSCA_0996	NA	NA
UHGV-0204195_16	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0204195_17	PHROG	phrog_1885	minor tail protein	tail
UHGV-0204195_17	eggNOG-mapper	158787.BSCA_0995	NA	NA
UHGV-0204195_17	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0204195_19	UniRef90	UniRef90_A0A087D402	Putative tail fiber protein	NA
UHGV-0204195_19	eggNOG-mapper	158787.BSCA_1863	NA	NA
UHGV-0204195_19	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0204195_21	PHROG	phrog_4105	NA	unknown function
UHGV-0204195_21	UniRef90	UniRef90_A0A087DI22	Phage minor structural protein	NA
UHGV-0204195_21	eggNOG-mapper	158787.BSCA_0990	NA	NA
UHGV-0204195_22	KOfam	K07273	acm; lysozyme	NA
UHGV-0204195_22	PHROG	phrog_291	endolysin	lysis
UHGV-0204195_22	UniRef90	UniRef90_UPI00066726DA	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0204195_22	eggNOG-mapper	158787.BSCA_0720	Glycosyl hydrolases family 25	NA
UHGV-0204195_22	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0204195_22	Pfam	PF01476	LysM domain	LysM
UHGV-0204195_22	COG	COG1388	LysM repeat	NA
UHGV-0204195_22	Structural annotation	PF01183, NF007404, COG3757, COG1388	NA	NA
UHGV-0204195_23	PHROG	phrog_881	holin	lysis
UHGV-0204195_23	UniRef90	UniRef90_A0A087DI20	Holin	NA
UHGV-0204195_23	eggNOG-mapper	158787.BSCA_0988	Putative phage holin Dp-1	NA
UHGV-0204195_23	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0204195_23	Structural annotation	PF16938	NA	NA
UHGV-0204195_24	KOfam	K14059	int; integrase	NA
UHGV-0204195_24	PHROG	phrog_1	integrase	integration and excision
UHGV-0204195_24	UniRef90	UniRef90_UPI000665A52D	tyrosine-type recombinase/integrase	NA
UHGV-0204195_24	eggNOG-mapper	158787.BSCA_1044	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0204195_24	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0204195_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0204195_24	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0204195_24	Structural annotation	PF00589, PF02920, MF_01808, TIGR02224, COG4974, COG3422	NA	NA
UHGV-0204195_25	UniRef90	UniRef90_A0A0G9M842	ImpB/MucB/SamB family protein	NA
UHGV-0204195_25	eggNOG-mapper	158787.BSCA_1043	NA	NA
UHGV-0204195_26	UniRef90	UniRef90_A0A087DI75	Putative membrane spanning protein	NA
UHGV-0204195_26	eggNOG-mapper	158787.BSCA_1042	NA	NA
UHGV-0204195_28	UniRef90	UniRef90_UPI0006679AE2	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0204195_28	eggNOG-mapper	1437609.BCAL_0717	NA	NA
UHGV-0204195_28	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0204195_28	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0204195_29	UniRef90	UniRef90_UPI000A89F408	virulence RhuM family protein	NA
UHGV-0204195_29	eggNOG-mapper	762211.BSTEL_1987	Virulence protein RhuM family	NA
UHGV-0204195_29	Pfam	PF13310	Virulence protein RhuM family	Virulence_RhuM
UHGV-0204195_29	COG	COG3943	NA	NA
UHGV-0204195_29	Structural annotation	PF13310, TIGR02681, COG3943	NA	NA
UHGV-0204195_30	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0204195_30	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0204195_30	UniRef90	UniRef90_B7GTE8	HSDR_N_2 domain-containing protein	NA
UHGV-0204195_30	eggNOG-mapper	158787.BSCA_1907	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0204195_30	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0204195_30	COG	COG4748	NA	NA
UHGV-0204195_30	Structural annotation	PF13588, COG4748	NA	NA
UHGV-0204195_31	UniRef90	UniRef90_UPI000666EEB4	helix-turn-helix domain-containing protein	NA
UHGV-0204195_31	eggNOG-mapper	1437609.BCAL_1723	Helix-turn-helix XRE-family like proteins	NA
UHGV-0204195_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0204195_32	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-0204195_32	UniRef90	UniRef90_UPI0006674DD2	helix-turn-helix transcriptional regulator	NA
UHGV-0204195_32	eggNOG-mapper	1437609.BCAL_0146	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0204195_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0204195_34	UniRef90	UniRef90_W4NCM8	Anthranilate phosphoribosyltransferase	NA
UHGV-0204195_34	eggNOG-mapper	158787.BSCA_1034	NA	NA
UHGV-0204195_34	Structural annotation	PF07092, NF011813, COG5608	NA	NA
UHGV-0204195_35	eggNOG-mapper	158787.BSCA_1033	NA	NA
UHGV-0204195_39	eggNOG-mapper	158787.BSCA_1031	NA	NA
UHGV-0204195_40	UniRef90	UniRef90_UPI001BDCB8BA	DNA-binding protein	NA
UHGV-0204195_40	eggNOG-mapper	158787.BSCA_1030	NA	NA
UHGV-0204195_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0204195_41	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0204195_41	UniRef90	UniRef90_UPI000668989C	single-stranded DNA-binding protein	NA
UHGV-0204195_41	eggNOG-mapper	158787.BSCA_1898	Single-strand binding protein family	NA
UHGV-0204195_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0204195_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0204195_41	Structural annotation	PF00436, MF_00984, NF005851, COG2965	NA	NA
UHGV-0204195_42	eggNOG-mapper	158787.BSCA_1027	NA	NA
UHGV-0204195_44	eggNOG-mapper	158787.BSCA_1025	NA	NA
UHGV-0204195_44	Structural annotation	PF14947, MF_01819, NF003025, COG1321	NA	NA
UHGV-0204195_45	PHROG	phrog_1032	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0204195_45	UniRef90	UniRef90_A0A087DI56	Cryptic prophage protein	NA
UHGV-0204195_45	eggNOG-mapper	1437608.BBIA_2175	Transcriptional regulator	NA
UHGV-0204195_45	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0204195_45	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0204195_45	Structural annotation	PF13730, MF_01819, TIGR01610, COG5529	NA	NA
UHGV-0204195_46	UniRef90	UniRef90_A0A1X3AD95	Cryptic prophage protein	NA
UHGV-0204195_46	eggNOG-mapper	1437608.BBIA_1862	NA	NA
UHGV-0204195_46	Structural annotation	PF17209, NF011231, COG1923	NA	NA
UHGV-0204195_47	PHROG	phrog_740	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0204195_47	UniRef90	UniRef90_A0A087DI54	Leucyl-tRNA synthetase	NA
UHGV-0204195_47	eggNOG-mapper	158787.BSCA_1022	HNH endonuclease	NA
UHGV-0204195_47	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0204195_48	KOfam	K13288	orn, REX2, REXO2; oligoribonuclease [EC:3.1.-.-]	NA
UHGV-0204195_48	UniRef90	UniRef90_A0A087DI53	Oligoribonuclease	NA
UHGV-0204195_48	eggNOG-mapper	158787.BSCA_1021	3'-to-5' exoribonuclease specific for small oligoribonucleotides	NA
UHGV-0204195_48	COG	COG1949	Oligoribonuclease (3'-5' exoribonuclease)	NA
UHGV-0204195_48	Structural annotation	PF00929, MF_00045, NF003765, COG1949	NA	NA
UHGV-0204195_50	UniRef90	UniRef90_A0A5J5E5Y9	RNA polymerase subunit sigma	NA
UHGV-0204195_51	PHROG	phrog_908	NA	unknown function
UHGV-0204195_51	UniRef90	UniRef90_A0A087DI50	PhnA protein	NA
UHGV-0204195_51	eggNOG-mapper	158787.BSCA_1018	tRNA 5'-leader removal	NA
UHGV-0204195_51	COG	COG2023	Ribonuclease P protein subunit RPR2	NA
UHGV-0204195_52	eggNOG-mapper	1147128.BAST_1035	NA	NA
UHGV-0204195_54	PHROG	phrog_597	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0204195_54	UniRef90	UniRef90_A0A087DI47	Gp28 phagic protein	NA
UHGV-0204195_54	eggNOG-mapper	158787.BSCA_1015	Transcriptional regulator	NA
UHGV-0204195_54	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0204195_54	Structural annotation	PF05930, NF033499, COG3311	NA	NA
UHGV-0204195_56	UniRef90	UniRef90_A0A6L4X3D6	Head fiber protein	NA
UHGV-0204195_56	eggNOG-mapper	158787.BSCA_1013	NA	NA
UHGV-0204195_57	eggNOG-mapper	158787.BSCA_1012	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0204195	Yes	37,673 bps	61.94%	100.00%	0.9726
UHGV-1509126	No	34,579 bps	62.23%	86.65%	0.9773
UHGV-1521761	No	22,321 bps	63.83%	54.70%	0.9788
UHGV-0175545	No	20,574 bps	64.91%	50.42%	0.9749