vOTU-047855

Overview

vOTU representative UHGV-0204877

No. of genomes 1

Genome length 38,090 bps

Completeness 100.00% (complete)

Host CAG-83

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-047855
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 › vSUBFAM-00486 › vGENUS-03115 › vSUBGEN-36198 › vOTU-047855
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Oscillospiraceae › CAG-83
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0204877
BioSample	SAMN09781780
Genome length	38,090 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	45
CDS density	92.99%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0204877_1	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0204877_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0204877_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0204877_1	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0204877_2	KOfam	K14059	int; integrase	NA
UHGV-0204877_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0204877_2	UniRef90	UniRef90_R7GTS6	Site-specific recombinase phage integrase family	NA
UHGV-0204877_2	eggNOG-mapper	536233.CLO_0855	Arm DNA-binding domain	NA
UHGV-0204877_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0204877_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0204877_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0204877_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0204877_3	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0204877_3	UniRef90	UniRef90_A0A3D4D7R4	SWIM-type domain-containing protein	NA
UHGV-0204877_3	Pfam	PF04434	SWIM zinc finger	SWIM
UHGV-0204877_3	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0204877_3	COG	COG1525	Endonuclease YncB, thermonuclease family	NA
UHGV-0204877_3	Structural annotation	PF04471, MF_00722, NF002876, COG1787	NA	NA
UHGV-0204877_4	PHROG	phrog_14770	NA	unknown function
UHGV-0204877_4	eggNOG-mapper	445971.ANASTE_00728	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair	NA
UHGV-0204877_4	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0204877_4	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0204877_6	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0204877_6	PHROG	phrog_1493	endolysin	lysis
UHGV-0204877_6	UniRef90	UniRef90_A0A350TLR9	Peptidoglycan-binding domain-containing protein	NA
UHGV-0204877_6	eggNOG-mapper	553973.CLOHYLEM_04450	Ami_2	NA
UHGV-0204877_6	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0204877_6	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0204877_6	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0204877_6	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG3023	NA	NA
UHGV-0204877_7	PHROG	phrog_199	holin	lysis
UHGV-0204877_7	UniRef90	UniRef90_R6DA24	Toxin secretion/phage lysis holin	NA
UHGV-0204877_7	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0204877_7	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0204877_7	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0204877_7	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0204877_7	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0204877_10	PHROG	phrog_134	NA	unknown function
UHGV-0204877_10	UniRef90	UniRef90_A0A845N2N7	XkdX family protein	NA
UHGV-0204877_10	eggNOG-mapper	1151292.QEW_0674	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0204877_10	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0204877_10	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0204877_11	PHROG	phrog_24451	NA	unknown function
UHGV-0204877_11	eggNOG-mapper	1408437.JNJN01000040_gene189	NA	NA
UHGV-0204877_12	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0204877_12	PHROG	phrog_819	tail protein	tail
UHGV-0204877_12	eggNOG-mapper	1408437.JNJN01000002_gene1389	NA	NA
UHGV-0204877_12	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0204877_13	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0204877_13	eggNOG-mapper	693746.OBV_23870	NA	NA
UHGV-0204877_13	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0204877_14	PHROG	phrog_13046	NA	unknown function
UHGV-0204877_14	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-0204877_14	Structural annotation	PF20387	NA	NA
UHGV-0204877_15	PHROG	phrog_371	major head protein	head and packaging
UHGV-0204877_15	UniRef90	UniRef90_R6TFU9	Mu-like_gpT domain-containing protein	NA
UHGV-0204877_15	eggNOG-mapper	693746.OBV_23890	NA	NA
UHGV-0204877_15	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0204877_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0204877_16	PHROG	phrog_24113	NA	unknown function
UHGV-0204877_16	eggNOG-mapper	1226322.HMPREF1545_03847	NA	NA
UHGV-0204877_16	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0204877_17	PHROG	phrog_35275	NA	unknown function
UHGV-0204877_17	eggNOG-mapper	693746.OBV_23910	NA	NA
UHGV-0204877_19	Structural annotation	PF04606	NA	NA
UHGV-0204877_20	PHROG	phrog_156	portal protein	head and packaging
UHGV-0204877_20	eggNOG-mapper	693746.OBV_23930	NA	NA
UHGV-0204877_20	Structural annotation	PF12236, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0204877_21	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0204877_21	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0204877_21	UniRef90	UniRef90_G4KPV4	Terminase small subunit family protein	NA
UHGV-0204877_21	eggNOG-mapper	693746.OBV_23940	DNA packaging	NA
UHGV-0204877_21	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0204877_21	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0204877_21	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0204877_23	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0204877_23	eggNOG-mapper	1226322.HMPREF1545_03841	NA	NA
UHGV-0204877_23	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0204877_25	Structural annotation	NF040595	NA	NA
UHGV-0204877_29	PHROG	phrog_3136	NA	unknown function
UHGV-0204877_29	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0204877_29	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0204877_29	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0204877_29	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0204877_31	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0204877_31	UniRef90	UniRef90_R5AVW7	Putative terminase large subunit	NA
UHGV-0204877_31	eggNOG-mapper	693746.OBV_23980	phage Terminase large subunit	NA
UHGV-0204877_31	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0204877_31	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0204877_33	PHROG	phrog_15609	NA	unknown function
UHGV-0204877_33	UniRef90	UniRef90_UPI0018A87EE3	NA	NA
UHGV-0204877_33	eggNOG-mapper	693746.OBV_25390	NA	NA
UHGV-0204877_33	Pfam	PF11300	NA	DUF3102
UHGV-0204877_33	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-0204877_33	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-0204877_34	PHROG	phrog_8470	NA	unknown function
UHGV-0204877_34	UniRef90	UniRef90_UPI00195E492B	PcfJ domain-containing protein	NA
UHGV-0204877_34	eggNOG-mapper	1378168.N510_01842	PcfJ-like protein	NA
UHGV-0204877_34	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0204877_34	Structural annotation	PF14284	NA	NA
UHGV-0204877_35	PHROG	phrog_38338	NA	unknown function
UHGV-0204877_35	UniRef90	UniRef90_UPI00189B3582	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0204877_35	eggNOG-mapper	693746.OBV_24020	NA	NA
UHGV-0204877_38	PHROG	phrog_22529	NA	unknown function
UHGV-0204877_38	UniRef90	UniRef90_A0A8D9UHA1	3D containing protein	NA
UHGV-0204877_38	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0204877_38	Structural annotation	COG3584	NA	NA
UHGV-0204877_40	Structural annotation	PF15591, MF_01549, NF007981	NA	NA
UHGV-0204877_41	UniRef90	UniRef90_A0A084J9D9	Excisionase	NA
UHGV-0204877_41	eggNOG-mapper	318464.IO99_13850	Helix-turn-helix domain	NA
UHGV-0204877_41	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0204877_41	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0204877_42	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0204877_42	UniRef90	UniRef90_UPI00109BC3B9	NA	NA
UHGV-0204877_42	eggNOG-mapper	588581.Cpap_0887	NA	NA
UHGV-0204877_42	Structural annotation	PF06573	NA	NA
UHGV-0204877_43	NCBIFam	NF033223.2	YHYH domain-containing protein	NA
UHGV-0204877_43	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0204877_44	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0204877_44	UniRef90	UniRef90_UPI0019586B68	helix-turn-helix domain-containing protein	NA
UHGV-0204877_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0204877_44	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0204877_44	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0204877_45	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0204877_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0204877_45	UniRef90	UniRef90_UPI0011C7B845	helix-turn-helix domain-containing protein	NA
UHGV-0204877_45	eggNOG-mapper	1444310.JANV01000024_gene1355	Peptidase S24-like	NA
UHGV-0204877_45	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0204877_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0204877_45	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0204877_45	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0204877	Yes	38,090 bps	59.38%	100.00%	0.9793