vOTU-047870

Overview

vOTU representative UHGV-0204951

No. of genomes 3

Genome length 44,748 bps

Completeness 100.00% (complete)

Host Agathobaculum butyriciproducens

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-047870
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 › vSUBFAM-00118 › vGENUS-00683 › vSUBGEN-20704 › vOTU-047870
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Butyricicoccaceae › Agathobaculum › Agathobaculum butyriciproducens
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0204951
BioSample	NA
Genome length	44,748 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	64
CDS density	89.42%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0204951_1	UniRef90	UniRef90_UPI0004E194C7	LuxR C-terminal-related transcriptional regulator	NA
UHGV-0204951_1	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0204951_3	eggNOG-mapper	1408437.JNJN01000043_gene805	NA	NA
UHGV-0204951_5	PHROG	phrog_16490	NA	unknown function
UHGV-0204951_5	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0204951_6	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0204951_7	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0204951_9	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0204951_9	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0204951_9	UniRef90	UniRef90_A0A845MXW8	Peptidoglycan DD-metalloendopeptidase family protein	NA
UHGV-0204951_9	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-0204951_9	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0204951_9	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0204951_10	KOfam	K14059	int; integrase	NA
UHGV-0204951_10	PHROG	phrog_1	integrase	integration and excision
UHGV-0204951_10	UniRef90	UniRef90_A0A417H7X9	Site-specific integrase	NA
UHGV-0204951_10	eggNOG-mapper	1408437.JNJN01000084_gene1284	Belongs to the 'phage' integrase family	NA
UHGV-0204951_10	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0204951_10	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0204951_10	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0204951_10	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0204951_12	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0204951_13	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0204951_13	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0204951_13	UniRef90	UniRef90_A0A417HS32	XRE family transcriptional regulator	NA
UHGV-0204951_13	eggNOG-mapper	272626.lin0073	Helix-turn-helix XRE-family like proteins	NA
UHGV-0204951_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0204951_13	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0204951_13	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0204951_14	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0204951_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0204951_14	UniRef90	UniRef90_A0A417HS19	XRE family transcriptional regulator	NA
UHGV-0204951_14	eggNOG-mapper	1235792.C808_03097	Helix-turn-helix XRE-family like proteins	NA
UHGV-0204951_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0204951_14	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0204951_20	PHROG	phrog_4433	NA	unknown function
UHGV-0204951_20	UniRef90	UniRef90_UPI0015C58C2D	NA	NA
UHGV-0204951_20	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0204951_20	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0204951_20	Structural annotation	NF007410	NA	NA
UHGV-0204951_23	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0204951_23	UniRef90	UniRef90_UPI00164A4E04	siphovirus Gp157 family protein	NA
UHGV-0204951_23	eggNOG-mapper	1226322.HMPREF1545_04074	Siphovirus Gp157	NA
UHGV-0204951_23	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0204951_23	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0204951_24	PHROG	phrog_21649	NA	unknown function
UHGV-0204951_24	UniRef90	UniRef90_UPI0006B5ECE1	ERF family protein	NA
UHGV-0204951_24	eggNOG-mapper	357809.Cphy_2988	ERF superfamily	NA
UHGV-0204951_24	Pfam	PF04404	ERF superfamily	ERF
UHGV-0204951_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0204951_24	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0204951_25	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0204951_25	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0204951_25	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0204951_25	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0204951_26	eggNOG-mapper	397290.C810_01737	NA	NA
UHGV-0204951_27	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0204951_27	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0204951_27	UniRef90	UniRef90_A0A845MWL0	HNHc domain-containing protein	NA
UHGV-0204951_27	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0204951_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0204951_28	UniRef90	UniRef90_A0A845MWS0	Helix-turn-helix domain-containing protein	NA
UHGV-0204951_28	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0204951_28	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0204951_29	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0204951_29	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0204951_29	UniRef90	UniRef90_A0A417H728	Single-stranded DNA-binding protein	NA
UHGV-0204951_29	eggNOG-mapper	1408437.JNJN01000012_gene314	Single-stranded DNA-binding protein	NA
UHGV-0204951_29	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0204951_29	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0204951_29	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0204951_29	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0204951_29	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0204951_30	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0204951_30	UniRef90	UniRef90_A0A6L5TYD7	DnaD domain protein	NA
UHGV-0204951_30	eggNOG-mapper	397291.C804_01603	DnaD domain protein	NA
UHGV-0204951_30	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0204951_30	Structural annotation	PF10771, MF_01177, TIGR01610, COG0640	NA	NA
UHGV-0204951_31	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0204951_31	UniRef90	UniRef90_A0A417H6W1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0204951_31	eggNOG-mapper	697281.Mahau_0558	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0204951_31	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0204951_31	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0204951_33	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0204951_33	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0204951_33	UniRef90	UniRef90_K1R461	DNA-cytosine methyltransferase	NA
UHGV-0204951_33	eggNOG-mapper	883077.HMPREF9241_00145	C-5 cytosine-specific DNA methylase	NA
UHGV-0204951_33	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0204951_33	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0204951_33	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0204951_34	eggNOG-mapper	1232443.BAIA02000103_gene2903	NA	NA
UHGV-0204951_35	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0204951_35	PHROG	phrog_16528	DNA methyltransferase	other
UHGV-0204951_35	UniRef90	UniRef90_A0A3D5I9W8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0204951_35	eggNOG-mapper	657322.FPR_26610	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0204951_35	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0204951_35	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0204951_36	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0204951_36	PHROG	phrog_9562	NA	unknown function
UHGV-0204951_36	UniRef90	UniRef90_UPI001A9BFF4A	pentapeptide repeat-containing protein	NA
UHGV-0204951_36	eggNOG-mapper	1226322.HMPREF1545_00011	Pentapeptide repeats (8 copies)	NA
UHGV-0204951_36	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0204951_36	Pfam	PF19062	NA	DUF5758
UHGV-0204951_36	COG	COG1357	NA	NA
UHGV-0204951_36	Structural annotation	PF19062, PF13599, NF000139	NA	NA
UHGV-0204951_37	PHROG	phrog_3136	NA	unknown function
UHGV-0204951_37	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-0204951_37	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0204951_37	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0204951_37	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0204951_40	PHROG	phrog_22543	NA	unknown function
UHGV-0204951_42	PHROG	phrog_474	phosphofructokinase	other
UHGV-0204951_42	UniRef90	UniRef90_UPI0019D13FB2	NA	NA
UHGV-0204951_42	eggNOG-mapper	1203606.HMPREF1526_00237	NA	NA
UHGV-0204951_42	Pfam	PF19905	NA	DUF6378
UHGV-0204951_42	Structural annotation	PF19905	NA	NA
UHGV-0204951_43	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0204951_43	eggNOG-mapper	862517.HMPREF9225_0469	sigma factor activity	NA
UHGV-0204951_43	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0204951_44	UniRef90	UniRef90_UPI00166A7EE7	helix-turn-helix domain-containing protein	NA
UHGV-0204951_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0204951_44	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0204951_44	Structural annotation	PF01381, NF040522	NA	NA
UHGV-0204951_46	PHROG	phrog_23592	NA	unknown function
UHGV-0204951_46	eggNOG-mapper	642492.Clole_2778	NA	NA
UHGV-0204951_46	Structural annotation	PF20829	NA	NA
UHGV-0204951_48	PHROG	phrog_13890	NA	unknown function
UHGV-0204951_48	UniRef90	UniRef90_A0A845MW17	Arc family DNA-binding protein	NA
UHGV-0204951_48	eggNOG-mapper	1507.HMPREF0262_00298	NA	NA
UHGV-0204951_48	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-0204951_48	Structural annotation	PF10723, NF010256, COG4710	NA	NA
UHGV-0204951_49	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0204951_49	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0204951_49	UniRef90	UniRef90_A0A2V2FED9	Terminase small subunit	NA
UHGV-0204951_49	eggNOG-mapper	702450.CUW_0530	Terminase Small Subunit	NA
UHGV-0204951_49	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0204951_49	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0204951_49	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0204951_50	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0204951_50	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0204951_50	UniRef90	UniRef90_A0A417HVY4	PBSX family phage terminase large subunit	NA
UHGV-0204951_50	eggNOG-mapper	445971.ANASTE_00711	Phage terminase, large subunit, PBSX family	NA
UHGV-0204951_50	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0204951_50	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0204951_50	COG	COG1783	Phage terminase large subunit	NA
UHGV-0204951_50	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0204951_51	PHROG	phrog_156	portal protein	head and packaging
UHGV-0204951_51	eggNOG-mapper	1519439.JPJG01000060_gene1886	NA	NA
UHGV-0204951_51	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0204951_54	PHROG	phrog_35275	NA	unknown function
UHGV-0204951_54	eggNOG-mapper	693746.OBV_23910	NA	NA
UHGV-0204951_55	PHROG	phrog_24113	NA	unknown function
UHGV-0204951_55	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0204951_56	PHROG	phrog_371	major head protein	head and packaging
UHGV-0204951_56	UniRef90	UniRef90_UPI00164C0E21	Mu-like prophage major head subunit gpT family protein	NA
UHGV-0204951_56	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-0204951_56	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0204951_56	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0204951_57	PHROG	phrog_13046	NA	unknown function
UHGV-0204951_57	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-0204951_57	Structural annotation	PF20387	NA	NA
UHGV-0204951_58	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0204951_58	eggNOG-mapper	1232449.BAHV02000016_gene1816	NA	NA
UHGV-0204951_58	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0204951_59	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-0204951_59	PHROG	phrog_5302	tail protein	tail
UHGV-0204951_59	UniRef90	UniRef90_A0A417HW08	Collagen-like protein	NA
UHGV-0204951_59	eggNOG-mapper	1203606.HMPREF1526_00261	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0204951_59	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0204951_59	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0204951_59	Structural annotation	PF07210, PF17737, TIGR03000	NA	NA
UHGV-0204951_61	PHROG	phrog_1382	NA	unknown function
UHGV-0204951_61	eggNOG-mapper	33035.JPJF01000043_gene998	NA	NA
UHGV-0204951_63	PHROG	phrog_297	holin	lysis
UHGV-0204951_63	UniRef90	UniRef90_A0A417HAK5	Phage holin	NA
UHGV-0204951_63	eggNOG-mapper	1408437.JNJN01000039_gene392	COG COG5546 Small integral membrane protein	NA
UHGV-0204951_63	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0204951_63	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0204951_63	COG	COG5546	NA	NA
UHGV-0204951_63	Structural annotation	COG5546	NA	NA
UHGV-0204951_64	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0204951_64	PHROG	phrog_670	endolysin	lysis
UHGV-0204951_64	UniRef90	UniRef90_A0A417HAK3	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0204951_64	eggNOG-mapper	1408437.JNJN01000008_gene890	Ami_2	NA
UHGV-0204951_64	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0204951_64	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0204951_64	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0204951	Yes	44,748 bps	53.22%	100.00%	0.9808
UHGV-1448963	No	44,793 bps	53.24%	99.96%	0.9802
UHGV-0777577	No	30,190 bps	53.60%	67.35%	0.9810