vOTU-047871

Overview

vOTU representative UHGV-0204953

No. of genomes 5

Genome length 32,953 bps

Completeness 100.00% (complete)

Host Mediterraneibacter torques

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-047871
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 › vSUBFAM-00435 › vGENUS-02448 › vSUBGEN-20705 › vOTU-047871
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Lachnospirales › Lachnospiraceae › Mediterraneibacter › Mediterraneibacter torques
Host range breadth	Species
Host prediction method	PHIST
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0204953
BioSample	NA
Genome length	32,953 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	45
CDS density	92.45%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0204953_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0204953_1	UniRef90	UniRef90_A5KP73	DNA-binding helix-turn-helix protein	NA
UHGV-0204953_1	eggNOG-mapper	411460.RUMTOR_02057	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0204953_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0204953_2	UniRef90	UniRef90_A0A174BCR0	HTH cro/C1-type domain-containing protein	NA
UHGV-0204953_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0204953_2	Structural annotation	PF13560, MF_00535, TIGR03070, COG3655	NA	NA
UHGV-0204953_3	PHROG	phrog_22934	NA	unknown function
UHGV-0204953_5	PHROG	phrog_7964	NA	unknown function
UHGV-0204953_5	eggNOG-mapper	665950.HMPREF1025_02555	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0204953_5	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0204953_5	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0204953_5	Structural annotation	NF040481	NA	NA
UHGV-0204953_6	PHROG	phrog_674	NA	unknown function
UHGV-0204953_6	UniRef90	UniRef90_A0A373SW80	NA	NA
UHGV-0204953_6	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0204953_6	Pfam	PF07083	NA	DUF1351
UHGV-0204953_6	Structural annotation	PF07083	NA	NA
UHGV-0204953_7	PHROG	phrog_21649	NA	unknown function
UHGV-0204953_7	UniRef90	UniRef90_UPI001D0DD6FE	ERF family protein	NA
UHGV-0204953_7	eggNOG-mapper	411460.RUMTOR_02066	ERF superfamily	NA
UHGV-0204953_7	Pfam	PF04404	ERF superfamily	ERF
UHGV-0204953_7	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0204953_7	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0204953_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0204953_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0204953_8	UniRef90	UniRef90_A5KP83	Single-stranded DNA-binding protein	NA
UHGV-0204953_8	eggNOG-mapper	411460.RUMTOR_02067	NA	NA
UHGV-0204953_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0204953_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0204953_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0204953_8	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0204953_8	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0204953_9	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0204953_9	UniRef90	UniRef90_A5KP84	ERCC4 domain-containing protein	NA
UHGV-0204953_9	eggNOG-mapper	411460.RUMTOR_02068	NA	NA
UHGV-0204953_9	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0204953_9	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0204953_10	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0204953_10	PHROG	phrog_11992	NA	unknown function
UHGV-0204953_10	UniRef90	UniRef90_A5KP85	CHC2 zinc finger domain protein	NA
UHGV-0204953_10	eggNOG-mapper	411460.RUMTOR_02069	CHC2 zinc finger	NA
UHGV-0204953_10	PADLOC	drt-UG29	DRT	DRT
UHGV-0204953_10	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0204953_10	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0204953_10	Structural annotation	PF01807	NA	NA
UHGV-0204953_11	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0204953_11	UniRef90	UniRef90_A0A1C5YVP9	Superfamily II helicase and inactivated derivatives	NA
UHGV-0204953_11	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-0204953_11	Pfam	PF06048	NA	DUF927
UHGV-0204953_11	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0204953_11	COG	COG5519	NA	NA
UHGV-0204953_11	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0204953_12	PHROG	phrog_23374	NA	unknown function
UHGV-0204953_13	eggNOG-mapper	1235792.C808_05406	NA	NA
UHGV-0204953_13	Structural annotation	MF_00773, NF041909, COG2888	NA	NA
UHGV-0204953_14	PHROG	phrog_15077	NA	unknown function
UHGV-0204953_14	UniRef90	UniRef90_A0A354J797	RNA_pol_A_CTD domain-containing protein	NA
UHGV-0204953_14	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-0204953_14	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0204953_15	PHROG	phrog_30671	NA	unknown function
UHGV-0204953_15	UniRef90	UniRef90_A0A6I3QIW7	DNA-binding response regulator	NA
UHGV-0204953_16	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0204953_16	UniRef90	UniRef90_A0A3A6HTW3	Sigma70_r4 domain-containing protein	NA
UHGV-0204953_16	eggNOG-mapper	411460.RUMTOR_02080	NA	NA
UHGV-0204953_16	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0204953_18	PHROG	phrog_1758	acetyltransferase	other
UHGV-0204953_18	UniRef90	UniRef90_A0A239X206	NA	NA
UHGV-0204953_18	eggNOG-mapper	1336234.JAGN01000004_gene506	acetyltransferase	NA
UHGV-0204953_18	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0204953_18	Structural annotation	PF13673, MF_02210, NF000360, COG2153	NA	NA
UHGV-0204953_19	PHROG	phrog_2412	NA	unknown function
UHGV-0204953_19	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-0204953_19	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0204953_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0204953_20	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0204953_20	UniRef90	UniRef90_A5KPA1	Phage terminase, large subunit, PBSX family	NA
UHGV-0204953_20	eggNOG-mapper	411460.RUMTOR_02085	NA	NA
UHGV-0204953_20	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0204953_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0204953_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0204953_20	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0204953_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-0204953_21	UniRef90	UniRef90_A0A174B716	Phage portal protein, putative, A118 family	NA
UHGV-0204953_21	eggNOG-mapper	658655.HMPREF0988_02564	NA	NA
UHGV-0204953_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0204953_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0204953_22	UniRef90	UniRef90_A0A174BAS8	Phage minor capsid protein 2	NA
UHGV-0204953_22	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-0204953_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0204953_22	COG	COG2369	NA	NA
UHGV-0204953_22	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0204953_23	eggNOG-mapper	658655.HMPREF0988_02562	NA	NA
UHGV-0204953_24	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0204953_24	UniRef90	UniRef90_UPI000CFA6BAA	NA	NA
UHGV-0204953_24	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0204953_24	Pfam	PF14359	NA	DUF4406
UHGV-0204953_24	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0204953_25	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0204953_25	UniRef90	UniRef90_A5KPA4	Phage minor structural protein GP20	NA
UHGV-0204953_25	eggNOG-mapper	658655.HMPREF0988_02561	Phage minor structural protein GP20	NA
UHGV-0204953_25	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0204953_25	Structural annotation	PF06810	NA	NA
UHGV-0204953_26	PHROG	phrog_422	major head protein	head and packaging
UHGV-0204953_26	eggNOG-mapper	411470.RUMGNA_02219	NA	NA
UHGV-0204953_26	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0204953_27	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0204953_27	eggNOG-mapper	411462.DORLON_00785	NA	NA
UHGV-0204953_28	PHROG	phrog_3366	NA	unknown function
UHGV-0204953_28	eggNOG-mapper	742723.HMPREF9477_00903	NA	NA
UHGV-0204953_28	Pfam	PF20536	NA	DUF6751
UHGV-0204953_28	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0204953_29	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0204953_29	UniRef90	UniRef90_A0A174B7G8	Minor capsid protein	NA
UHGV-0204953_29	eggNOG-mapper	742723.HMPREF9477_00902	Minor capsid protein	NA
UHGV-0204953_29	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0204953_29	Structural annotation	PF11114	NA	NA
UHGV-0204953_30	PHROG	phrog_3266	tail completion	connector
UHGV-0204953_30	UniRef90	UniRef90_UPI0011DD0321	chloramphenicol resistance protein	NA
UHGV-0204953_30	eggNOG-mapper	742723.HMPREF9477_00901	NA	NA
UHGV-0204953_30	Structural annotation	PF12691	NA	NA
UHGV-0204953_31	eggNOG-mapper	742723.HMPREF9477_00900	NA	NA
UHGV-0204953_32	PHROG	phrog_3099	NA	unknown function
UHGV-0204953_32	eggNOG-mapper	742723.HMPREF9477_00900	NA	NA
UHGV-0204953_33	PHROG	phrog_4450	NA	unknown function
UHGV-0204953_33	eggNOG-mapper	1280692.AUJL01000004_gene838	NA	NA
UHGV-0204953_33	Pfam	PF20378	NA	DUF6673
UHGV-0204953_33	Structural annotation	PF20378	NA	NA
UHGV-0204953_34	PHROG	phrog_706	NA	unknown function
UHGV-0204953_34	UniRef90	UniRef90_A0A174B750	Bacteriophage Gp15 protein	NA
UHGV-0204953_34	eggNOG-mapper	411460.RUMTOR_02091	COG NOG24969 non supervised orthologous group	NA
UHGV-0204953_34	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0204953_34	Structural annotation	PF06854	NA	NA
UHGV-0204953_35	PHROG	phrog_5218	NA	unknown function
UHGV-0204953_35	UniRef90	UniRef90_A5KPB0	Phage tail tape measure protein, TP901 family	NA
UHGV-0204953_35	eggNOG-mapper	411460.RUMTOR_02094	Phage-related minor tail protein	NA
UHGV-0204953_35	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0204953_35	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0204953_35	COG	COG4487	NA	NA
UHGV-0204953_35	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0204953_36	UniRef90	UniRef90_UPI001F242491	phage tail family protein	NA
UHGV-0204953_36	eggNOG-mapper	411460.RUMTOR_02095	NA	NA
UHGV-0204953_36	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0204953_37	PHROG	phrog_538	minor tail protein	tail
UHGV-0204953_37	UniRef90	UniRef90_UPI001F3E20C1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0204953_37	eggNOG-mapper	411460.RUMTOR_02096	NA	NA
UHGV-0204953_37	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0204953_37	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0204953_38	PHROG	phrog_13141	NA	unknown function
UHGV-0204953_38	UniRef90	UniRef90_A0A6L8RVX5	H_lectin domain-containing protein	NA
UHGV-0204953_38	eggNOG-mapper	411460.RUMTOR_02097	NA	NA
UHGV-0204953_38	Structural annotation	PF20747, PF17900	NA	NA
UHGV-0204953_39	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-0204953_39	PHROG	phrog_30034	NA	unknown function
UHGV-0204953_39	UniRef90	UniRef90_A5KPB5	Carbohydrate binding domain protein	NA
UHGV-0204953_39	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0204953_39	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0204953_39	Structural annotation	PF10618	NA	NA
UHGV-0204953_40	PHROG	phrog_199	holin	lysis
UHGV-0204953_40	UniRef90	UniRef90_A5KPB6	Toxin secretion/phage lysis holin	NA
UHGV-0204953_40	eggNOG-mapper	411460.RUMTOR_02100	NA	NA
UHGV-0204953_40	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0204953_40	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0204953_40	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0204953_41	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0204953_41	PHROG	phrog_833	endolysin	lysis
UHGV-0204953_41	UniRef90	UniRef90_F3AXQ7	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0204953_41	eggNOG-mapper	665950.HMPREF1025_02511	Ami_2	NA
UHGV-0204953_41	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0204953_41	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0204953_41	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0204953_42	KOfam	K14059	int; integrase	NA
UHGV-0204953_42	PHROG	phrog_1	integrase	integration and excision
UHGV-0204953_42	UniRef90	UniRef90_A0A355NK33	Site-specific integrase	NA
UHGV-0204953_42	eggNOG-mapper	1304866.K413DRAFT_1180	Belongs to the 'phage' integrase family	NA
UHGV-0204953_42	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0204953_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0204953_42	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0204953_42	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0204953_44	PHROG	phrog_87	metallo-protease	other
UHGV-0204953_44	UniRef90	UniRef90_A5KP71	Putative toxin-antitoxin system, toxin component	NA
UHGV-0204953_44	eggNOG-mapper	411460.RUMTOR_02055	IrrE N-terminal-like domain	NA
UHGV-0204953_44	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0204953_44	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0204953_44	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0204953_45	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0204953_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0204953_45	UniRef90	UniRef90_A5KP72	DNA-binding helix-turn-helix protein	NA
UHGV-0204953_45	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0204953_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0204953_45	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0204953_45	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0204953	Yes	32,953 bps	44.01%	100.00%	0.9789
UHGV-1950561	No	33,961 bps	44.02%	88.79%	0.9783
UHGV-2230616	No	30,509 bps	44.61%	79.89%	0.9817
UHGV-0144759	No	30,085 bps	43.61%	79.02%	0.9771
UHGV-2019572	No	10,936 bps	45.07%	26.50%	0.9830