vOTU-047876

Overview

vOTU representative UHGV-0205032

No. of genomes 4

Genome length 62,081 bps

Completeness 100.00% (complete)

Host Bifidobacterium

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-047876
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00024 › vSUBFAM-00138 › vGENUS-00439 › vSUBGEN-04024 › vOTU-047876
Host taxonomy	Bacteria › Actinobacteriota › Actinomycetia › Actinomycetales › Bifidobacteriaceae › Bifidobacterium
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0205032
BioSample	SAMN11031380
Genome length	62,081 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	105
CDS density	88.62%
tRNA count	5
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0205032_1	Structural annotation	TIGR00739	NA	NA
UHGV-0205032_2	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0205032_2	UniRef90	UniRef90_A0A2N0T1Z7	Recombination protein-phage associated	NA
UHGV-0205032_2	Pfam	PF04404	ERF superfamily	ERF
UHGV-0205032_2	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0205032_3	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0205032_3	UniRef90	UniRef90_A0A4S5BDN2	NA	NA
UHGV-0205032_3	eggNOG-mapper	1687.BCOR_0988	NA	NA
UHGV-0205032_3	Pfam	PF12684	NA	DUF3799
UHGV-0205032_3	Structural annotation	PF12684, MF_03030, TIGR01896, COG5377	NA	NA
UHGV-0205032_4	UniRef90	UniRef90_UPI0018DBBA64	DivIVA domain-containing protein	NA
UHGV-0205032_4	eggNOG-mapper	218140.BPSY_1969	DivIVA protein	NA
UHGV-0205032_4	NCBIFam	TIGR03544.1	DivIVA domain-containing protein	NA
UHGV-0205032_4	COG	COG1566	Multidrug resistance efflux pump EmrA	NA
UHGV-0205032_4	Structural annotation	MF_02011	NA	NA
UHGV-0205032_6	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0205032_11	UniRef90	UniRef90_A0A1D7UNJ5	HTH cro/C1-type domain-containing protein	NA
UHGV-0205032_12	UniRef90	UniRef90_A0A318MGY9	HTH cro/C1-type domain-containing protein	NA
UHGV-0205032_13	PHROG	phrog_18347	NA	unknown function
UHGV-0205032_13	eggNOG-mapper	1122994.AUFR01000001_gene1372	Excalibur domain protein	NA
UHGV-0205032_13	Pfam	PF05901	Excalibur calcium-binding domain	Excalibur
UHGV-0205032_13	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0205032_15	KOfam	K14059	int; integrase	NA
UHGV-0205032_15	PHROG	phrog_1	integrase	integration and excision
UHGV-0205032_15	UniRef90	UniRef90_A0A1D7UNI8	Putative phage integrase family protein	NA
UHGV-0205032_15	eggNOG-mapper	1437603.BMON_0921	Phage integrase family	NA
UHGV-0205032_15	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0205032_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0205032_15	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0205032_15	Structural annotation	PF00589, PF13102, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-0205032_16	eggNOG-mapper	1692.BMAGN_1470	NA	NA
UHGV-0205032_18	UniRef90	UniRef90_A0A229W0U2	DoxX	NA
UHGV-0205032_18	eggNOG-mapper	1341695.BBOMB_1024	NA	NA
UHGV-0205032_19	KOfam	K07273	acm; lysozyme	NA
UHGV-0205032_19	PHROG	phrog_291	endolysin	lysis
UHGV-0205032_19	UniRef90	UniRef90_A0A087BFF2	Glycosyl hydrolase family 25	NA
UHGV-0205032_19	eggNOG-mapper	78345.BMERY_0862	Glycosyl hydrolases family 25	NA
UHGV-0205032_19	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0205032_19	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0205032_19	Structural annotation	PF01183, NF007404, COG3757, COG1388	NA	NA
UHGV-0205032_21	Structural annotation	PF16990, NF033675	NA	NA
UHGV-0205032_22	Structural annotation	PF01105, NF033675	NA	NA
UHGV-0205032_23	Structural annotation	PF03422, MF_01372, NF033675, COG5156	NA	NA
UHGV-0205032_25	eggNOG-mapper	78346.BRUM_0384	NA	NA
UHGV-0205032_26	PHROG	phrog_1157	transposase	integration and excision
UHGV-0205032_26	UniRef90	UniRef90_A0A087ACK7	Transposase	NA
UHGV-0205032_26	eggNOG-mapper	326426.Bbr_0152	PFAM Integrase catalytic	NA
UHGV-0205032_26	COG	COG4584	Transposase	NA
UHGV-0205032_29	KOfam	K07164	NA	NA
UHGV-0205032_29	PHROG	phrog_13518	NA	unknown function
UHGV-0205032_29	UniRef90	UniRef90_A0A0L7B609	Fibronectin type-III domain-containing protein	NA
UHGV-0205032_29	eggNOG-mapper	78346.BRUM_0385	cellulase activity	NA
UHGV-0205032_29	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0205032_29	COG	COG4372	NA	NA
UHGV-0205032_29	Structural annotation	PF14594, PF21605, PF16323, NF033848, COG3500, COG3401	NA	NA
UHGV-0205032_30	Structural annotation	PF20195, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0205032_31	PHROG	phrog_305	tail length tape measure protein	tail
UHGV-0205032_31	UniRef90	UniRef90_W6EWI6	Tail measure	NA
UHGV-0205032_31	eggNOG-mapper	35760.BCHO_0831	domain protein	NA
UHGV-0205032_31	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-0205032_33	PHROG	phrog_36579	NA	unknown function
UHGV-0205032_34	PHROG	phrog_117	major tail protein	tail
UHGV-0205032_34	UniRef90	UniRef90_A0A087B693	Putative phage protein gp19	NA
UHGV-0205032_34	eggNOG-mapper	1692.BMAGN_1451	NA	NA
UHGV-0205032_34	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0205032_35	Structural annotation	PF12691	NA	NA
UHGV-0205032_36	PHROG	phrog_32608	NA	unknown function
UHGV-0205032_36	Structural annotation	PF17395	NA	NA
UHGV-0205032_37	PHROG	phrog_25853	NA	unknown function
UHGV-0205032_37	UniRef90	UniRef90_A0A0A7I3R4	Thiamine biosynthesis protein ThiS	NA
UHGV-0205032_37	eggNOG-mapper	1692.BMAGN_1448	NA	NA
UHGV-0205032_37	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0205032_38	PHROG	phrog_36776	NA	unknown function
UHGV-0205032_38	eggNOG-mapper	1692.BMAGN_1447	NA	NA
UHGV-0205032_39	PHROG	phrog_29	major head protein	head and packaging
UHGV-0205032_39	UniRef90	UniRef90_UPI001BDD8097	major capsid protein	NA
UHGV-0205032_39	eggNOG-mapper	1692.BMAGN_1446	Phage major capsid protein E	NA
UHGV-0205032_39	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0205032_39	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0205032_40	PHROG	phrog_3583	head decoration	head and packaging
UHGV-0205032_40	UniRef90	UniRef90_A0A087B687	Bacteriophage lambda head decoration like-protein	NA
UHGV-0205032_40	eggNOG-mapper	1692.BMAGN_1445	NA	NA
UHGV-0205032_41	eggNOG-mapper	35760.BCHO_0841	NA	NA
UHGV-0205032_42	PHROG	phrog_36668	NA	unknown function
UHGV-0205032_42	UniRef90	UniRef90_W6EWN9	NA	NA
UHGV-0205032_42	eggNOG-mapper	1692.BMAGN_1443	NA	NA
UHGV-0205032_42	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0205032_43	PHROG	phrog_104	portal protein	head and packaging
UHGV-0205032_43	UniRef90	UniRef90_A0A1X2Z7Y5	Portal protein	NA
UHGV-0205032_43	eggNOG-mapper	1692.BMAGN_1442	NA	NA
UHGV-0205032_43	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0205032_43	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0205032_44	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0205032_44	UniRef90	UniRef90_A0A7Y0HWA7	NA	NA
UHGV-0205032_44	eggNOG-mapper	1692.BMAGN_1441	Terminase	NA
UHGV-0205032_44	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0205032_44	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0205032_45	PHROG	phrog_226	minor tail protein	tail
UHGV-0205032_45	UniRef90	UniRef90_A0A087B682	Putative phage protein gp1	NA
UHGV-0205032_46	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0205032_46	Structural annotation	PF01844, PF09889, MF_00649	NA	NA
UHGV-0205032_47	PHROG	phrog_333	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0205032_47	UniRef90	UniRef90_B7GS45	HNH endonuclease	NA
UHGV-0205032_47	eggNOG-mapper	1692.BMAGN_1438	HNH endonuclease	NA
UHGV-0205032_47	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0205032_50	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0205032_50	UniRef90	UniRef90_A0A7L9UK22	Helix-turn-helix transcriptional regulator	NA
UHGV-0205032_50	eggNOG-mapper	762211.BSTEL_0947	Helix-turn-helix domain	NA
UHGV-0205032_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0205032_50	Structural annotation	PF13443, NF041951, COG1476	NA	NA
UHGV-0205032_51	eggNOG-mapper	78344.BIGA_1553	NA	NA
UHGV-0205032_51	AcrCatalog	cluster_30544	NA	NA
UHGV-0205032_52	UniRef90	UniRef90_UPI001BDDB304	toxin-antitoxin system antitoxin subunit	NA
UHGV-0205032_52	eggNOG-mapper	1437610.BREU_1783	NA	NA
UHGV-0205032_53	PHROG	phrog_19904	NA	unknown function
UHGV-0205032_64	KOfam	K07473	dinJ; DNA-damage-inducible protein J	NA
UHGV-0205032_64	PHROG	phrog_2737	NA	unknown function
UHGV-0205032_64	UniRef90	UniRef90_A0A5M9ZK91	Type II toxin-antitoxin system antitoxin, RelB/DinJ family	NA
UHGV-0205032_64	eggNOG-mapper	762211.BSTEL_0269	RelB antitoxin	NA
UHGV-0205032_64	Pfam	PF04221	RelB antitoxin	RelB
UHGV-0205032_64	NCBIFam	TIGR02384.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-0205032_64	COG	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	NA
UHGV-0205032_65	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0205032_65	UniRef90	UniRef90_A0A0L7B5Y1	Growth inhibitor PemK	NA
UHGV-0205032_65	eggNOG-mapper	762211.BSTEL_0268	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0205032_65	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0205032_65	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0205032_69	UniRef90	UniRef90_A0A4R0V5Q9	Magnesium chelatase subunit ChlI-like ATPase	NA
UHGV-0205032_70	PHROG	phrog_5978	NA	unknown function
UHGV-0205032_70	UniRef90	UniRef90_A0A0L7B661	Cell filamentation protein Fic	NA
UHGV-0205032_70	eggNOG-mapper	1690.BPSG_1178	Fic/DOC family	NA
UHGV-0205032_70	Pfam	PF13784	Fic/DOC family N-terminal	Fic_N
UHGV-0205032_70	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0205032_70	COG	COG3177	Fic family protein	NA
UHGV-0205032_70	Structural annotation	PF02661, PF13784, PF21248, MF_01819, NF040876, COG3177	NA	NA
UHGV-0205032_75	PHROG	phrog_17662	NA	unknown function
UHGV-0205032_75	UniRef90	UniRef90_A0A1X2ZJJ5	Radical SAM domain-containing protein	NA
UHGV-0205032_75	eggNOG-mapper	642492.Clole_0962	NA	NA
UHGV-0205032_75	Structural annotation	MF_03128, TIGR02495, COG2896	NA	NA
UHGV-0205032_78	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0205032_78	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0205032_78	UniRef90	UniRef90_A0A1D7UNM8	Prophage antirepressor	NA
UHGV-0205032_78	eggNOG-mapper	702459.BBPR_0883	BRO family, N-terminal domain	NA
UHGV-0205032_78	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0205032_78	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0205032_78	COG	COG3617	Prophage antirepressor	NA
UHGV-0205032_78	Structural annotation	PF03374, PF02498, COG3645, COG3617	NA	NA
UHGV-0205032_79	PHROG	phrog_908	NA	unknown function
UHGV-0205032_79	eggNOG-mapper	1688.BCUN_0617	NA	NA
UHGV-0205032_79	Structural annotation	TIGR02043	NA	NA
UHGV-0205032_80	eggNOG-mapper	1437605.BACT_1092	NA	NA
UHGV-0205032_81	PHROG	phrog_2447	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0205032_81	eggNOG-mapper	1394176.AWUO01000014_gene675	NA	NA
UHGV-0205032_81	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0205032_83	PHROG	phrog_2089	NA	unknown function
UHGV-0205032_83	UniRef90	UniRef90_A0A1V8RER5	NA	NA
UHGV-0205032_86	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0205032_86	UniRef90	UniRef90_G1FMW8	Holliday junction resolvase	NA
UHGV-0205032_86	eggNOG-mapper	1203568.HMPREF1484_00227	NA	NA
UHGV-0205032_86	Structural annotation	PF13588, COG1591	NA	NA
UHGV-0205032_89	Structural annotation	PF17259, COG4095	NA	NA
UHGV-0205032_90	KOfam	K18955	whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator	NA
UHGV-0205032_90	PHROG	phrog_1333	NA	unknown function
UHGV-0205032_90	UniRef90	UniRef90_A0A374SRW4	WhiB family transcriptional regulator	NA
UHGV-0205032_90	eggNOG-mapper	1089546.AQUI01000001_gene38	Transcription factor WhiB	NA
UHGV-0205032_90	Pfam	PF02467	Transcription factor WhiB	Whib
UHGV-0205032_90	Structural annotation	PF02467, MF_01479	NA	NA
UHGV-0205032_91	Structural annotation	PF11180, TIGR04550, COG4226	NA	NA
UHGV-0205032_96	PHROG	phrog_17296	NA	unknown function
UHGV-0205032_96	UniRef90	UniRef90_A0A516KTZ2	ADP-ribosyltransferase	NA
UHGV-0205032_96	eggNOG-mapper	1680.BADO_1261	NA	NA
UHGV-0205032_96	Structural annotation	PF12120, NF033144	NA	NA
UHGV-0205032_99	PHROG	phrog_3972	NA	unknown function
UHGV-0205032_99	UniRef90	UniRef90_W6EWQ1	NA	NA
UHGV-0205032_99	eggNOG-mapper	1158612.I580_01895	NA	NA
UHGV-0205032_99	dbAPIS	APIS035	Broad-spectrum counter-defense.	NA
UHGV-0205032_101	PHROG	phrog_31208	NA	unknown function
UHGV-0205032_101	AcrCatalog	cluster_17067	NA	NA
UHGV-0205032_102	Structural annotation	TIGR00739, COG1862	NA	NA
UHGV-0205032_104	PHROG	phrog_14515	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0205032_104	UniRef90	UniRef90_A0A5M9ZI68	C2H2-type domain-containing protein	NA
UHGV-0205032_104	eggNOG-mapper	1437603.BMON_1161	HNH endonuclease	NA
UHGV-0205032_104	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0205032_105	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0205032_105	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0205032_105	UniRef90	UniRef90_B7GS06	Single-stranded DNA-binding protein	NA
UHGV-0205032_105	eggNOG-mapper	472175.EL18_01208	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0205032_105	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0205032_105	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0205032_105	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0205032_105	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0205032	Yes	62,081 bps	57.10%	100.00%	0.9780
UHGV-1400364	No	38,044 bps	57.78%	61.27%	0.9777
UHGV-0138498	No	38,019 bps	57.78%	61.23%	0.9785
UHGV-1452387	No	38,019 bps	57.78%	61.23%	0.9787