vOTU-047919

Overview

vOTU representative UHGV-0205280

No. of genomes 5

Genome length 42,498 bps

Completeness 100.00% (complete)

Host Clostridia

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-047919
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 › vSUBFAM-04436 › vGENUS-07421 › vSUBGEN-05554 › vOTU-047919
Host taxonomy	Bacteria › Firmicutes A › Clostridia
Host range breadth	Class
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0205280
BioSample	SAMN11031435
Genome length	42,498 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	56
CDS density	90.63%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0205280_1	PHROG	phrog_2115	tail protein	tail
UHGV-0205280_1	UniRef90	UniRef90_UPI000BA73733	segregation and condensation protein B	NA
UHGV-0205280_1	eggNOG-mapper	1347392.CCEZ01000005_gene1242	NA	NA
UHGV-0205280_1	Structural annotation	PF11836	NA	NA
UHGV-0205280_2	PHROG	phrog_7423	NA	unknown function
UHGV-0205280_2	UniRef90	UniRef90_UPI0008A1BA71	phenylalanine racemase	NA
UHGV-0205280_2	eggNOG-mapper	1347392.CCEZ01000005_gene1243	NA	NA
UHGV-0205280_3	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0205280_3	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0205280_3	UniRef90	UniRef90_A0A6N3FCF7	Murein hydrolase activator EnvC	NA
UHGV-0205280_3	eggNOG-mapper	903814.ELI_3197	Phage tail tape measure protein, TP901 family	NA
UHGV-0205280_3	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0205280_3	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0205280_3	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0205280_3	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0205280_3	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0205280_4	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0205280_4	UniRef90	UniRef90_A0A1I5G9L6	Putative phage tail component, N-terminal domain-containing protein	NA
UHGV-0205280_4	eggNOG-mapper	1215915.BN193_09050	tail component protein Orf17 of Streptococcus thermophilus bacteriophage DT1	NA
UHGV-0205280_4	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0205280_4	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0205280_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-0205280_4	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0205280_5	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0205280_5	UniRef90	UniRef90_A0A1I5G9N3	Phage minor structural protein, N-terminal region	NA
UHGV-0205280_5	eggNOG-mapper	306323.Q56S86_9CAUD	peptidoglycan catabolic process	NA
UHGV-0205280_5	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0205280_5	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0205280_6	PHROG	phrog_24267	NA	unknown function
UHGV-0205280_6	UniRef90	UniRef90_A0A1I5GAN2	PKD domain-containing protein	NA
UHGV-0205280_6	eggNOG-mapper	1123302.KB904167_gene530	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0205280_6	COG	COG4675	Phage tail collar domain	NA
UHGV-0205280_6	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0205280_8	PHROG	phrog_1382	NA	unknown function
UHGV-0205280_8	eggNOG-mapper	1158610.UC3_02335	NA	NA
UHGV-0205280_8	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0205280_8	Structural annotation	NF040910	NA	NA
UHGV-0205280_9	PHROG	phrog_1382	NA	unknown function
UHGV-0205280_9	eggNOG-mapper	411902.CLOBOL_00118	NA	NA
UHGV-0205280_9	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0205280_9	Structural annotation	NF040910	NA	NA
UHGV-0205280_11	PHROG	phrog_4105	NA	unknown function
UHGV-0205280_12	PHROG	phrog_263	holin	lysis
UHGV-0205280_12	UniRef90	UniRef90_A0A1I5GA49	Holin, SPP1 family	NA
UHGV-0205280_12	eggNOG-mapper	272623.L16574	SPP1 phage holin	NA
UHGV-0205280_12	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0205280_13	KOfam	K07273	acm; lysozyme	NA
UHGV-0205280_13	PHROG	phrog_291	endolysin	lysis
UHGV-0205280_13	UniRef90	UniRef90_A0A6N3FBU5	Autolytic lysozyme	NA
UHGV-0205280_13	eggNOG-mapper	1280682.AUKA01000003_gene1374	Glycosyl hydrolases family 25	NA
UHGV-0205280_13	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0205280_13	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0205280_13	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0205280_13	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0205280_14	PHROG	phrog_37131	NA	unknown function
UHGV-0205280_14	UniRef90	UniRef90_A0A1I5G9V2	RNase LS, toxin	NA
UHGV-0205280_14	eggNOG-mapper	1122947.FR7_2517	RNase LS, bacterial toxin	NA
UHGV-0205280_14	Pfam	PF19417	RNase LS, bacterial toxin N-terminal	RnlA_toxin_N
UHGV-0205280_14	Pfam	PF15935	RNase LS, bacterial toxin	RnlA_toxin
UHGV-0205280_14	Pfam	PF19034	RNase LS, bacterial toxin DBD domain	RnlA-toxin_DBD
UHGV-0205280_15	PHROG	phrog_22343	NA	unknown function
UHGV-0205280_15	UniRef90	UniRef90_A0A1I5G9X1	Antitoxin to toxin RNase LS or RnlA	NA
UHGV-0205280_15	eggNOG-mapper	1122947.FR7_2518	Antitoxin to bacterial toxin RNase LS or RnlA	NA
UHGV-0205280_15	Pfam	PF15933	Antitoxin to bacterial toxin RNase LS or RnlA	RnlB_antitoxin
UHGV-0205280_17	KOfam	K14059	int; integrase	NA
UHGV-0205280_17	PHROG	phrog_1	integrase	integration and excision
UHGV-0205280_17	UniRef90	UniRef90_A0A6N3FFQ2	Tyrosine recombinase XerD	NA
UHGV-0205280_17	eggNOG-mapper	931626.Awo_c31360	Phage integrase family	NA
UHGV-0205280_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0205280_17	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0205280_17	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0205280_18	PHROG	phrog_7115	NA	unknown function
UHGV-0205280_18	UniRef90	UniRef90_A0A6N3FG34	bPH_1 domain-containing protein	NA
UHGV-0205280_18	eggNOG-mapper	1121344.JHZO01000003_gene733	Bacterial PH domain	NA
UHGV-0205280_18	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0205280_18	Structural annotation	PF08000, COG3402	NA	NA
UHGV-0205280_19	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0205280_19	UniRef90	UniRef90_A0A317RYN7	Host cell surface-exposed lipoprotein	NA
UHGV-0205280_19	eggNOG-mapper	742818.HMPREF9451_01281	Host cell surface-exposed lipoprotein	NA
UHGV-0205280_19	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0205280_19	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0205280_19	Structural annotation	PF07553, MF_01114, NF001062, COG2137	NA	NA
UHGV-0205280_20	PHROG	phrog_1914	NA	unknown function
UHGV-0205280_20	UniRef90	UniRef90_A0A1I5G6F7	Peptidase_M78 domain-containing protein	NA
UHGV-0205280_20	eggNOG-mapper	642492.Clole_0781	NA	NA
UHGV-0205280_20	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0205280_20	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0205280_20	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0205280_21	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0205280_21	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0205280_21	UniRef90	UniRef90_A0A6N3FFJ9	HTH-type transcriptional regulator Xre	NA
UHGV-0205280_21	eggNOG-mapper	642492.Clole_0782	addiction module antidote protein HigA	NA
UHGV-0205280_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0205280_21	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0205280_21	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0205280_22	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0205280_22	UniRef90	UniRef90_A0A1I5G6W9	Helix-turn-helix domain-containing protein	NA
UHGV-0205280_22	eggNOG-mapper	411460.RUMTOR_02057	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0205280_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0205280_22	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0205280_23	PHROG	phrog_6058	NA	unknown function
UHGV-0205280_23	eggNOG-mapper	1462527.CCDM010000010_gene482	NA	NA
UHGV-0205280_29	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0205280_29	UniRef90	UniRef90_A0A415Z5D9	ATP-binding protein	NA
UHGV-0205280_29	eggNOG-mapper	1415774.U728_1119	AAA domain	NA
UHGV-0205280_29	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0205280_30	PHROG	phrog_18107	NA	unknown function
UHGV-0205280_30	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0205280_30	Structural annotation	PF05037	NA	NA
UHGV-0205280_31	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0205280_31	UniRef90	UniRef90_A0A6N7WRS1	ERCC4 domain-containing protein	NA
UHGV-0205280_31	eggNOG-mapper	903814.ELI_1275	NA	NA
UHGV-0205280_31	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0205280_32	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0205280_32	PHROG	phrog_11992	NA	unknown function
UHGV-0205280_32	UniRef90	UniRef90_A0A1E7S564	DNA primase	NA
UHGV-0205280_32	eggNOG-mapper	903814.ELI_1276	DNA primase activity	NA
UHGV-0205280_32	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0205280_32	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0205280_32	Structural annotation	PF01807, PF15188	NA	NA
UHGV-0205280_33	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0205280_33	UniRef90	UniRef90_A0A853JT53	NA	NA
UHGV-0205280_33	eggNOG-mapper	903814.ELI_1277	NA	NA
UHGV-0205280_33	Pfam	PF06048	NA	DUF927
UHGV-0205280_33	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0205280_33	COG	COG5519	NA	NA
UHGV-0205280_33	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0205280_35	UniRef90	UniRef90_UPI001D06A5C4	helix-turn-helix transcriptional regulator	NA
UHGV-0205280_37	PHROG	phrog_11237	NA	unknown function
UHGV-0205280_37	eggNOG-mapper	1235798.C817_02584	NA	NA
UHGV-0205280_38	PHROG	phrog_27905	NA	unknown function
UHGV-0205280_38	UniRef90	UniRef90_A0A1I5G7R0	NA	NA
UHGV-0205280_38	eggNOG-mapper	428125.CLOLEP_02888	NA	NA
UHGV-0205280_38	Pfam	PF14280	NA	DUF4365
UHGV-0205280_38	Structural annotation	PF14280, MF_01490, NF011271	NA	NA
UHGV-0205280_39	PHROG	phrog_27927	NA	unknown function
UHGV-0205280_39	eggNOG-mapper	756499.Desde_1388	NA	NA
UHGV-0205280_39	Structural annotation	PF01336, NF040991, COG2965	NA	NA
UHGV-0205280_40	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0205280_40	UniRef90	UniRef90_A0A6N3FE76	HTH cro/C1-type domain-containing protein	NA
UHGV-0205280_40	eggNOG-mapper	1304866.K413DRAFT_0788	Helix-turn-helix XRE-family like proteins	NA
UHGV-0205280_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0205280_40	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0205280_42	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0205280_42	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0205280_42	UniRef90	UniRef90_A0A1I5G7W6	Phage terminase small subunit	NA
UHGV-0205280_42	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-0205280_42	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0205280_42	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0205280_42	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0205280_43	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0205280_43	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0205280_43	UniRef90	UniRef90_A0A853JU79	PBSX family phage terminase large subunit	NA
UHGV-0205280_43	eggNOG-mapper	1430331.EP10_10340	Phage terminase, large subunit	NA
UHGV-0205280_43	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0205280_43	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0205280_43	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0205280_43	COG	COG1783	Phage terminase large subunit	NA
UHGV-0205280_43	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0205280_44	PHROG	phrog_64	portal protein	head and packaging
UHGV-0205280_44	UniRef90	UniRef90_A0A1I5G7R1	Phage portal protein, SPP1 family	NA
UHGV-0205280_44	eggNOG-mapper	1235792.C808_05332	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0205280_44	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0205280_44	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0205280_44	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0205280_45	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0205280_45	UniRef90	UniRef90_A0A1I5G813	Phage putative head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0205280_45	eggNOG-mapper	1235792.C808_05333	Phage Mu protein F like protein	NA
UHGV-0205280_45	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0205280_45	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0205280_45	COG	COG2369	NA	NA
UHGV-0205280_47	UniRef90	UniRef90_A0A1I5G9P9	NA	NA
UHGV-0205280_48	KOfam	K07584	NA	NA
UHGV-0205280_48	PHROG	phrog_4478	peptidase	other
UHGV-0205280_48	UniRef90	UniRef90_A0A853JS18	Ribosomal-processing cysteine protease Prp	NA
UHGV-0205280_48	eggNOG-mapper	411470.RUMGNA_03236	Cysteine protease Prp	NA
UHGV-0205280_48	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0205280_48	COG	COG2868	NA	NA
UHGV-0205280_48	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0205280_49	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0205280_49	UniRef90	UniRef90_A0A7G5MR59	NA	NA
UHGV-0205280_49	eggNOG-mapper	1235792.C808_05338	NA	NA
UHGV-0205280_49	Pfam	PF14265	NA	DUF4355
UHGV-0205280_49	Structural annotation	PF14265	NA	NA
UHGV-0205280_50	PHROG	phrog_544	major head protein	head and packaging
UHGV-0205280_50	UniRef90	UniRef90_R9C6R9	NA	NA
UHGV-0205280_50	eggNOG-mapper	476272.RUMHYD_02854	NA	NA
UHGV-0205280_50	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0205280_51	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0205280_51	UniRef90	UniRef90_A0A1I5G9Z5	Phage gp6-like head-tail connector protein	NA
UHGV-0205280_51	eggNOG-mapper	936154.STP_1267	NA	NA
UHGV-0205280_51	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0205280_51	Structural annotation	PF05135	NA	NA
UHGV-0205280_52	eggNOG-mapper	1232430.CAVG010000113_gene1018	NA	NA
UHGV-0205280_52	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0205280_53	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0205280_53	UniRef90	UniRef90_UPI001D139A6E	HK97 gp10 family phage protein	NA
UHGV-0205280_53	eggNOG-mapper	1347392.CCEZ01000005_gene1239	NA	NA
UHGV-0205280_54	PHROG	phrog_176	tail terminator	connector
UHGV-0205280_54	UniRef90	UniRef90_C5WIA2	Antigen B	NA
UHGV-0205280_54	eggNOG-mapper	1347392.CCEZ01000005_gene1240	NA	NA
UHGV-0205280_54	Pfam	PF16807	NA	DUF5072
UHGV-0205280_54	Structural annotation	PF16807, COG5003	NA	NA
UHGV-0205280_55	PHROG	phrog_1407	major tail protein	tail
UHGV-0205280_55	UniRef90	UniRef90_A0A6N3FDB0	Phage major tail protein 2	NA
UHGV-0205280_55	eggNOG-mapper	936154.STP_1264	Phage tail tube protein	NA
UHGV-0205280_55	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0205280_55	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0205280_55	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0205280_55	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0205280_56	PHROG	phrog_16443	NA	unknown function
UHGV-0205280_56	eggNOG-mapper	935948.KE386495_gene1339	NA	NA
UHGV-0205280_56	AcrCatalog	cluster_1135	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0205280	Yes	42,498 bps	45.01%	100.00%	0.9601
UHGV-0140140	No	38,119 bps	45.90%	99.90%	0.9774
UHGV-1959697	No	36,826 bps	45.89%	97.58%	0.9647
UHGV-1787517	No	16,716 bps	48.49%	44.37%	0.9804
UHGV-0299729	No	10,484 bps	45.61%	28.06%	0.9812