vOTU-047925

Overview

vOTU representative UHGV-0205319

No. of genomes 2

Genome length 35,645 bps

Completeness 100.00% (complete)

Host Limivicinus

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-047925
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 › vSUBFAM-00317 › vGENUS-00274 › vSUBGEN-13196 › vOTU-047925
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Oscillospiraceae › Limivicinus
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0205319
BioSample	SAMN11252253
Genome length	35,645 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	54
CDS density	91.50%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0205319_2	Structural annotation	NF010256	NA	NA
UHGV-0205319_6	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0205319_6	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0205319_7	KOfam	K14059	int; integrase	NA
UHGV-0205319_7	PHROG	phrog_1	integrase	integration and excision
UHGV-0205319_7	UniRef90	UniRef90_UPI00137B35AA	site-specific integrase	NA
UHGV-0205319_7	eggNOG-mapper	1297617.JPJD01000022_gene1664	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0205319_7	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0205319_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0205319_7	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0205319_7	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0205319_8	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0205319_8	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0205319_8	UniRef90	UniRef90_A0A810Q7W6	HicB family protein	NA
UHGV-0205319_8	eggNOG-mapper	641112.ACOK01000116_gene2617	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0205319_8	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0205319_8	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0205319_8	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0205319_9	eggNOG-mapper	742741.HMPREF9475_00398	NA	NA
UHGV-0205319_10	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0205319_10	Structural annotation	PF13443, MF_00535, NF041951, COG3655	NA	NA
UHGV-0205319_11	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0205319_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0205319_11	UniRef90	UniRef90_UPI000D1E8240	helix-turn-helix domain-containing protein	NA
UHGV-0205319_11	eggNOG-mapper	1443125.Z962_p0007	Helix-turn-helix XRE-family like proteins	NA
UHGV-0205319_11	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0205319_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0205319_11	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0205319_11	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0205319_13	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0205319_13	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0205319_13	UniRef90	UniRef90_UPI001BB47897	helix-turn-helix domain-containing protein	NA
UHGV-0205319_13	eggNOG-mapper	693746.OBV_27490	sequence-specific DNA binding	NA
UHGV-0205319_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0205319_13	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0205319_13	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0205319_14	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0205319_14	UniRef90	UniRef90_A0A3D4EJF0	XRE family transcriptional regulator	NA
UHGV-0205319_14	eggNOG-mapper	1415774.U728_1274	Helix-turn-helix XRE-family like proteins	NA
UHGV-0205319_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0205319_14	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0205319_14	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0205319_16	UniRef90	UniRef90_UPI001C5A4A62	helix-turn-helix domain-containing protein	NA
UHGV-0205319_16	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0205319_16	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0205319_16	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0205319_16	Structural annotation	PF12728, MF_01155, TIGR01764, COG3311	NA	NA
UHGV-0205319_17	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0205319_17	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0205319_19	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0205319_19	eggNOG-mapper	1235797.C816_01664	COG NOG12663 non supervised orthologous group	NA
UHGV-0205319_19	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0205319_20	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0205319_20	UniRef90	UniRef90_UPI001F3D92C2	helix-turn-helix domain-containing protein	NA
UHGV-0205319_20	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0205319_20	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0205319_20	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0205319_20	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-0205319_21	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0205319_21	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0205319_21	UniRef90	UniRef90_A0A3D1V9Y4	DNA helicase	NA
UHGV-0205319_21	eggNOG-mapper	663278.Ethha_2283	Participates in initiation and elongation during chromosome replication	NA
UHGV-0205319_21	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0205319_21	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0205319_21	COG	COG0305	Replicative DNA helicase	NA
UHGV-0205319_21	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0205319_22	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0205319_22	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0205319_22	UniRef90	UniRef90_A0A845R968	ParA family protein	NA
UHGV-0205319_22	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0205319_22	Pfam	PF13614	AAA domain	AAA_31
UHGV-0205319_22	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0205319_22	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0205319_23	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0205319_23	PHROG	phrog_27290	NA	unknown function
UHGV-0205319_23	UniRef90	UniRef90_UPI0003130F10	ParB N-terminal domain-containing protein	NA
UHGV-0205319_23	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-0205319_23	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0205319_23	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0205319_23	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0205319_25	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0205319_25	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0205319_25	UniRef90	UniRef90_A0A413FXK5	Methyltransferase	NA
UHGV-0205319_25	eggNOG-mapper	762982.HMPREF9442_01222	DNA methylase	NA
UHGV-0205319_25	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0205319_25	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0205319_25	COG	COG0863	DNA modification methylase	NA
UHGV-0205319_25	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0205319_26	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0205319_26	eggNOG-mapper	742738.HMPREF9460_00867	NA	NA
UHGV-0205319_26	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0205319_27	UniRef90	UniRef90_UPI001F232519	cysteine-rich KTR domain-containing protein	NA
UHGV-0205319_27	eggNOG-mapper	742738.HMPREF9460_00868	Cysteine-rich KTR	NA
UHGV-0205319_27	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0205319_27	Structural annotation	PF14205	NA	NA
UHGV-0205319_28	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0205319_28	UniRef90	UniRef90_A0A3D4EH89	HNH endonuclease	NA
UHGV-0205319_28	eggNOG-mapper	742738.HMPREF9460_00869	HNH endonuclease	NA
UHGV-0205319_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0205319_28	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0205319_29	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0205319_29	UniRef90	UniRef90_UPI000C77CC02	P27 family phage terminase small subunit	NA
UHGV-0205319_29	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0205319_29	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0205319_29	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0205319_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0205319_30	UniRef90	UniRef90_A0A3D4EH51	Terminase large subunit	NA
UHGV-0205319_30	eggNOG-mapper	693746.OBV_20000	Phage terminase-like protein large subunit	NA
UHGV-0205319_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0205319_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0205319_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0205319_30	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0205319_32	PHROG	phrog_12	portal protein	head and packaging
UHGV-0205319_32	UniRef90	UniRef90_A0A3D4EI33	Phage portal protein	NA
UHGV-0205319_32	eggNOG-mapper	1120971.AUCA01000066_gene593	Phage portal protein	NA
UHGV-0205319_32	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0205319_32	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0205319_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0205319_32	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0205319_33	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0205319_33	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0205319_33	UniRef90	UniRef90_A0A644ZMQ3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0205319_33	eggNOG-mapper	649639.Bcell_2731	Serine dehydrogenase proteinase	NA
UHGV-0205319_33	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0205319_33	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0205319_33	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0205319_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-0205319_34	UniRef90	UniRef90_UPI001BB4749F	phage major capsid protein	NA
UHGV-0205319_34	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0205319_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0205319_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0205319_34	Structural annotation	PF05065, PF14182, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0205319_35	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0205319_35	UniRef90	UniRef90_A0A8J6JAY9	Phage gp6-like head-tail connector protein	NA
UHGV-0205319_35	eggNOG-mapper	1403313.AXBR01000002_gene4324	Phage gp6-like head-tail connector protein	NA
UHGV-0205319_35	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0205319_35	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0205319_36	PHROG	phrog_25	head closure Hc1	connector
UHGV-0205319_36	UniRef90	UniRef90_A0A845R2W2	Head-tail adaptor protein	NA
UHGV-0205319_36	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0205319_36	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0205319_36	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0205319_37	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0205319_37	Structural annotation	PF05657	NA	NA
UHGV-0205319_38	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0205319_38	Structural annotation	TIGR01725	NA	NA
UHGV-0205319_39	PHROG	phrog_88	major tail protein	tail
UHGV-0205319_39	UniRef90	UniRef90_A0A658JYC3	Phage tail protein	NA
UHGV-0205319_39	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0205319_39	COG	COG5492	NA	NA
UHGV-0205319_39	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0205319_40	Structural annotation	PF11836	NA	NA
UHGV-0205319_41	PHROG	phrog_13338	NA	unknown function
UHGV-0205319_41	UniRef90	UniRef90_A0A1M6L1P7	Phage-related minor tail protein	NA
UHGV-0205319_41	eggNOG-mapper	1408415.JHXL01000001_gene400	phage tail tape measure protein	NA
UHGV-0205319_41	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0205319_41	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0205319_41	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0205319_42	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0205319_42	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-0205319_42	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0205319_42	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-0205319_43	PHROG	phrog_26795	NA	unknown function
UHGV-0205319_43	eggNOG-mapper	796940.HMPREF9628_00133	NA	NA
UHGV-0205319_43	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0205319_44	Structural annotation	PF18614, MF_00085, NF003076	NA	NA
UHGV-0205319_45	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0205319_46	PHROG	phrog_31538	NA	unknown function
UHGV-0205319_47	PHROG	phrog_13589	NA	unknown function
UHGV-0205319_47	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0205319_48	eggNOG-mapper	411460.RUMTOR_01324	NA	NA
UHGV-0205319_48	Structural annotation	PF21253, PF07210, NF038128, TIGR03000, COG2512	NA	NA
UHGV-0205319_50	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-0205319_50	PHROG	phrog_30034	NA	unknown function
UHGV-0205319_50	UniRef90	UniRef90_A0A2Y9CAD1	Carbohydrate binding domain-containing protein	NA
UHGV-0205319_50	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0205319_50	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0205319_52	PHROG	phrog_14030	NA	unknown function
UHGV-0205319_52	UniRef90	UniRef90_A0A173XSJ1	Autolytic lysozyme	NA
UHGV-0205319_52	eggNOG-mapper	1121115.AXVN01000051_gene809	NLP P60 protein	NA
UHGV-0205319_52	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0205319_52	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0205319_52	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0205319_52	Structural annotation	PF01471, PF05382, NF038080, NF033742, COG3409, COG0791	NA	NA
UHGV-0205319_53	PHROG	phrog_1863	NA	unknown function
UHGV-0205319_53	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0205319_54	PHROG	phrog_1129	holin	lysis
UHGV-0205319_54	UniRef90	UniRef90_R6H6W8	Putative holin	NA
UHGV-0205319_54	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0205319_54	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0205319_54	Structural annotation	PF06946	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0205319	Yes	35,645 bps	58.11%	100.00%	0.9751
UHGV-0184867	No	34,691 bps	58.01%	95.79%	0.9722