vOTU-047985

Overview

vOTU representative UHGV-0205717

No. of genomes 6

Genome length 29,354 bps

Completeness 100.00% (complete)

Host Clostridia

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-047985
Number of genomes	6
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00026 › vSUBFAM-04171 › vGENUS-19773 › vSUBGEN-38475 › vOTU-047985
Host taxonomy	Bacteria › Firmicutes A › Clostridia
Host range breadth	Class
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0205717
BioSample	SAMN00095269
Genome length	29,354 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	50
CDS density	92.86%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0205717_1	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0205717_1	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0205717_1	UniRef90	UniRef90_A0A396NX14	Endonuclease	NA
UHGV-0205717_1	eggNOG-mapper	411462.DORLON_00821	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0205717_1	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0205717_1	COG	COG4748	NA	NA
UHGV-0205717_1	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0205717_3	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0205717_3	PHROG	phrog_95	integrase	integration and excision
UHGV-0205717_3	UniRef90	UniRef90_A0A7X8ETH7	Recombinase family protein	NA
UHGV-0205717_3	eggNOG-mapper	1120998.AUFC01000013_gene2937	NA	NA
UHGV-0205717_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0205717_3	Pfam	PF07508	Recombinase	Recombinase
UHGV-0205717_3	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0205717_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0205717_3	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0205717_7	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0205717_8	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0205717_8	PHROG	phrog_435	endolysin	lysis
UHGV-0205717_8	UniRef90	UniRef90_R6QHB3	Cell wall hydrolase/autolysin	NA
UHGV-0205717_8	eggNOG-mapper	97138.C820_02438	Ami_3	NA
UHGV-0205717_8	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0205717_8	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0205717_8	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0205717_9	UniRef90	UniRef90_UPI001876E64F	phage holin	NA
UHGV-0205717_9	eggNOG-mapper	1408437.JNJN01000039_gene392	COG COG5546 Small integral membrane protein	NA
UHGV-0205717_9	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0205717_9	COG	COG5546	NA	NA
UHGV-0205717_11	eggNOG-mapper	97138.C820_00248	NA	NA
UHGV-0205717_13	Structural annotation	PF20787	NA	NA
UHGV-0205717_16	PHROG	phrog_521	tail protein	tail
UHGV-0205717_16	UniRef90	UniRef90_UPI001C107A4D	NA	NA
UHGV-0205717_16	eggNOG-mapper	1120998.AUFC01000013_gene2954	NA	NA
UHGV-0205717_16	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0205717_16	COG	COG3778	NA	NA
UHGV-0205717_16	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0205717_17	PHROG	phrog_6	baseplate protein	tail
UHGV-0205717_17	UniRef90	UniRef90_R6PWP6	Baseplate J family protein	NA
UHGV-0205717_17	eggNOG-mapper	469617.FUAG_01853	Baseplate J-like protein	NA
UHGV-0205717_17	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0205717_17	COG	COG3299	NA	NA
UHGV-0205717_17	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0205717_18	PHROG	phrog_120	baseplate protein	tail
UHGV-0205717_18	UniRef90	UniRef90_UPI001C11145A	NA	NA
UHGV-0205717_18	eggNOG-mapper	1120998.AUFC01000013_gene2952	NA	NA
UHGV-0205717_18	Pfam	PF10934	NA	DUF2634
UHGV-0205717_18	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0205717_18	Structural annotation	PF10934, MF_02010, NF010728, COG4381	NA	NA
UHGV-0205717_19	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0205717_19	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0205717_19	UniRef90	UniRef90_UPI00085BF623	phage antirepressor KilAC domain-containing protein	NA
UHGV-0205717_19	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-0205717_19	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0205717_19	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0205717_19	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0205717_21	PHROG	phrog_400	tail protein	tail
UHGV-0205717_21	UniRef90	UniRef90_A0A162J0F6	Terminase	NA
UHGV-0205717_21	eggNOG-mapper	97138.C820_00602	Late control gene D protein	NA
UHGV-0205717_21	COG	COG3500	NA	NA
UHGV-0205717_21	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0205717_22	PHROG	phrog_5184	NA	unknown function
UHGV-0205717_22	UniRef90	UniRef90_A0A6N7XM83	Phage portal protein	NA
UHGV-0205717_22	eggNOG-mapper	1203606.HMPREF1526_01349	LysM domain	NA
UHGV-0205717_22	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0205717_22	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0205717_23	PHROG	phrog_7972	NA	unknown function
UHGV-0205717_23	UniRef90	UniRef90_A0A1T4YDD5	TMP_3 domain-containing protein	NA
UHGV-0205717_23	eggNOG-mapper	632245.CLP_2908	phage tail tape measure protein	NA
UHGV-0205717_23	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0205717_23	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0205717_24	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0205717_24	UniRef90	UniRef90_UPI001875BA1A	phage portal protein	NA
UHGV-0205717_24	eggNOG-mapper	1095747.HMPREF1049_2003	NA	NA
UHGV-0205717_24	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-0205717_25	PHROG	phrog_365	tail protein	tail
UHGV-0205717_25	UniRef90	UniRef90_UPI001C101F78	phage tail tube protein	NA
UHGV-0205717_25	eggNOG-mapper	469617.FUAG_00843	Phage tail tube protein	NA
UHGV-0205717_25	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0205717_25	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0205717_26	PHROG	phrog_1480	tail sheath	tail
UHGV-0205717_26	UniRef90	UniRef90_R6Q6F2	Phage_sheath_1C domain-containing protein	NA
UHGV-0205717_26	eggNOG-mapper	1196322.A370_05711	Phage tail sheath C-terminal domain	NA
UHGV-0205717_26	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0205717_26	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0205717_27	PHROG	phrog_525	NA	unknown function
UHGV-0205717_27	Pfam	PF20765	NA	DUF6838
UHGV-0205717_27	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-0205717_28	UniRef90	UniRef90_UPI000983FF43	HK97 gp10 family phage protein	NA
UHGV-0205717_28	eggNOG-mapper	318464.IO99_13735	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0205717_28	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0205717_29	PHROG	phrog_25	head closure Hc1	connector
UHGV-0205717_29	UniRef90	UniRef90_R6Q6F7	Phage head-tail adaptor	NA
UHGV-0205717_29	eggNOG-mapper	293826.Amet_2417	Phage head-tail adaptor	NA
UHGV-0205717_29	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0205717_29	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0205717_29	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0205717_29	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0205717_30	UniRef90	UniRef90_A0A843HRZ6	Phage gp6-like head-tail connector protein	NA
UHGV-0205717_30	eggNOG-mapper	632245.CLP_2916	Phage gp6-like head-tail connector protein	NA
UHGV-0205717_30	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0205717_30	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0205717_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-0205717_31	UniRef90	UniRef90_UPI001877424D	phage major capsid protein	NA
UHGV-0205717_31	eggNOG-mapper	1414720.CBYM010000002_gene572	Phage major capsid protein, HK97 family	NA
UHGV-0205717_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0205717_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0205717_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0205717_31	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0205717_32	KOfam	K06904	NA	NA
UHGV-0205717_32	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0205717_32	UniRef90	UniRef90_UPI001C1087C6	HK97 family phage prohead protease	NA
UHGV-0205717_32	eggNOG-mapper	796940.HMPREF9628_00145	Caudovirus prohead serine protease	NA
UHGV-0205717_32	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0205717_32	COG	COG3740	Phage head maturation protease	NA
UHGV-0205717_32	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0205717_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-0205717_33	UniRef90	UniRef90_UPI001C0FDDEA	phage portal protein	NA
UHGV-0205717_33	eggNOG-mapper	397288.C806_00075	Portal protein	NA
UHGV-0205717_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0205717_33	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0205717_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0205717_33	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0205717_34	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0205717_34	UniRef90	UniRef90_R6QAA8	Putative terminase large subunit	NA
UHGV-0205717_34	eggNOG-mapper	1399942.U3PBG5_9CAUD	Phage Terminase	NA
UHGV-0205717_34	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0205717_34	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0205717_34	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0205717_35	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0205717_35	UniRef90	UniRef90_R6PVW0	Phage-related protein	NA
UHGV-0205717_35	eggNOG-mapper	742738.HMPREF9460_01362	phage terminase small subunit	NA
UHGV-0205717_35	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0205717_35	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0205717_35	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0205717_35	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0205717_36	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0205717_36	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0205717_36	UniRef90	UniRef90_UPI00187661DA	HNH endonuclease	NA
UHGV-0205717_36	eggNOG-mapper	1414720.CBYM010000002_gene577	HNH nucleases	NA
UHGV-0205717_36	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0205717_37	eggNOG-mapper	1304880.JAGB01000002_gene2225	NA	NA
UHGV-0205717_38	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0205717_38	eggNOG-mapper	536233.CLO_3655	NA	NA
UHGV-0205717_38	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0205717_43	PHROG	phrog_23707	NA	unknown function
UHGV-0205717_43	UniRef90	UniRef90_A0A3A9D2T4	Alanine racemase	NA
UHGV-0205717_44	PHROG	phrog_7566	NA	unknown function
UHGV-0205717_44	eggNOG-mapper	508419.F8J187_9CAUD	NA	NA
UHGV-0205717_46	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0205717_46	UniRef90	UniRef90_A0A173RHG7	PUA domain (Predicted RNA-binding domain)	NA
UHGV-0205717_46	eggNOG-mapper	476272.RUMHYD_03330	NA	NA
UHGV-0205717_46	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0205717_46	Structural annotation	PF01507, MF_03053, TIGR02057, COG1606	NA	NA
UHGV-0205717_50	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0205717_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0205717_50	UniRef90	UniRef90_UPI00187722C8	helix-turn-helix domain-containing protein	NA
UHGV-0205717_50	eggNOG-mapper	431943.CKL_4031	Helix-turn-helix XRE-family like proteins	NA
UHGV-0205717_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0205717_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0205717_50	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0205717	Yes	29,354 bps	42.51%	100.00%	0.9692
UHGV-1394817	No	29,356 bps	42.52%	82.76%	0.9674
UHGV-1939797	No	27,834 bps	42.51%	78.43%	0.9678
UHGV-0205837	No	15,512 bps	44.06%	42.66%	0.9737
UHGV-2227477	No	14,571 bps	42.19%	41.89%	0.9709
UHGV-2215492	No	10,158 bps	44.55%	14.74%	0.9652