vOTU-048007

Overview

vOTU representative UHGV-0206001

No. of genomes 3

Genome length 33,929 bps

Completeness 100.00% (complete)

Host Gemmiger

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-048007
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00022 › vSUBFAM-00313 › vGENUS-00344 › vSUBGEN-00300 › vOTU-048007
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Gemmiger
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0206001
BioSample	SAMN09781781
Genome length	33,929 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	46
CDS density	93.72%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0206001_1	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0206001_1	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0206001_1	UniRef90	UniRef90_A0A6N8H052	Helix-turn-helix domain-containing protein	NA
UHGV-0206001_1	eggNOG-mapper	411483.FAEPRAA2165_03041	NA	NA
UHGV-0206001_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0206001_1	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0206001_1	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0206001_1	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0206001_2	eggNOG-mapper	1114972.AUAW01000005_gene253	Short C-terminal domain	NA
UHGV-0206001_2	Pfam	PF14472	NA	DUF4429
UHGV-0206001_3	KOfam	K14059	int; integrase	NA
UHGV-0206001_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0206001_3	UniRef90	UniRef90_A0A1Q6T3G6	Tyr recombinase domain-containing protein	NA
UHGV-0206001_3	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0206001_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0206001_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0206001_3	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0206001_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0206001_5	UniRef90	UniRef90_A0A2W4PQ46	XRE family transcriptional regulator	NA
UHGV-0206001_5	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0206001_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0206001_6	PHROG	phrog_199	holin	lysis
UHGV-0206001_6	UniRef90	UniRef90_UPI001C0198F4	phage holin family protein	NA
UHGV-0206001_6	eggNOG-mapper	411471.SUBVAR_05868	toxin secretion phage lysis holin	NA
UHGV-0206001_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0206001_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0206001_6	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0206001_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0206001_7	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0206001_7	PHROG	phrog_3578	metallo-endopeptidase	other
UHGV-0206001_7	UniRef90	UniRef90_UPI001C02DE01	peptidoglycan DD-metalloendopeptidase family protein	NA
UHGV-0206001_7	eggNOG-mapper	411471.SUBVAR_05145	heme binding	NA
UHGV-0206001_7	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0206001_7	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0206001_7	Structural annotation	PF01551, NF040883	NA	NA
UHGV-0206001_8	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0206001_8	UniRef90	UniRef90_A0A316S635	Adenine methyltransferase	NA
UHGV-0206001_8	eggNOG-mapper	1567011.A0A0A7RUD1_9VIRU	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0206001_8	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0206001_8	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0206001_8	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-0206001_10	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-0206001_10	UniRef90	UniRef90_UPI0006D0549A	phage tail assembly chaperone	NA
UHGV-0206001_10	eggNOG-mapper	666685.R2APBS1_2865	Phage tail assembly chaperone protein	NA
UHGV-0206001_10	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0206001_10	Structural annotation	PF16778	NA	NA
UHGV-0206001_11	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0206001_11	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0206001_11	UniRef90	UniRef90_A0A329TTF1	Reverse transcriptase domain-containing protein	NA
UHGV-0206001_11	eggNOG-mapper	411468.CLOSCI_01505	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0206001_11	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0206001_11	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0206001_11	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0206001_11	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0206001_12	PHROG	phrog_5302	tail protein	tail
UHGV-0206001_12	UniRef90	UniRef90_A0A1F8V1G3	BppU_N domain-containing protein	NA
UHGV-0206001_12	eggNOG-mapper	411470.RUMGNA_00248	Phage tail-collar fibre protein	NA
UHGV-0206001_12	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0206001_13	Structural annotation	PF16407	NA	NA
UHGV-0206001_14	Structural annotation	PF18614, MF_00085, NF003082, COG0361	NA	NA
UHGV-0206001_15	PHROG	phrog_26795	NA	unknown function
UHGV-0206001_15	eggNOG-mapper	742740.HMPREF9474_04294	NA	NA
UHGV-0206001_15	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0206001_16	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-0206001_16	Structural annotation	PF02010, PF06995, MF_04116, NF010681, COG3401, COG3499	NA	NA
UHGV-0206001_17	PHROG	phrog_33680	NA	unknown function
UHGV-0206001_17	UniRef90	UniRef90_A0A174XMM8	Tail tape measure protein TP901 core region	NA
UHGV-0206001_17	eggNOG-mapper	742740.HMPREF9474_04296	Phage tail tape measure protein TP901	NA
UHGV-0206001_17	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0206001_17	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0206001_18	Structural annotation	PF12363	NA	NA
UHGV-0206001_19	Structural annotation	PF06488, TIGR01603	NA	NA
UHGV-0206001_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0206001_21	eggNOG-mapper	1195236.CTER_5108	Phage protein, HK97 gp10 family	NA
UHGV-0206001_21	Structural annotation	TIGR01725	NA	NA
UHGV-0206001_22	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0206001_22	UniRef90	UniRef90_UPI00195B41A2	phage head closure protein	NA
UHGV-0206001_22	eggNOG-mapper	411470.RUMGNA_02070	NA	NA
UHGV-0206001_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0206001_23	PHROG	phrog_5223	neck protein	connector
UHGV-0206001_23	UniRef90	UniRef90_UPI00195CBB4A	DNA-packaging protein	NA
UHGV-0206001_23	eggNOG-mapper	411471.SUBVAR_05853	NA	NA
UHGV-0206001_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-0206001_24	UniRef90	UniRef90_A0A1C5W5F9	Phage major capsid protein, HK97 family	NA
UHGV-0206001_24	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0206001_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0206001_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0206001_24	Structural annotation	PF05065, PF09032, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0206001_25	KOfam	K06904	NA	NA
UHGV-0206001_25	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0206001_25	UniRef90	UniRef90_A0A1C5W530	Phage prohead protease, HK97 family	NA
UHGV-0206001_25	eggNOG-mapper	411471.SUBVAR_05851	Caudovirus prohead serine protease	NA
UHGV-0206001_25	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0206001_25	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0206001_25	COG	COG3740	Phage head maturation protease	NA
UHGV-0206001_25	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0206001_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-0206001_26	UniRef90	UniRef90_UPI00195C5E58	phage portal protein	NA
UHGV-0206001_26	eggNOG-mapper	742740.HMPREF9474_04306	Phage portal protein	NA
UHGV-0206001_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0206001_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0206001_26	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0206001_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0206001_27	UniRef90	UniRef90_A0A8J6TY49	Terminase large subunit	NA
UHGV-0206001_27	eggNOG-mapper	411471.SUBVAR_05848	large subunit	NA
UHGV-0206001_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0206001_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0206001_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0206001_27	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0206001_28	PHROG	phrog_1066	NA	unknown function
UHGV-0206001_28	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-0206001_28	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0206001_29	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0206001_29	UniRef90	UniRef90_UPI00195B555F	HNH endonuclease	NA
UHGV-0206001_29	eggNOG-mapper	543734.LCABL_11060	HNH endonuclease	NA
UHGV-0206001_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0206001_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0206001_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0206001_30	UniRef90	UniRef90_A0A6N8H4L3	Sigma70_r4 domain-containing protein	NA
UHGV-0206001_30	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0206001_30	Structural annotation	PF04545, TIGR02984	NA	NA
UHGV-0206001_32	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0206001_32	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0206001_32	UniRef90	UniRef90_A0A1Q6T350	ParB domain-containing protein	NA
UHGV-0206001_32	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0206001_32	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0206001_32	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0206001_32	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0206001_33	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0206001_33	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0206001_33	UniRef90	UniRef90_A0A1Q6T3I8	AAA_31 domain-containing protein	NA
UHGV-0206001_33	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0206001_33	Pfam	PF13614	AAA domain	AAA_31
UHGV-0206001_33	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0206001_33	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0206001_34	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0206001_34	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0206001_34	UniRef90	UniRef90_A0A6N8GZX5	DNA helicase	NA
UHGV-0206001_34	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-0206001_34	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0206001_34	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0206001_34	COG	COG0305	Replicative DNA helicase	NA
UHGV-0206001_34	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0206001_35	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0206001_35	UniRef90	UniRef90_A0A6N8H2D2	Helix-turn-helix domain-containing protein	NA
UHGV-0206001_35	eggNOG-mapper	411471.SUBVAR_05835	Helix-turn-helix domain	NA
UHGV-0206001_35	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0206001_35	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0206001_35	Structural annotation	PF13730, MF_01909, TIGR04176, COG3355	NA	NA
UHGV-0206001_36	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0206001_36	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0206001_36	UniRef90	UniRef90_A0A1Q6T3F1	Single-stranded DNA-binding protein	NA
UHGV-0206001_36	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0206001_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0206001_36	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0206001_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0206001_36	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0206001_36	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0206001_37	PHROG	phrog_1029	NA	unknown function
UHGV-0206001_37	UniRef90	UniRef90_A0A0P0N9M8	Phage-related protein	NA
UHGV-0206001_37	eggNOG-mapper	411471.SUBVAR_05833	NA	NA
UHGV-0206001_37	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0206001_38	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0206001_38	UniRef90	UniRef90_A0A316QIB2	Replication terminator protein	NA
UHGV-0206001_38	eggNOG-mapper	411471.SUBVAR_05832	NA	NA
UHGV-0206001_40	PHROG	phrog_7566	NA	unknown function
UHGV-0206001_40	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0206001_41	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0206001_41	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0206001_42	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0206001_42	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0206001_42	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0206001_43	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0206001_43	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0206001_44	PHROG	phrog_10280	NA	unknown function
UHGV-0206001_44	eggNOG-mapper	1211640.K4JWC4_9CAUD	NA	NA
UHGV-0206001_46	UniRef90	UniRef90_UPI0019572A8A	helix-turn-helix domain-containing protein	NA
UHGV-0206001_46	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0206001_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0206001	Yes	33,929 bps	59.10%	100.00%	0.9793
UHGV-0180682	No	33,951 bps	59.08%	99.90%	0.9778
UHGV-1775054	No	13,876 bps	57.70%	42.16%	0.9818