vOTU-048042

Overview

vOTU representative UHGV-0206295

No. of genomes 8

Genome length 63,868 bps

Completeness 100.00% (complete)

Host Limisoma sp000437795

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-048042
Number of genomes	8
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00023 › vSUBFAM-00752 › vGENUS-00615 › vSUBGEN-16268 › vOTU-048042
Host taxonomy	Bacteria › Bacteroidota › Bacteroidia › Bacteroidales › Muribaculaceae › Limisoma › Limisoma sp000437795
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0206295
BioSample	SAMN09781780
Genome length	63,868 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	76
CDS density	91.72%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0206295_2	PHROG	phrog_32516	NA	unknown function
UHGV-0206295_2	eggNOG-mapper	1227276.HMPREF9148_00144	NA	NA
UHGV-0206295_2	Structural annotation	PF11134, COG2706	NA	NA
UHGV-0206295_4	PHROG	phrog_30264	NA	unknown function
UHGV-0206295_4	eggNOG-mapper	679191.HMPREF9018_0438	NA	NA
UHGV-0206295_5	PHROG	phrog_30965	NA	unknown function
UHGV-0206295_5	UniRef90	UniRef90_R7IZL2	Conserved domain protein	NA
UHGV-0206295_5	eggNOG-mapper	679191.HMPREF9018_0437	NA	NA
UHGV-0206295_5	Structural annotation	NF010236	NA	NA
UHGV-0206295_7	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0206295_7	PHROG	phrog_18293	methyltransferase	other
UHGV-0206295_7	UniRef90	UniRef90_UPI001868305F	site-specific DNA-methyltransferase	NA
UHGV-0206295_7	eggNOG-mapper	411154.GFO_2469	DNA methylase	NA
UHGV-0206295_7	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0206295_7	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0206295_7	COG	COG0863	DNA modification methylase	NA
UHGV-0206295_7	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0206295_8	KOfam	K01771	plc; 1-phosphatidylinositol phosphodiesterase [EC:4.6.1.13]	NA
UHGV-0206295_8	UniRef90	UniRef90_W1I599	Uncultured bacterium extrachromosomal DNA RGI02304	NA
UHGV-0206295_8	eggNOG-mapper	547042.BACCOPRO_02710	NA	NA
UHGV-0206295_8	Pfam	PF00388	Phosphatidylinositol-specific phospholipase C, X domain	PI-PLC-X
UHGV-0206295_8	Structural annotation	PF16670	NA	NA
UHGV-0206295_9	eggNOG-mapper	742727.HMPREF9447_04872	radical SAM domain protein	NA
UHGV-0206295_9	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0206295_13	PHROG	phrog_11581	NA	unknown function
UHGV-0206295_13	eggNOG-mapper	1121100.JCM6294_1067	NA	NA
UHGV-0206295_15	eggNOG-mapper	457424.BFAG_03331	NA	NA
UHGV-0206295_16	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0206295_16	UniRef90	UniRef90_A0A096ATH7	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0206295_16	eggNOG-mapper	526218.Sterm_2854	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-0206295_16	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0206295_16	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0206295_16	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0206295_17	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0206295_20	Structural annotation	PF19962, NF041007	NA	NA
UHGV-0206295_21	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0206295_21	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0206295_21	UniRef90	UniRef90_A0A096AUD9	DNA helicase	NA
UHGV-0206295_21	eggNOG-mapper	742766.HMPREF9455_01845	Participates in initiation and elongation during chromosome replication	NA
UHGV-0206295_21	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0206295_21	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0206295_21	COG	COG0305	Replicative DNA helicase	NA
UHGV-0206295_21	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0206295_22	Pfam	PF19808	NA	DUF6291
UHGV-0206295_22	Structural annotation	PF19808	NA	NA
UHGV-0206295_24	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0206295_24	eggNOG-mapper	1122971.BAME01000006_gene913	NA	NA
UHGV-0206295_24	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0206295_25	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0206295_25	eggNOG-mapper	1121100.JCM6294_522	NA	NA
UHGV-0206295_25	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0206295_26	eggNOG-mapper	762982.HMPREF9442_00549	NA	NA
UHGV-0206295_27	PHROG	phrog_6244	NA	unknown function
UHGV-0206295_27	UniRef90	UniRef90_UPI0019604DB6	PD-(D/E)XK nuclease family protein	NA
UHGV-0206295_27	eggNOG-mapper	762982.HMPREF9442_00550	NA	NA
UHGV-0206295_27	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0206295_28	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0206295_28	UniRef90	UniRef90_A0A603K486	Recombinase	NA
UHGV-0206295_28	eggNOG-mapper	10754.ERF_BPP22	ERF superfamily	NA
UHGV-0206295_28	Pfam	PF04404	ERF superfamily	ERF
UHGV-0206295_28	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0206295_32	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0206295_32	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0206295_32	Structural annotation	PF12728, MF_01155, NF033787, COG3311	NA	NA
UHGV-0206295_34	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0206295_34	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0206295_37	KOfam	K07487	K07487; transposase	NA
UHGV-0206295_37	PHROG	phrog_8928	NA	unknown function
UHGV-0206295_37	UniRef90	UniRef90_A0A3R6I6I6	IS1182 family transposase	NA
UHGV-0206295_37	eggNOG-mapper	679937.Bcop_0295	PFAM Transposase DDE domain	NA
UHGV-0206295_37	Pfam	PF05598	NA	DUF772
UHGV-0206295_37	Pfam	PF13751	Transposase DDE domain	DDE_Tnp_1_6
UHGV-0206295_37	NCBIFam	NF033551.1	IS1182 family transposase	NA
UHGV-0206295_37	COG	COG3039	Transposase and inactivated derivatives, IS5 family	NA
UHGV-0206295_42	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0206295_42	UniRef90	UniRef90_UPI00068BC286	helix-turn-helix transcriptional regulator	NA
UHGV-0206295_42	eggNOG-mapper	997884.HMPREF1068_03266	NA	NA
UHGV-0206295_42	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0206295_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0206295_42	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0206295_43	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0206295_43	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0206295_43	UniRef90	UniRef90_A0A8J6NGL2	Helix-turn-helix transcriptional regulator	NA
UHGV-0206295_43	eggNOG-mapper	269798.CHU_0504	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0206295_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0206295_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0206295_43	Structural annotation	PF01381, NF041677, COG1396	NA	NA
UHGV-0206295_45	PHROG	phrog_19255	NA	unknown function
UHGV-0206295_48	eggNOG-mapper	1347393.HG726020_gene1836	NA	NA
UHGV-0206295_49	eggNOG-mapper	1121098.HMPREF1534_01129	NA	NA
UHGV-0206295_50	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0206295_50	PHROG	phrog_14770	NA	unknown function
UHGV-0206295_50	eggNOG-mapper	1227276.HMPREF9148_00165	helicase superfamily c-terminal domain	NA
UHGV-0206295_50	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0206295_50	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0206295_50	Pfam	PF18838	Large polyvalent protein associated domain 23	LPD23
UHGV-0206295_50	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0206295_50	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0206295_51	PHROG	phrog_156	portal protein	head and packaging
UHGV-0206295_51	eggNOG-mapper	1227276.HMPREF9148_00164	NA	NA
UHGV-0206295_51	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0206295_52	PHROG	phrog_22658	NA	unknown function
UHGV-0206295_53	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0206295_53	UniRef90	UniRef90_A0A2V2D167	Terminase	NA
UHGV-0206295_53	eggNOG-mapper	1227276.HMPREF9148_00162	Mu-like prophage FluMu protein gp28	NA
UHGV-0206295_53	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0206295_53	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0206295_54	UniRef90	UniRef90_UPI000E4B5E96	rhomboid family intramembrane serine protease	NA
UHGV-0206295_54	eggNOG-mapper	1121098.HMPREF1534_01123	Rhomboid family	NA
UHGV-0206295_54	Structural annotation	PF01694, MF_01594, TIGR04239, COG0705	NA	NA
UHGV-0206295_55	PHROG	phrog_27246	NA	unknown function
UHGV-0206295_55	eggNOG-mapper	563031.HMPREF0666_01149	NA	NA
UHGV-0206295_56	PHROG	phrog_22323	NA	unknown function
UHGV-0206295_56	eggNOG-mapper	1227276.HMPREF9148_00160	NA	NA
UHGV-0206295_57	PHROG	phrog_26635	NA	unknown function
UHGV-0206295_57	UniRef90	UniRef90_UPI0019250C39	NA	NA
UHGV-0206295_57	eggNOG-mapper	1121098.HMPREF1534_01120	NA	NA
UHGV-0206295_57	Structural annotation	PF17236, MF_04133, TIGR01554, COG4834	NA	NA
UHGV-0206295_58	PHROG	phrog_23743	NA	unknown function
UHGV-0206295_58	eggNOG-mapper	679191.HMPREF9018_0451	NA	NA
UHGV-0206295_59	PHROG	phrog_22135	NA	unknown function
UHGV-0206295_59	eggNOG-mapper	1347393.HG726020_gene1827	NA	NA
UHGV-0206295_59	Structural annotation	PF17212	NA	NA
UHGV-0206295_64	eggNOG-mapper	1203611.KB894547_gene2599	NA	NA
UHGV-0206295_65	UniRef90	UniRef90_UPI001F16170A	phage holin family protein	NA
UHGV-0206295_65	eggNOG-mapper	1121097.JCM15093_2703	NA	NA
UHGV-0206295_65	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0206295_65	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0206295_66	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0206295_66	PHROG	phrog_894	endolysin	lysis
UHGV-0206295_66	UniRef90	UniRef90_A0A0I9SAU9	Peptidase M15	NA
UHGV-0206295_66	eggNOG-mapper	449673.BACSTE_00851	Peptidase M15	NA
UHGV-0206295_66	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0206295_66	COG	COG3108	NA	NA
UHGV-0206295_66	Structural annotation	PF08291, COG3108	NA	NA
UHGV-0206295_67	eggNOG-mapper	983544.Lacal_2877	NA	NA
UHGV-0206295_68	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0206295_68	UniRef90	UniRef90_A0A1C7H0S7	HTH cro/C1-type domain-containing protein	NA
UHGV-0206295_68	eggNOG-mapper	1122992.CBQQ010000024_gene1562	helix-turn-helix domain protein	NA
UHGV-0206295_68	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0206295_68	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0206295_68	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0206295_68	Structural annotation	PF06114, PF01381, MF_00584, NF038139, COG2856, COG1476	NA	NA
UHGV-0206295_69	eggNOG-mapper	1347393.HG726021_gene391	NA	NA
UHGV-0206295_70	UniRef90	UniRef90_A0A8D9UI10	Chromosomal replication initiator protein	NA
UHGV-0206295_70	eggNOG-mapper	762968.HMPREF9441_00556	Bacterial dnaA protein helix-turn-helix	NA
UHGV-0206295_74	Structural annotation	PF10628	NA	NA
UHGV-0206295_76	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0206295_76	PHROG	phrog_1	integrase	integration and excision
UHGV-0206295_76	UniRef90	UniRef90_A0A174W4W2	Site-specific recombinase XerD	NA
UHGV-0206295_76	eggNOG-mapper	1433126.BN938_1066	Belongs to the 'phage' integrase family	NA
UHGV-0206295_76	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0206295_76	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0206295_76	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0206295_76	Structural annotation	PF00589, MF_01808, NF002331, COG4974	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0206295	Yes	63,868 bps	48.40%	100.00%	0.9758
UHGV-1823277	No	23,334 bps	47.41%	36.78%	0.9772
UHGV-1693608	No	23,273 bps	47.59%	36.72%	0.9796
UHGV-1572516	No	21,718 bps	47.79%	34.25%	0.9784
UHGV-1841113	No	18,479 bps	47.04%	29.13%	0.9788
UHGV-1668461	No	13,990 bps	46.76%	22.05%	0.9790
UHGV-0157608	No	12,726 bps	48.01%	20.05%	0.9753
UHGV-1683800	No	12,726 bps	48.01%	20.05%	0.9753