vOTU-048075

Overview

vOTU representative UHGV-0206538

No. of genomes 9

Genome length 36,042 bps

Completeness 100.00% (complete)

Host Ruminococcus B gnavus

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-048075
Number of genomes	9
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 › vSUBFAM-00099 › vGENUS-00355 › vSUBGEN-18839 › vOTU-048075
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Lachnospirales › Lachnospiraceae › Ruminococcus B › Ruminococcus B gnavus
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0206538
BioSample	SAMN10408170
Genome length	36,042 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	60
CDS density	92.32%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0206538_1	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0206538_1	UniRef90	UniRef90_A0A8B3C0A6	TMP_3 domain-containing protein	NA
UHGV-0206538_1	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0206538_1	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0206538_1	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0206538_1	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0206538_1	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0206538_2	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0206538_2	UniRef90	UniRef90_A7B3U8	Putative phage tail component domain protein	NA
UHGV-0206538_2	eggNOG-mapper	411470.RUMGNA_02229	NA	NA
UHGV-0206538_2	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0206538_2	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0206538_2	COG	COG4722	Phage-related protein YomH	NA
UHGV-0206538_2	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0206538_3	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0206538_3	UniRef90	UniRef90_A7B3U9	Phage minor structural protein, N-terminal domain protein	NA
UHGV-0206538_3	eggNOG-mapper	411470.RUMGNA_02230	NA	NA
UHGV-0206538_3	Structural annotation	PF14594, PF08931, PF20942, TIGR01665, COG4926	NA	NA
UHGV-0206538_4	eggNOG-mapper	608534.GCWU000341_02271	NA	NA
UHGV-0206538_5	PHROG	phrog_10091	holin	lysis
UHGV-0206538_5	UniRef90	UniRef90_A0A2N5P008	Phage holin	NA
UHGV-0206538_5	eggNOG-mapper	428127.EUBDOL_01206	COG5546 Small integral membrane protein	NA
UHGV-0206538_5	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0206538_5	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0206538_5	COG	COG5546	NA	NA
UHGV-0206538_5	Structural annotation	COG5546	NA	NA
UHGV-0206538_7	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0206538_7	PHROG	phrog_833	endolysin	lysis
UHGV-0206538_7	UniRef90	UniRef90_A0A829NR25	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0206538_7	eggNOG-mapper	411470.RUMGNA_03787	COG NOG33632 non supervised orthologous group	NA
UHGV-0206538_7	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0206538_7	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0206538_7	Structural annotation	PF01510, COG5632	NA	NA
UHGV-0206538_9	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0206538_9	PHROG	phrog_95	integrase	integration and excision
UHGV-0206538_9	UniRef90	UniRef90_A7B3P5	Resolvase, N-terminal domain protein	NA
UHGV-0206538_9	eggNOG-mapper	411470.RUMGNA_02175	Resolvase, N terminal domain	NA
UHGV-0206538_9	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0206538_9	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0206538_9	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0206538_10	PHROG	phrog_7974	NA	unknown function
UHGV-0206538_10	UniRef90	UniRef90_A7B3P6	NA	NA
UHGV-0206538_10	eggNOG-mapper	411470.RUMGNA_02177	belongs to the thioredoxin family	NA
UHGV-0206538_10	Pfam	PF14020	NA	DUF4236
UHGV-0206538_10	COG	COG3118	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	NA
UHGV-0206538_10	Structural annotation	PF14020, PF02368, COG1721	NA	NA
UHGV-0206538_12	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0206538_12	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0206538_12	UniRef90	UniRef90_A0A2N5P5C5	HTH cro/C1-type domain-containing protein	NA
UHGV-0206538_12	eggNOG-mapper	397288.C806_00131	Transcriptional	NA
UHGV-0206538_12	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0206538_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0206538_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0206538_12	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0206538_13	UniRef90	UniRef90_A0A2N5P5C9	Transcriptional regulator	NA
UHGV-0206538_13	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-0206538_13	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0206538_13	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0206538_14	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0206538_14	UniRef90	UniRef90_UPI000E4A5456	Rha family transcriptional regulator	NA
UHGV-0206538_14	eggNOG-mapper	1304866.K413DRAFT_3063	TIGRFAM phage regulatory protein, Rha family	NA
UHGV-0206538_14	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0206538_14	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0206538_14	COG	COG3617	Prophage antirepressor	NA
UHGV-0206538_14	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0206538_17	Structural annotation	NF037954	NA	NA
UHGV-0206538_18	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0206538_18	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0206538_18	UniRef90	UniRef90_A7B3Q4	AntA/AntB antirepressor	NA
UHGV-0206538_18	eggNOG-mapper	411470.RUMGNA_02184	Phage antirepressor protein	NA
UHGV-0206538_18	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0206538_18	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0206538_18	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0206538_18	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0206538_19	eggNOG-mapper	1235790.C805_00014	NA	NA
UHGV-0206538_26	PHROG	phrog_30234	NA	unknown function
UHGV-0206538_26	eggNOG-mapper	411461.DORFOR_00021	NA	NA
UHGV-0206538_27	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0206538_27	UniRef90	UniRef90_UPI001F180A96	NA	NA
UHGV-0206538_27	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0206538_27	Pfam	PF06378	NA	DUF1071
UHGV-0206538_27	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0206538_28	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0206538_28	eggNOG-mapper	411470.RUMGNA_02194	NA	NA
UHGV-0206538_28	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0206538_29	PHROG	phrog_7566	NA	unknown function
UHGV-0206538_29	UniRef90	UniRef90_A0A2N5NVH0	Phosphoenolpyruvate carboxykinase	NA
UHGV-0206538_30	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0206538_30	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0206538_30	UniRef90	UniRef90_A7B3R6	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0206538_30	eggNOG-mapper	411470.RUMGNA_02196	COG COG4570 Holliday junction resolvase	NA
UHGV-0206538_30	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0206538_30	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0206538_30	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0206538_31	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0206538_31	UniRef90	UniRef90_UPI00157072E1	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0206538_31	eggNOG-mapper	411470.RUMGNA_02197	phage replisome	NA
UHGV-0206538_31	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0206538_31	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0206538_31	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0206538_32	PHROG	phrog_9804	NA	unknown function
UHGV-0206538_32	UniRef90	UniRef90_UPI0006C4CB2F	replicative helicase loader/inhibitor	NA
UHGV-0206538_32	eggNOG-mapper	742740.HMPREF9474_03118	Loader and inhibitor of phage G40P	NA
UHGV-0206538_32	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0206538_34	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0206538_34	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0206538_34	UniRef90	UniRef90_A0A8B3BSU1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0206538_34	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-0206538_34	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0206538_34	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0206538_34	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0206538_34	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0206538_35	eggNOG-mapper	610130.Closa_0727	NA	NA
UHGV-0206538_37	PHROG	phrog_8684	NA	unknown function
UHGV-0206538_37	UniRef90	UniRef90_F7K050	YopX domain-containing protein	NA
UHGV-0206538_37	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0206538_37	Pfam	PF09643	YopX protein	YopX
UHGV-0206538_37	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0206538_37	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0206538_38	Structural annotation	PF02895	NA	NA
UHGV-0206538_39	PHROG	phrog_15198	NA	unknown function
UHGV-0206538_39	UniRef90	UniRef90_A0A2N5P5E2	NA	NA
UHGV-0206538_39	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-0206538_39	Pfam	PF04448	NA	DUF551
UHGV-0206538_39	Structural annotation	PF04448	NA	NA
UHGV-0206538_41	eggNOG-mapper	411470.RUMGNA_02203	NA	NA
UHGV-0206538_43	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0206538_43	UniRef90	UniRef90_A7B3S5	Sigma70_r4 domain-containing protein	NA
UHGV-0206538_43	eggNOG-mapper	411470.RUMGNA_02205	Sigma-70, region 4	NA
UHGV-0206538_43	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0206538_43	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0206538_44	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0206538_44	UniRef90	UniRef90_A0A2N5PKF8	Transposase	NA
UHGV-0206538_44	eggNOG-mapper	411470.RUMGNA_02210	transposase activity	NA
UHGV-0206538_44	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0206538_44	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0206538_44	Structural annotation	PF07141	NA	NA
UHGV-0206538_45	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0206538_45	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0206538_45	UniRef90	UniRef90_A7B3T0	Phage terminase, large subunit, PBSX family	NA
UHGV-0206538_45	eggNOG-mapper	411470.RUMGNA_02211	NA	NA
UHGV-0206538_45	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0206538_45	COG	COG1783	Phage terminase large subunit	NA
UHGV-0206538_45	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0206538_46	PHROG	phrog_533	portal protein	head and packaging
UHGV-0206538_46	UniRef90	UniRef90_A7B3T1	Putative phage minor capsid protein	NA
UHGV-0206538_46	eggNOG-mapper	411470.RUMGNA_02212	NA	NA
UHGV-0206538_46	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0206538_47	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0206538_47	UniRef90	UniRef90_UPI001EE14397	phage minor capsid protein	NA
UHGV-0206538_47	eggNOG-mapper	411470.RUMGNA_02213	Phage minor capsid protein 2	NA
UHGV-0206538_47	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0206538_47	COG	COG2369	NA	NA
UHGV-0206538_47	Structural annotation	PF06152	NA	NA
UHGV-0206538_48	eggNOG-mapper	411470.RUMGNA_02214	NA	NA
UHGV-0206538_48	Structural annotation	PF08948, MF_01537, NF007541, COG3123	NA	NA
UHGV-0206538_49	eggNOG-mapper	411470.RUMGNA_02215	NA	NA
UHGV-0206538_51	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0206538_51	Structural annotation	NF040910	NA	NA
UHGV-0206538_52	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0206538_52	UniRef90	UniRef90_A5KPA4	Phage minor structural protein GP20	NA
UHGV-0206538_52	eggNOG-mapper	411470.RUMGNA_02218	COG NOG36366 non supervised orthologous group	NA
UHGV-0206538_52	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0206538_52	Structural annotation	PF06810	NA	NA
UHGV-0206538_53	PHROG	phrog_422	major head protein	head and packaging
UHGV-0206538_53	eggNOG-mapper	411470.RUMGNA_02219	NA	NA
UHGV-0206538_53	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0206538_54	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0206538_54	eggNOG-mapper	411470.RUMGNA_02220	NA	NA
UHGV-0206538_55	PHROG	phrog_3366	NA	unknown function
UHGV-0206538_55	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-0206538_55	Pfam	PF20536	NA	DUF6751
UHGV-0206538_55	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0206538_56	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0206538_56	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-0206538_56	eggNOG-mapper	411470.RUMGNA_02222	NA	NA
UHGV-0206538_56	Structural annotation	PF11114	NA	NA
UHGV-0206538_57	PHROG	phrog_3266	tail completion	connector
UHGV-0206538_57	eggNOG-mapper	411470.RUMGNA_02223	NA	NA
UHGV-0206538_57	Structural annotation	PF12691	NA	NA
UHGV-0206538_58	PHROG	phrog_3099	NA	unknown function
UHGV-0206538_58	eggNOG-mapper	411470.RUMGNA_02224	NA	NA
UHGV-0206538_58	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0206538_59	PHROG	phrog_4450	NA	unknown function
UHGV-0206538_59	UniRef90	UniRef90_UPI0018AB083C	AP endonuclease	NA
UHGV-0206538_59	eggNOG-mapper	411470.RUMGNA_02225	NA	NA
UHGV-0206538_59	Pfam	PF20378	NA	DUF6673
UHGV-0206538_59	Structural annotation	PF20378	NA	NA
UHGV-0206538_60	PHROG	phrog_706	NA	unknown function
UHGV-0206538_60	UniRef90	UniRef90_A7B3U5	Bacteriophage Gp15 protein	NA
UHGV-0206538_60	eggNOG-mapper	411470.RUMGNA_02226	COG NOG24969 non supervised orthologous group	NA
UHGV-0206538_60	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0206538_60	Structural annotation	PF06854	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0206538	Yes	36,042 bps	42.17%	100.00%	0.9823
UHGV-0214437	No	36,639 bps	42.17%	99.31%	0.9823
UHGV-0081563	No	36,463 bps	42.21%	98.84%	0.9826
UHGV-1355678	No	35,981 bps	42.18%	97.55%	0.9819
UHGV-1477890	No	29,977 bps	41.77%	81.32%	0.9825
UHGV-1490357	No	27,597 bps	42.97%	74.38%	0.9824
UHGV-0381532	No	20,921 bps	42.71%	56.41%	0.9826
UHGV-2040049	No	19,937 bps	43.63%	53.67%	0.9830
UHGV-2049221	No	14,575 bps	40.22%	38.21%	0.9687