vOTU-048137

Overview

vOTU representative UHGV-0206948

No. of genomes 2

Genome length 34,260 bps

Completeness 100.00% (complete)

Host Ruthenibacterium lactatiformans

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-048137
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00060 › vSUBFAM-01598 › vGENUS-03463 › vSUBGEN-39007 › vOTU-048137
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Ruthenibacterium › Ruthenibacterium lactatiformans
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0206948
BioSample	NA
Genome length	34,260 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	56
CDS density	94.15%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0206948_1	Structural annotation	PF14530, MF_01441, NF009990, COG0783	NA	NA
UHGV-0206948_3	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0206948_3	UniRef90	UniRef90_UPI001E5C8078	phage minor capsid protein	NA
UHGV-0206948_3	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0206948_3	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0206948_3	COG	COG2369	NA	NA
UHGV-0206948_3	Structural annotation	PF06152	NA	NA
UHGV-0206948_4	PHROG	phrog_533	portal protein	head and packaging
UHGV-0206948_4	UniRef90	UniRef90_A0A3A6E951	Phage portal protein	NA
UHGV-0206948_4	eggNOG-mapper	428125.CLOLEP_01803	NA	NA
UHGV-0206948_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0206948_4	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0206948_4	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0206948_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0206948_5	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0206948_5	UniRef90	UniRef90_A0A3A6EPV3	PBSX family phage terminase large subunit	NA
UHGV-0206948_5	eggNOG-mapper	642492.Clole_0814	Phage terminase, large subunit, PBSX family	NA
UHGV-0206948_5	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0206948_5	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0206948_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-0206948_5	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0206948_6	UniRef90	UniRef90_A0A3A6E886	Helix-turn-helix domain-containing protein	NA
UHGV-0206948_6	eggNOG-mapper	428125.CLOLEP_01805	NA	NA
UHGV-0206948_6	Structural annotation	PF13542	NA	NA
UHGV-0206948_7	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0206948_7	Structural annotation	PF07374, TIGR01637	NA	NA
UHGV-0206948_9	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0206948_9	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0206948_9	eggNOG-mapper	1519439.JPJG01000059_gene1914	NA	NA
UHGV-0206948_10	PHROG	phrog_924	NA	unknown function
UHGV-0206948_10	UniRef90	UniRef90_UPI00195D1DCA	NA	NA
UHGV-0206948_10	Pfam	PF04448	NA	DUF551
UHGV-0206948_10	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0206948_14	eggNOG-mapper	665956.HMPREF1032_03084	NA	NA
UHGV-0206948_16	Structural annotation	PF06257, NF011232	NA	NA
UHGV-0206948_17	PHROG	phrog_38832	NA	unknown function
UHGV-0206948_18	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0206948_18	UniRef90	UniRef90_A0A371AZL8	DNA cytosine methyltransferase	NA
UHGV-0206948_18	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0206948_18	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0206948_18	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0206948_20	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0206948_20	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0206948_20	UniRef90	UniRef90_A0A3A6E967	Methyltransferase	NA
UHGV-0206948_20	eggNOG-mapper	910314.HMPREF9220_0636	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0206948_20	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0206948_20	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0206948_20	COG	COG0863	DNA modification methylase	NA
UHGV-0206948_20	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0206948_22	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0206948_22	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0206948_22	UniRef90	UniRef90_UPI0006D84EB7	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0206948_22	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0206948_22	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0206948_23	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0206948_23	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0206948_23	UniRef90	UniRef90_A0A0W7TNB4	DNA helicase	NA
UHGV-0206948_23	eggNOG-mapper	665956.HMPREF1032_02618	Participates in initiation and elongation during chromosome replication	NA
UHGV-0206948_23	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0206948_23	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0206948_23	COG	COG0305	Replicative DNA helicase	NA
UHGV-0206948_23	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0206948_24	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0206948_24	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0206948_24	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0206948_24	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0206948_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0206948_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0206948_25	UniRef90	UniRef90_A0A3A6ECW8	Single-stranded DNA-binding protein	NA
UHGV-0206948_25	eggNOG-mapper	665956.HMPREF1032_00430	Single-stranded DNA-binding protein	NA
UHGV-0206948_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0206948_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0206948_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0206948_25	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0206948_25	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0206948_26	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0206948_26	UniRef90	UniRef90_A0A498CPV0	HNH endonuclease	NA
UHGV-0206948_26	eggNOG-mapper	1123058.KB894266_gene1536	HNH endonuclease	NA
UHGV-0206948_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0206948_27	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0206948_27	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-0206948_27	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0206948_27	Structural annotation	PF05772	NA	NA
UHGV-0206948_28	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0206948_28	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0206948_28	eggNOG-mapper	742767.HMPREF9456_02397	NA	NA
UHGV-0206948_28	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0206948_30	eggNOG-mapper	1235802.C823_04724	NA	NA
UHGV-0206948_31	PHROG	phrog_1123	NA	unknown function
UHGV-0206948_31	Structural annotation	PF02002, MF_01804, NF040939, COG3355	NA	NA
UHGV-0206948_32	AcrCatalog	cluster_35670	NA	NA
UHGV-0206948_32	Structural annotation	NF042413	NA	NA
UHGV-0206948_34	UniRef90	UniRef90_A0A0D8IY67	HTH cro/C1-type domain-containing protein	NA
UHGV-0206948_34	eggNOG-mapper	1235792.C808_03097	Helix-turn-helix XRE-family like proteins	NA
UHGV-0206948_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0206948_34	Structural annotation	PF08667, NF041951, COG3655	NA	NA
UHGV-0206948_35	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0206948_35	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0206948_35	UniRef90	UniRef90_A0A0D8IX18	HTH cro/C1-type domain-containing protein	NA
UHGV-0206948_35	eggNOG-mapper	665956.HMPREF1032_01654	Peptidase S24-like	NA
UHGV-0206948_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0206948_35	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0206948_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0206948_35	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-0206948_36	eggNOG-mapper	411471.SUBVAR_05869	repeat protein	NA
UHGV-0206948_36	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0206948_37	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0206948_37	PHROG	phrog_95	integrase	integration and excision
UHGV-0206948_37	UniRef90	UniRef90_A0A3A6E4S5	Recombinase family protein	NA
UHGV-0206948_37	eggNOG-mapper	1291050.JAGE01000001_gene2185	NA	NA
UHGV-0206948_37	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0206948_37	Pfam	PF07508	Recombinase	Recombinase
UHGV-0206948_37	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0206948_37	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0206948_37	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0206948_38	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0206948_38	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0206948_38	UniRef90	UniRef90_UPI0009E291B2	helix-turn-helix transcriptional regulator	NA
UHGV-0206948_38	eggNOG-mapper	760568.Desku_1400	sequence-specific DNA binding	NA
UHGV-0206948_38	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0206948_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0206948_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0206948_38	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0206948_41	PHROG	phrog_1129	holin	lysis
UHGV-0206948_41	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-0206948_41	eggNOG-mapper	411460.RUMTOR_01325	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0206948_41	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0206948_41	Structural annotation	PF16079	NA	NA
UHGV-0206948_42	eggNOG-mapper	33035.JPJF01000090_gene94	NA	NA
UHGV-0206948_43	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0206948_43	PHROG	phrog_3088	amidase	lysis
UHGV-0206948_43	UniRef90	UniRef90_UPI0019676D30	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0206948_43	eggNOG-mapper	1449126.JQKL01000046_gene2088	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0206948_43	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0206948_43	Pfam	PF05036	SPOR domain	SPOR
UHGV-0206948_43	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0206948_43	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0206948_44	PHROG	phrog_13564	minor tail protein	tail
UHGV-0206948_44	UniRef90	UniRef90_A0A0D8IYB2	BppU_N domain-containing protein	NA
UHGV-0206948_44	eggNOG-mapper	665956.HMPREF1032_03918	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	NA
UHGV-0206948_44	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0206948_44	Structural annotation	PF10651	NA	NA
UHGV-0206948_45	PHROG	phrog_5555	tail protein	tail
UHGV-0206948_45	UniRef90	UniRef90_A0A3A6ECU0	Prophage_tail domain-containing protein	NA
UHGV-0206948_45	eggNOG-mapper	1280689.AUJC01000007_gene3306	Phage minor structural protein	NA
UHGV-0206948_45	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0206948_45	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0206948_45	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0206948_45	Structural annotation	PF06605, TIGR01665, COG4926	NA	NA
UHGV-0206948_46	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0206948_46	UniRef90	UniRef90_R6N293	Putative phage tail component domain protein	NA
UHGV-0206948_46	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0206948_47	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0206948_47	UniRef90	UniRef90_A0A3A6E908	TMP_3 domain-containing protein	NA
UHGV-0206948_47	eggNOG-mapper	883066.HMPREF9233_00612	tape measure	NA
UHGV-0206948_47	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0206948_47	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0206948_47	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0206948_47	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0206948_48	PHROG	phrog_706	NA	unknown function
UHGV-0206948_48	UniRef90	UniRef90_UPI000C819E80	Gp15 family bacteriophage protein	NA
UHGV-0206948_48	eggNOG-mapper	428125.CLOLEP_01787	Bacteriophage Gp15 protein	NA
UHGV-0206948_48	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0206948_48	Structural annotation	PF06854	NA	NA
UHGV-0206948_49	Structural annotation	PF10666	NA	NA
UHGV-0206948_50	PHROG	phrog_820	major tail protein	tail
UHGV-0206948_50	UniRef90	UniRef90_A0A3A6EPU8	S-l_SbsC_C domain-containing protein	NA
UHGV-0206948_50	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0206948_50	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0206948_50	COG	COG5492	NA	NA
UHGV-0206948_50	Structural annotation	PF06199, PF18316, TIGR02126, COG5437	NA	NA
UHGV-0206948_51	Structural annotation	PF12691	NA	NA
UHGV-0206948_52	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0206948_52	UniRef90	UniRef90_UPI001899C432	minor capsid protein	NA
UHGV-0206948_52	eggNOG-mapper	1214217.ALNF01000014_gene1371	Minor capsid protein	NA
UHGV-0206948_52	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0206948_52	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0206948_53	UniRef90	UniRef90_UPI001D06E7F2	minor capsid protein	NA
UHGV-0206948_53	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0206948_54	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0206948_54	eggNOG-mapper	1231057.AMGD01000018_gene3617	NA	NA
UHGV-0206948_55	PHROG	phrog_422	major head protein	head and packaging
UHGV-0206948_55	UniRef90	UniRef90_A0A316T938	S-l_SbsC_C domain-containing protein	NA
UHGV-0206948_55	eggNOG-mapper	428125.CLOLEP_00183	COG NOG28280 non supervised orthologous group	NA
UHGV-0206948_55	Structural annotation	PF19821, PF18316, MF_04119, TIGR04387, COG4653	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0206948	Yes	34,260 bps	48.00%	100.00%	0.9810
UHGV-0383482	No	16,355 bps	48.59%	47.93%	0.9814