vOTU-048317

Overview

vOTU representative UHGV-0208078

No. of genomes 7

Genome length 36,767 bps

Completeness 100.00% (complete)

Host Ruminococcus B gnavus

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-048317
Number of genomes	7
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 › vSUBFAM-00099 › vGENUS-08338 › vSUBGEN-08068 › vOTU-048317
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Lachnospirales › Lachnospiraceae › Ruminococcus B › Ruminococcus B gnavus
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0208078
BioSample	SAMN10080924
Genome length	36,767 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	54
CDS density	91.01%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0208078_1	PHROG	phrog_7974	NA	unknown function
UHGV-0208078_1	UniRef90	UniRef90_A7B3P6	NA	NA
UHGV-0208078_1	eggNOG-mapper	411470.RUMGNA_02177	belongs to the thioredoxin family	NA
UHGV-0208078_1	Pfam	PF14020	NA	DUF4236
UHGV-0208078_1	COG	COG3118	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	NA
UHGV-0208078_1	Structural annotation	PF14020, PF02368, COG1721	NA	NA
UHGV-0208078_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0208078_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0208078_3	UniRef90	UniRef90_A0A2N5P5C5	HTH cro/C1-type domain-containing protein	NA
UHGV-0208078_3	eggNOG-mapper	397288.C806_00131	Transcriptional	NA
UHGV-0208078_3	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0208078_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0208078_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0208078_3	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0208078_4	UniRef90	UniRef90_A0A2N5P5C9	Transcriptional regulator	NA
UHGV-0208078_4	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-0208078_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0208078_4	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0208078_5	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0208078_5	UniRef90	UniRef90_UPI000E4A5456	Rha family transcriptional regulator	NA
UHGV-0208078_5	eggNOG-mapper	1304866.K413DRAFT_3063	TIGRFAM phage regulatory protein, Rha family	NA
UHGV-0208078_5	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0208078_5	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0208078_5	COG	COG3617	Prophage antirepressor	NA
UHGV-0208078_5	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0208078_9	eggNOG-mapper	1235792.C808_03089	NA	NA
UHGV-0208078_11	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0208078_11	PHROG	phrog_1499	NA	unknown function
UHGV-0208078_11	UniRef90	UniRef90_A0A2N5P5I0	AAA_23 domain-containing protein	NA
UHGV-0208078_11	eggNOG-mapper	742733.HMPREF9469_01850	DNA recombination	NA
UHGV-0208078_11	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0208078_11	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0208078_12	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0208078_12	UniRef90	UniRef90_A0A6N7W7U3	Recombinase RecT	NA
UHGV-0208078_12	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-0208078_12	Pfam	PF03837	RecT family	RecT
UHGV-0208078_12	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0208078_13	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0208078_13	UniRef90	UniRef90_A0A2N5P5E1	NA	NA
UHGV-0208078_13	eggNOG-mapper	33035.JPJF01000071_gene4463	NA	NA
UHGV-0208078_13	Pfam	PF12684	NA	DUF3799
UHGV-0208078_13	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0208078_13	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0208078_14	PHROG	phrog_7566	NA	unknown function
UHGV-0208078_14	eggNOG-mapper	742733.HMPREF9469_01847	NA	NA
UHGV-0208078_15	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0208078_15	UniRef90	UniRef90_A0A0F0CCS0	Endodeoxyribonuclease RusA	NA
UHGV-0208078_15	eggNOG-mapper	742733.HMPREF9469_01846	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0208078_15	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0208078_15	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0208078_16	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0208078_16	UniRef90	UniRef90_A0A2N5P5D6	Phage_rep_org_N domain-containing protein	NA
UHGV-0208078_16	eggNOG-mapper	1462526.BN990_03905	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0208078_16	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0208078_16	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0208078_16	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0208078_16	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0208078_17	PHROG	phrog_25488	NA	unknown function
UHGV-0208078_17	Structural annotation	PF12844, PF01316, MF_00535, TIGR00270, COG1476	NA	NA
UHGV-0208078_20	PHROG	phrog_10714	NA	unknown function
UHGV-0208078_20	UniRef90	UniRef90_R6RDV7	DNA polymerase II large subunit	NA
UHGV-0208078_20	eggNOG-mapper	1120998.AUFC01000030_gene2222	NA	NA
UHGV-0208078_24	UniRef90	UniRef90_A0A415S8F5	NA	NA
UHGV-0208078_26	eggNOG-mapper	411470.RUMGNA_02203	NA	NA
UHGV-0208078_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0208078_28	UniRef90	UniRef90_A0A396PTA3	NA	NA
UHGV-0208078_28	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-0208078_28	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0208078_28	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0208078_28	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0208078_29	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0208078_29	UniRef90	UniRef90_A0A2N5PKF8	Transposase	NA
UHGV-0208078_29	eggNOG-mapper	411470.RUMGNA_02210	transposase activity	NA
UHGV-0208078_29	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0208078_29	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0208078_29	Structural annotation	PF07141	NA	NA
UHGV-0208078_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0208078_30	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0208078_30	UniRef90	UniRef90_A7B3T0	Phage terminase, large subunit, PBSX family	NA
UHGV-0208078_30	eggNOG-mapper	411470.RUMGNA_02211	NA	NA
UHGV-0208078_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0208078_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0208078_30	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0208078_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-0208078_31	UniRef90	UniRef90_A7B3T1	Putative phage minor capsid protein	NA
UHGV-0208078_31	eggNOG-mapper	411470.RUMGNA_02212	NA	NA
UHGV-0208078_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0208078_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0208078_32	UniRef90	UniRef90_UPI001EE14397	phage minor capsid protein	NA
UHGV-0208078_32	eggNOG-mapper	411470.RUMGNA_02213	Phage minor capsid protein 2	NA
UHGV-0208078_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0208078_32	COG	COG2369	NA	NA
UHGV-0208078_32	Structural annotation	PF06152	NA	NA
UHGV-0208078_33	eggNOG-mapper	411470.RUMGNA_02214	NA	NA
UHGV-0208078_33	Structural annotation	PF08948, MF_01537, NF007541, COG3123	NA	NA
UHGV-0208078_34	eggNOG-mapper	411470.RUMGNA_02215	NA	NA
UHGV-0208078_35	eggNOG-mapper	411470.RUMGNA_02215	NA	NA
UHGV-0208078_37	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0208078_37	Structural annotation	NF040910	NA	NA
UHGV-0208078_39	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0208078_39	UniRef90	UniRef90_A5KPA4	Phage minor structural protein GP20	NA
UHGV-0208078_39	eggNOG-mapper	411470.RUMGNA_02218	COG NOG36366 non supervised orthologous group	NA
UHGV-0208078_39	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0208078_39	Structural annotation	PF06810	NA	NA
UHGV-0208078_40	PHROG	phrog_422	major head protein	head and packaging
UHGV-0208078_40	eggNOG-mapper	411470.RUMGNA_02219	NA	NA
UHGV-0208078_40	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0208078_41	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0208078_41	eggNOG-mapper	658655.HMPREF0988_02559	NA	NA
UHGV-0208078_42	PHROG	phrog_3366	NA	unknown function
UHGV-0208078_42	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-0208078_42	Pfam	PF20536	NA	DUF6751
UHGV-0208078_42	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0208078_43	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0208078_43	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-0208078_43	eggNOG-mapper	411470.RUMGNA_02222	NA	NA
UHGV-0208078_43	Structural annotation	PF11114	NA	NA
UHGV-0208078_44	PHROG	phrog_3266	tail completion	connector
UHGV-0208078_44	UniRef90	UniRef90_UPI001F2730AA	chloramphenicol resistance protein	NA
UHGV-0208078_44	eggNOG-mapper	411470.RUMGNA_02223	NA	NA
UHGV-0208078_44	Structural annotation	PF12691	NA	NA
UHGV-0208078_45	PHROG	phrog_3099	NA	unknown function
UHGV-0208078_45	eggNOG-mapper	411470.RUMGNA_02224	NA	NA
UHGV-0208078_45	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0208078_46	PHROG	phrog_4450	NA	unknown function
UHGV-0208078_46	UniRef90	UniRef90_A0A416RQL6	AP endonuclease	NA
UHGV-0208078_46	eggNOG-mapper	411470.RUMGNA_02225	NA	NA
UHGV-0208078_46	Pfam	PF20378	NA	DUF6673
UHGV-0208078_46	Structural annotation	PF20378	NA	NA
UHGV-0208078_47	PHROG	phrog_706	NA	unknown function
UHGV-0208078_47	UniRef90	UniRef90_A7B3U5	Bacteriophage Gp15 protein	NA
UHGV-0208078_47	eggNOG-mapper	411470.RUMGNA_02226	COG NOG24969 non supervised orthologous group	NA
UHGV-0208078_47	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0208078_47	Structural annotation	PF06854	NA	NA
UHGV-0208078_48	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0208078_48	UniRef90	UniRef90_A0A8B3C0A6	TMP_3 domain-containing protein	NA
UHGV-0208078_48	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0208078_48	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0208078_48	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0208078_48	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0208078_48	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0208078_49	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0208078_49	UniRef90	UniRef90_A7B3U8	Putative phage tail component domain protein	NA
UHGV-0208078_49	eggNOG-mapper	411470.RUMGNA_02229	NA	NA
UHGV-0208078_49	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0208078_49	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0208078_49	COG	COG4722	Phage-related protein YomH	NA
UHGV-0208078_49	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0208078_50	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0208078_50	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0208078_50	UniRef90	UniRef90_UPI000467D60B	collagen-like protein	NA
UHGV-0208078_50	eggNOG-mapper	411470.RUMGNA_02230	NA	NA
UHGV-0208078_50	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0208078_50	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-0208078_50	Structural annotation	PF14594, PF08931, PF19081, TIGR01665, COG4926	NA	NA
UHGV-0208078_51	PHROG	phrog_199	holin	lysis
UHGV-0208078_51	UniRef90	UniRef90_A0A2N5P5I5	Holin	NA
UHGV-0208078_51	eggNOG-mapper	1469948.JPNB01000001_gene536	TIGRFAM toxin secretion phage lysis holin	NA
UHGV-0208078_51	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0208078_51	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0208078_51	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0208078_51	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0208078_52	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0208078_52	PHROG	phrog_833	endolysin	lysis
UHGV-0208078_52	UniRef90	UniRef90_UPI000E52EE08	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0208078_52	eggNOG-mapper	411470.RUMGNA_03787	COG NOG33632 non supervised orthologous group	NA
UHGV-0208078_52	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0208078_52	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0208078_52	Structural annotation	PF01510, COG5632	NA	NA
UHGV-0208078_53	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0208078_53	PHROG	phrog_95	integrase	integration and excision
UHGV-0208078_53	UniRef90	UniRef90_R5TPY9	Resolvase N-terminal domain protein	NA
UHGV-0208078_53	eggNOG-mapper	97139.C824_05947	Resolvase, N terminal domain	NA
UHGV-0208078_53	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0208078_53	Pfam	PF07508	Recombinase	Recombinase
UHGV-0208078_53	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0208078_53	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0208078_53	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0208078_54	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0208078_54	PHROG	phrog_8036	NA	unknown function
UHGV-0208078_54	UniRef90	UniRef90_A0A414UZM1	DNA damage-inducible protein D	NA
UHGV-0208078_54	eggNOG-mapper	665950.HMPREF1025_02565	NA	NA
UHGV-0208078_54	AcrCatalog	cluster_17589	NA	NA
UHGV-0208078_54	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0208078_54	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0208078_54	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-0208078_54	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0208078_54	Structural annotation	PF09669, NF008573, COG3646	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0208078	Yes	36,767 bps	42.03%	100.00%	0.9819
UHGV-0305808	No	20,666 bps	43.49%	55.63%	0.9821
UHGV-0137847	No	19,022 bps	42.16%	50.77%	0.9832
UHGV-0392272	No	14,649 bps	43.74%	39.30%	0.9827
UHGV-0385333	No	12,652 bps	43.05%	33.81%	0.9830
UHGV-0388183	No	13,072 bps	42.93%	33.78%	0.9811
UHGV-1579880	No	11,516 bps	43.31%	30.88%	0.9828