vOTU-048335

Overview

vOTU representative UHGV-0208253

No. of genomes 2

Genome length 41,057 bps

Completeness 100.00% (complete)

Host Clostridia

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-048335
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00124 › vSUBFAM-00555 › vGENUS-03577 › vSUBGEN-26541 › vOTU-048335
Host taxonomy	Bacteria › Firmicutes A › Clostridia
Host range breadth	Class
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0208253
BioSample	SAMN09781767
Genome length	41,057 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	66
CDS density	92.24%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0208253_3	KOfam	K14059	int; integrase	NA
UHGV-0208253_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0208253_3	UniRef90	UniRef90_A0A845QLR8	Tyr recombinase domain-containing protein	NA
UHGV-0208253_3	eggNOG-mapper	936375.HMPREF1152_1040	Phage integrase family	NA
UHGV-0208253_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0208253_3	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0208253_3	Structural annotation	PF00589, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0208253_5	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0208253_6	PHROG	phrog_16490	NA	unknown function
UHGV-0208253_6	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0208253_8	PHROG	phrog_21718	NA	unknown function
UHGV-0208253_8	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0208253_9	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0208253_9	eggNOG-mapper	476272.RUMHYD_01951	NA	NA
UHGV-0208253_9	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0208253_10	PHROG	phrog_13256	NA	unknown function
UHGV-0208253_10	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0208253_11	PHROG	phrog_4105	NA	unknown function
UHGV-0208253_11	eggNOG-mapper	428125.CLOLEP_01431	NA	NA
UHGV-0208253_12	UniRef90	UniRef90_A0A7X6X882	CHAP domain-containing protein	NA
UHGV-0208253_12	eggNOG-mapper	552396.HMPREF0863_01358	CHAP domain	NA
UHGV-0208253_12	Pfam	PF05257	CHAP domain	CHAP
UHGV-0208253_12	COG	COG3942	Surface antigen	NA
UHGV-0208253_12	Structural annotation	COG3942	NA	NA
UHGV-0208253_13	UniRef90	UniRef90_A0A845QMU2	PBECR3 domain-containing protein	NA
UHGV-0208253_13	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-0208253_13	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0208253_13	Structural annotation	PF18857, PF18798	NA	NA
UHGV-0208253_14	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0208253_14	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0208253_14	Structural annotation	TIGR02559	NA	NA
UHGV-0208253_19	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0208253_19	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-0208253_19	Structural annotation	PF13306, NF041351, COG4886	NA	NA
UHGV-0208253_20	eggNOG-mapper	397290.C810_05240	NA	NA
UHGV-0208253_21	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0208253_21	eggNOG-mapper	1232449.BAHV02000016_gene1816	NA	NA
UHGV-0208253_21	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0208253_23	Structural annotation	PF07100, COG4288	NA	NA
UHGV-0208253_24	PHROG	phrog_267	major head protein	head and packaging
UHGV-0208253_24	UniRef90	UniRef90_A0A352WS63	P22 coat protein-protein 5 domain protein	NA
UHGV-0208253_24	eggNOG-mapper	665956.HMPREF1032_03906	P22 coat protein-protein 5 domain protein	NA
UHGV-0208253_24	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0208253_26	PHROG	phrog_156	portal protein	head and packaging
UHGV-0208253_26	eggNOG-mapper	1232449.BAHV02000016_gene1822	NA	NA
UHGV-0208253_26	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0208253_28	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0208253_28	UniRef90	UniRef90_A0A845QMQ7	Terminase	NA
UHGV-0208253_28	eggNOG-mapper	755731.Clo1100_2438	TIGRFAM Phage	NA
UHGV-0208253_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0208253_28	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0208253_28	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0208253_28	COG	COG5362	Phage terminase large subunit	NA
UHGV-0208253_28	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0208253_30	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0208253_30	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0208253_30	eggNOG-mapper	1121864.OMO_00979	HNH nucleases	NA
UHGV-0208253_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0208253_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0208253_32	Structural annotation	NF040976	NA	NA
UHGV-0208253_33	PHROG	phrog_15863	NA	unknown function
UHGV-0208253_33	UniRef90	UniRef90_A0A1Y3R3M0	J domain-containing protein	NA
UHGV-0208253_33	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-0208253_33	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0208253_38	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0208253_39	PHROG	phrog_1485	NA	unknown function
UHGV-0208253_39	UniRef90	UniRef90_A0A1S1V4F5	NA	NA
UHGV-0208253_39	eggNOG-mapper	1415774.U728_1099	NA	NA
UHGV-0208253_39	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-0208253_45	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0208253_45	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0208253_45	UniRef90	UniRef90_UPI0019CFB3D8	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0208253_45	eggNOG-mapper	1256908.HMPREF0373_02094	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0208253_45	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0208253_45	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0208253_45	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0208253_45	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0208253_47	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0208253_47	eggNOG-mapper	1280692.AUJL01000025_gene2095	NA	NA
UHGV-0208253_47	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0208253_48	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0208253_48	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0208253_48	UniRef90	UniRef90_R6E0A2	Single-stranded DNA-binding protein	NA
UHGV-0208253_48	eggNOG-mapper	888727.HMPREF9092_0557	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0208253_48	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0208253_48	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0208253_48	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0208253_48	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0208253_48	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0208253_49	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0208253_49	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0208253_49	UniRef90	UniRef90_UPI001D09885E	site-specific DNA-methyltransferase	NA
UHGV-0208253_49	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-0208253_49	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0208253_49	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0208253_49	COG	COG0863	DNA modification methylase	NA
UHGV-0208253_49	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0208253_50	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0208253_50	UniRef90	UniRef90_A0A1E3UAI9	MazG domain-containing protein	NA
UHGV-0208253_50	eggNOG-mapper	658655.HMPREF0988_00885	NA	NA
UHGV-0208253_51	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0208253_51	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0208253_51	UniRef90	UniRef90_R6DSN6	Replicative DNA helicase	NA
UHGV-0208253_51	eggNOG-mapper	397287.C807_00122	IstB-like ATP binding protein	NA
UHGV-0208253_51	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0208253_51	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0208253_51	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0208253_51	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0208253_52	PHROG	phrog_15768	NA	unknown function
UHGV-0208253_52	UniRef90	UniRef90_UPI001C1E0E19	GntR family transcriptional regulator	NA
UHGV-0208253_52	eggNOG-mapper	646529.Desaci_3039	Transcriptional regulator	NA
UHGV-0208253_52	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0208253_52	Structural annotation	PF08222, NF033788, COG0640	NA	NA
UHGV-0208253_53	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0208253_53	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0208253_53	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0208253_53	Pfam	PF05772	NinB protein	NinB
UHGV-0208253_54	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0208253_54	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0208253_54	UniRef90	UniRef90_UPI000B35C308	HNH endonuclease	NA
UHGV-0208253_54	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0208253_54	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0208253_55	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0208253_55	UniRef90	UniRef90_UPI001CF8591D	YqaJ viral recombinase family protein	NA
UHGV-0208253_55	eggNOG-mapper	1122146.AUHP01000010_gene1042	YqaJ viral recombinase family	NA
UHGV-0208253_55	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0208253_55	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0208253_55	Structural annotation	PF10926, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0208253_56	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0208253_56	eggNOG-mapper	742767.HMPREF9456_02397	NA	NA
UHGV-0208253_56	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0208253_57	KOfam	K08131	COL9A; collagen type IX alpha	NA
UHGV-0208253_57	PHROG	phrog_4433	NA	unknown function
UHGV-0208253_57	eggNOG-mapper	445970.ALIPUT_01221	DNA-templated transcription, initiation	NA
UHGV-0208253_57	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0208253_57	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0208253_57	Structural annotation	NF007410, NF033144	NA	NA
UHGV-0208253_59	UniRef90	UniRef90_A0A845QLX6	LYZ2 domain-containing protein	NA
UHGV-0208253_59	eggNOG-mapper	1497679.EP56_01765	Peptidase family M23	NA
UHGV-0208253_59	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0208253_59	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0208253_59	Structural annotation	PF01832, NF038016, COG1705	NA	NA
UHGV-0208253_62	KOfam	K19449	sinR; XRE family transcriptional regulator, master regulator for biofilm formation	NA
UHGV-0208253_62	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0208253_62	UniRef90	UniRef90_A0A8G0M6K7	Helix-turn-helix domain-containing protein	NA
UHGV-0208253_62	eggNOG-mapper	445335.CBN_1315	Transcriptional regulator	NA
UHGV-0208253_62	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0208253_62	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0208253_62	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0208253_63	Structural annotation	PF21441, TIGR04176, COG1846	NA	NA
UHGV-0208253_65	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0208253_65	UniRef90	UniRef90_A0A7G9G8R5	Helix-turn-helix transcriptional regulator	NA
UHGV-0208253_65	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0208253_65	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0208253_65	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0208253	Yes	41,057 bps	42.99%	100.00%	0.9757
UHGV-0178197	No	40,578 bps	42.79%	99.90%	0.9772