vOTU-048418

Overview

vOTU representative UHGV-0208950

No. of genomes 3

Genome length 32,380 bps

Completeness 100.00% (complete)

Host Massilimaliae timonensis

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-048418
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00022 › vSUBFAM-04680 › vGENUS-08521 › vSUBGEN-08551 › vOTU-048418
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Massilimaliae › Massilimaliae timonensis
Host range breadth	Species
Host prediction method	PHIST
Lifestyle	Temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0208950
BioSample	SAMN11031395
Genome length	32,380 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	53
CDS density	92.80%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0208950_6	PHROG	phrog_9188	NA	unknown function
UHGV-0208950_6	Structural annotation	PF11023, MF_01502, NF002796	NA	NA
UHGV-0208950_8	UniRef90	UniRef90_A0A8J6IK44	XRE family transcriptional regulator	NA
UHGV-0208950_8	eggNOG-mapper	1430331.EP10_02425	NA	NA
UHGV-0208950_8	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0208950_9	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0208950_9	UniRef90	UniRef90_UPI0018A05A7F	helix-turn-helix transcriptional regulator	NA
UHGV-0208950_9	eggNOG-mapper	718252.FP2_16270	sequence-specific DNA binding	NA
UHGV-0208950_9	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0208950_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0208950_9	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0208950_9	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0208950_10	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0208950_10	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0208950_10	UniRef90	UniRef90_UPI00189E1B38	helix-turn-helix domain-containing protein	NA
UHGV-0208950_10	eggNOG-mapper	1232443.BAIA02000007_gene674	Helix-turn-helix XRE-family like proteins	NA
UHGV-0208950_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0208950_10	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0208950_10	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0208950_11	PHROG	phrog_87	metallo-protease	other
UHGV-0208950_11	UniRef90	UniRef90_UPI0018A04FE7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0208950_11	eggNOG-mapper	1007096.BAGW01000011_gene2354	IrrE N-terminal-like domain	NA
UHGV-0208950_11	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0208950_11	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0208950_11	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0208950_12	PHROG	phrog_1847	NA	unknown function
UHGV-0208950_12	UniRef90	UniRef90_A0A143ZYV9	T5orf172 domain protein	NA
UHGV-0208950_12	eggNOG-mapper	1235792.C808_05258	NA	NA
UHGV-0208950_12	Pfam	PF13250	NA	DUF4041
UHGV-0208950_12	Pfam	PF10544	T5orf172 domain	T5orf172
UHGV-0208950_12	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-0208950_12	Structural annotation	PF13250, PF19824, MF_01506	NA	NA
UHGV-0208950_13	KOfam	K14059	int; integrase	NA
UHGV-0208950_13	PHROG	phrog_1	integrase	integration and excision
UHGV-0208950_13	UniRef90	UniRef90_A0A8J6PFT7	Site-specific integrase	NA
UHGV-0208950_13	eggNOG-mapper	1408823.AXUS01000024_gene2685	Arm DNA-binding domain	NA
UHGV-0208950_13	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0208950_13	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0208950_13	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0208950_13	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0208950_14	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0208950_14	PHROG	phrog_7698	endolysin	lysis
UHGV-0208950_14	UniRef90	UniRef90_UPI001E304781	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0208950_14	eggNOG-mapper	293826.Amet_2548	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0208950_14	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0208950_14	Pfam	PF05036	SPOR domain	SPOR
UHGV-0208950_14	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0208950_15	PHROG	phrog_10091	holin	lysis
UHGV-0208950_15	UniRef90	UniRef90_A0A1C5RHU1	Small integral membrane protein	NA
UHGV-0208950_15	eggNOG-mapper	97139.C824_05950	Bacteriophage holin	NA
UHGV-0208950_15	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0208950_15	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0208950_15	COG	COG5546	NA	NA
UHGV-0208950_15	Structural annotation	COG5546	NA	NA
UHGV-0208950_16	PHROG	phrog_4105	NA	unknown function
UHGV-0208950_16	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0208950_17	eggNOG-mapper	1235797.C816_04174	NA	NA
UHGV-0208950_17	Pfam	PF11192	NA	DUF2977
UHGV-0208950_19	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0208950_19	UniRef90	UniRef90_A0A8J6TY46	Phage tail protein	NA
UHGV-0208950_19	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0208950_19	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0208950_19	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0208950_19	COG	COG4926	Phage-related protein	NA
UHGV-0208950_19	Structural annotation	PF14594, PF04862, TIGR01665, TIGR04362, COG4926	NA	NA
UHGV-0208950_20	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0208950_20	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0208950_20	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0208950_20	COG	COG4722	Phage-related protein YomH	NA
UHGV-0208950_20	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0208950_21	PHROG	phrog_23464	NA	unknown function
UHGV-0208950_21	UniRef90	UniRef90_A0A1C6H5M9	Phage-related minor tail protein	NA
UHGV-0208950_21	eggNOG-mapper	1232452.BAIB02000007_gene1616	phage tail tape measure protein	NA
UHGV-0208950_21	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0208950_21	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0208950_22	PHROG	phrog_709	NA	unknown function
UHGV-0208950_22	eggNOG-mapper	411471.SUBVAR_05858	NA	NA
UHGV-0208950_23	PHROG	phrog_88	major tail protein	tail
UHGV-0208950_23	UniRef90	UniRef90_A0A8J6P949	Phage tail protein	NA
UHGV-0208950_23	eggNOG-mapper	411471.SUBVAR_05857	phage major tail protein, phi13 family	NA
UHGV-0208950_23	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0208950_23	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0208950_24	PHROG	phrog_78	tail terminator	connector
UHGV-0208950_24	UniRef90	UniRef90_U2SBX3	HTH merR-type domain-containing protein	NA
UHGV-0208950_24	eggNOG-mapper	1226322.HMPREF1545_00120	NA	NA
UHGV-0208950_24	Structural annotation	PF20765	NA	NA
UHGV-0208950_25	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0208950_25	UniRef90	UniRef90_A0A8J6PH82	HK97 gp10 family phage protein	NA
UHGV-0208950_25	eggNOG-mapper	411471.SUBVAR_05855	NA	NA
UHGV-0208950_25	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0208950_25	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0208950_26	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0208950_26	UniRef90	UniRef90_A0A8J6P6R3	Phage head-tail adapter protein	NA
UHGV-0208950_26	eggNOG-mapper	411471.SUBVAR_05854	NA	NA
UHGV-0208950_26	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0208950_27	PHROG	phrog_5223	neck protein	connector
UHGV-0208950_27	UniRef90	UniRef90_A0A8J6P3F9	Phage gp6-like head-tail connector protein	NA
UHGV-0208950_27	eggNOG-mapper	411471.SUBVAR_05853	NA	NA
UHGV-0208950_27	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0208950_27	Structural annotation	TIGR01560	NA	NA
UHGV-0208950_28	eggNOG-mapper	1121344.JHZO01000007_gene2118	S-layer domain-containing protein	NA
UHGV-0208950_28	COG	COG5492	NA	NA
UHGV-0208950_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-0208950_29	UniRef90	UniRef90_A0A8J6P3N1	Phage major capsid protein	NA
UHGV-0208950_29	eggNOG-mapper	445975.COLSTE_02162	Phage capsid family	NA
UHGV-0208950_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0208950_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0208950_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0208950_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0208950_30	KOfam	K06904	NA	NA
UHGV-0208950_30	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0208950_30	UniRef90	UniRef90_A0A8J6PCV7	HK97 family phage prohead protease	NA
UHGV-0208950_30	eggNOG-mapper	1321814.HMPREF9089_00929	Caudovirus prohead serine protease	NA
UHGV-0208950_30	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0208950_30	COG	COG3740	Phage head maturation protease	NA
UHGV-0208950_30	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0208950_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-0208950_31	UniRef90	UniRef90_A0A8J6PFS2	Phage portal protein	NA
UHGV-0208950_31	eggNOG-mapper	411471.SUBVAR_05850	Phage portal protein	NA
UHGV-0208950_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0208950_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0208950_31	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0208950_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0208950_33	UniRef90	UniRef90_A0A8J6TY49	Terminase large subunit	NA
UHGV-0208950_33	eggNOG-mapper	411471.SUBVAR_05848	large subunit	NA
UHGV-0208950_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0208950_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0208950_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0208950_33	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0208950_34	PHROG	phrog_1066	NA	unknown function
UHGV-0208950_34	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-0208950_34	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0208950_36	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0208950_36	UniRef90	UniRef90_A0A8J6TW61	HNH endonuclease	NA
UHGV-0208950_36	eggNOG-mapper	887929.HMP0721_1270	HNH nucleases	NA
UHGV-0208950_36	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0208950_36	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0208950_37	PHROG	phrog_11237	NA	unknown function
UHGV-0208950_37	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-0208950_39	UniRef90	UniRef90_UPI000E489044	membrane lipoprotein lipid attachment site-containing protein	NA
UHGV-0208950_43	UniRef90	UniRef90_A0A8J6PM04	NA	NA
UHGV-0208950_43	Pfam	PF04448	NA	DUF551
UHGV-0208950_43	Structural annotation	NF041588	NA	NA
UHGV-0208950_45	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0208950_45	UniRef90	UniRef90_A0A413FWV3	NA	NA
UHGV-0208950_45	eggNOG-mapper	1094556.MCY_01183	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0208950_45	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0208950_45	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0208950_45	Structural annotation	PF18909	NA	NA
UHGV-0208950_46	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0208950_46	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0208950_46	UniRef90	UniRef90_UPI000B8B33F0	site-specific DNA-methyltransferase	NA
UHGV-0208950_46	eggNOG-mapper	411468.CLOSCI_00299	DNA methylase	NA
UHGV-0208950_46	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0208950_46	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0208950_46	COG	COG0863	DNA modification methylase	NA
UHGV-0208950_46	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0208950_50	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0208950_50	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0208950_50	UniRef90	UniRef90_A0A1C5RKL7	DNA repair protein RadA	NA
UHGV-0208950_50	eggNOG-mapper	476272.RUMHYD_02834	NA	NA
UHGV-0208950_50	Pfam	PF13481	AAA domain	AAA_25
UHGV-0208950_50	COG	COG0305	Replicative DNA helicase	NA
UHGV-0208950_50	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0208950_51	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0208950_51	eggNOG-mapper	428127.EUBDOL_01512	DnaD domain protein	NA
UHGV-0208950_51	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0208950_52	PHROG	phrog_18107	NA	unknown function
UHGV-0208950_52	eggNOG-mapper	1449050.JNLE01000003_gene3912	NA	NA
UHGV-0208950_52	Structural annotation	PF05037	NA	NA
UHGV-0208950_53	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0208950_53	UniRef90	UniRef90_UPI00058FD242	AAA family ATPase	NA
UHGV-0208950_53	eggNOG-mapper	1345695.CLSA_c30180	AAA domain	NA
UHGV-0208950_53	Pfam	PF13479	AAA domain	AAA_24
UHGV-0208950_53	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0208950	Yes	32,380 bps	42.92%	100.00%	0.9740
UHGV-1295418	No	13,528 bps	43.06%	45.17%	0.9823
UHGV-0390147	No	13,227 bps	43.28%	44.00%	0.9813