vOTU-048433

Overview

vOTU representative UHGV-0209072

No. of genomes 5

Genome length 37,335 bps

Completeness 100.00% (complete)

Host Enterococcus faecalis

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-048433
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00011 › vSUBFAM-01151 › vGENUS-03871 › vSUBGEN-04223 › vOTU-048433
Host taxonomy	Bacteria › Firmicutes › Bacilli › Lactobacillales › Enterococcaceae › Enterococcus › Enterococcus faecalis
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0209072
BioSample	SAMN12237098
Genome length	37,335 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	57
CDS density	93.00%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0209072_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0209072_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0209072_1	UniRef90	UniRef90_R3GR76	HTH cro/C1-type domain-containing protein	NA
UHGV-0209072_1	eggNOG-mapper	565664.EFXG_02685	Helix-turn-helix XRE-family like proteins	NA
UHGV-0209072_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0209072_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0209072_1	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0209072_2	PHROG	phrog_87	metallo-protease	other
UHGV-0209072_2	UniRef90	UniRef90_R3GRL5	Peptidase_M78 domain-containing protein	NA
UHGV-0209072_2	eggNOG-mapper	315749.Bcer98_2970	NA	NA
UHGV-0209072_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0209072_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0209072_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0209072_3	KOfam	K14059	int; integrase	NA
UHGV-0209072_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0209072_3	UniRef90	UniRef90_R3JGL5	Tyr recombinase domain-containing protein	NA
UHGV-0209072_3	eggNOG-mapper	1158604.I591_01805	Belongs to the 'phage' integrase family	NA
UHGV-0209072_3	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0209072_3	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0209072_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0209072_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0209072_3	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0209072_4	PHROG	phrog_6837	NA	unknown function
UHGV-0209072_4	UniRef90	UniRef90_UPI0019218B76	zinc ribbon domain-containing protein	NA
UHGV-0209072_4	eggNOG-mapper	673832.D2IYY3_9CAUD	NA	NA
UHGV-0209072_6	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0209072_6	PHROG	phrog_291	endolysin	lysis
UHGV-0209072_6	UniRef90	UniRef90_D2IYY2	Lysozyme	NA
UHGV-0209072_6	eggNOG-mapper	226185.EF_0355	and GP 10880731	NA
UHGV-0209072_6	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0209072_6	Pfam	PF01476	LysM domain	LysM
UHGV-0209072_6	COG	COG1388	LysM repeat	NA
UHGV-0209072_6	Structural annotation	PF01476, PF18697, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0209072_7	PHROG	phrog_10091	holin	lysis
UHGV-0209072_7	UniRef90	UniRef90_D2IZV4	Holin	NA
UHGV-0209072_7	eggNOG-mapper	673837.D2IZV4_9CAUD	Bacteriophage holin	NA
UHGV-0209072_7	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0209072_7	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0209072_8	PHROG	phrog_5620	NA	unknown function
UHGV-0209072_9	PHROG	phrog_1665	NA	unknown function
UHGV-0209072_9	UniRef90	UniRef90_UPI00115D8E74	BppU family phage baseplate upper protein	NA
UHGV-0209072_9	eggNOG-mapper	673832.D2IYX9_9CAUD	NA	NA
UHGV-0209072_9	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0209072_9	Structural annotation	PF10651	NA	NA
UHGV-0209072_10	PHROG	phrog_3095	tail protein with endopeptidase activity	other
UHGV-0209072_10	UniRef90	UniRef90_R3J5A5	Prophage_tail domain-containing protein	NA
UHGV-0209072_10	eggNOG-mapper	673832.D2IYX8_9CAUD	peptidoglycan catabolic process	NA
UHGV-0209072_10	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0209072_10	Structural annotation	PF06605, PF18994, PF18463, TIGR01665, COG4926	NA	NA
UHGV-0209072_11	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0209072_11	UniRef90	UniRef90_D2IYX7	Tail protein	NA
UHGV-0209072_11	eggNOG-mapper	673832.D2IYX7_9CAUD	Phage tail protein	NA
UHGV-0209072_11	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0209072_11	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0209072_12	PHROG	phrog_1204	tail protein	tail
UHGV-0209072_12	UniRef90	UniRef90_D2IYX6	PblA-like tail protein	NA
UHGV-0209072_12	eggNOG-mapper	673832.D2IYX6_9CAUD	transmembrane transport	NA
UHGV-0209072_12	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0209072_12	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0209072_12	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0209072_13	PHROG	phrog_2567	NA	unknown function
UHGV-0209072_14	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0209072_14	UniRef90	UniRef90_A0A380IMK2	NA	NA
UHGV-0209072_14	eggNOG-mapper	673835.D2IZH0_9CAUD	Pfam:Phage_TAC_12	NA
UHGV-0209072_14	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0209072_14	Structural annotation	PF12363	NA	NA
UHGV-0209072_15	PHROG	phrog_4417	NA	unknown function
UHGV-0209072_15	UniRef90	UniRef90_K6SGT4	NA	NA
UHGV-0209072_15	eggNOG-mapper	673832.D2IYX3_9CAUD	NA	NA
UHGV-0209072_15	Structural annotation	PF03414, NF041524, COG1442	NA	NA
UHGV-0209072_16	PHROG	phrog_238	major tail protein	tail
UHGV-0209072_16	UniRef90	UniRef90_D2IYX2	Major tail protein	NA
UHGV-0209072_16	eggNOG-mapper	673832.D2IYX2_9CAUD	Phage major tail protein 2	NA
UHGV-0209072_16	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0209072_16	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0209072_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0209072_17	PHROG	phrog_176	tail terminator	connector
UHGV-0209072_17	eggNOG-mapper	673832.D2IYX1_9CAUD	NA	NA
UHGV-0209072_17	Structural annotation	PF06141, MF_00281, COG0016	NA	NA
UHGV-0209072_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0209072_18	UniRef90	UniRef90_UPI000BF0CFA6	HK97 gp10 family phage protein	NA
UHGV-0209072_18	eggNOG-mapper	673832.D2IYX0_9CAUD	exonuclease activity	NA
UHGV-0209072_18	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0209072_18	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0209072_19	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0209072_19	eggNOG-mapper	1158614.I592_02265	NA	NA
UHGV-0209072_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0209072_20	PHROG	phrog_37000	NA	unknown function
UHGV-0209072_20	UniRef90	UniRef90_UPI000F04D0FD	phage head-tail connector protein	NA
UHGV-0209072_20	eggNOG-mapper	673832.D2IYW8_9CAUD	Phage gp6-like head-tail connector protein	NA
UHGV-0209072_20	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0209072_21	PHROG	phrog_544	major head protein	head and packaging
UHGV-0209072_21	UniRef90	UniRef90_UPI000F4E0CC4	phage capsid protein	NA
UHGV-0209072_21	eggNOG-mapper	673832.D2IYW7_9CAUD	NA	NA
UHGV-0209072_21	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0209072_22	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0209072_22	UniRef90	UniRef90_D2IYW6	Scaffold protein	NA
UHGV-0209072_22	eggNOG-mapper	673832.D2IYW6_9CAUD	aminoacyl-tRNA ligase activity	NA
UHGV-0209072_22	Pfam	PF14265	NA	DUF4355
UHGV-0209072_22	Structural annotation	PF14265	NA	NA
UHGV-0209072_23	PHROG	phrog_1233	NA	unknown function
UHGV-0209072_23	eggNOG-mapper	936375.HMPREF1152_1074	NA	NA
UHGV-0209072_24	PHROG	phrog_8550	NA	unknown function
UHGV-0209072_25	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0209072_25	UniRef90	UniRef90_D2IYW4	Phage head protein	NA
UHGV-0209072_25	eggNOG-mapper	673832.D2IYW4_9CAUD	Phage Mu protein F like protein	NA
UHGV-0209072_25	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0209072_25	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0209072_25	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0209072_26	PHROG	phrog_8955	NA	unknown function
UHGV-0209072_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-0209072_27	UniRef90	UniRef90_D2IZF6	Portal protein	NA
UHGV-0209072_27	eggNOG-mapper	673835.D2IZF6_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0209072_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0209072_27	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0209072_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0209072_28	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0209072_28	UniRef90	UniRef90_D2J053	Terminase large subunit	NA
UHGV-0209072_28	eggNOG-mapper	673839.D2J053_9CAUD	NA	NA
UHGV-0209072_28	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-0209072_29	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0209072_29	UniRef90	UniRef90_D2IZL8	Terminase small subunit	NA
UHGV-0209072_29	eggNOG-mapper	673835.D2IZF4_9CAUD	endonuclease activity	NA
UHGV-0209072_29	Structural annotation	PF07141	NA	NA
UHGV-0209072_30	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0209072_30	UniRef90	UniRef90_D2IZS6	Transcriptional regulator	NA
UHGV-0209072_30	eggNOG-mapper	1201292.DR75_1521	ArpU family	NA
UHGV-0209072_30	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0209072_30	Structural annotation	PF05263, MF_00674, TIGR01637, COG1191	NA	NA
UHGV-0209072_32	PHROG	phrog_1335	NA	unknown function
UHGV-0209072_33	PHROG	phrog_121	NA	unknown function
UHGV-0209072_33	UniRef90	UniRef90_UPI000666B1A9	NA	NA
UHGV-0209072_33	eggNOG-mapper	1300150.EMQU_2281	NA	NA
UHGV-0209072_33	Pfam	PF07852	NA	DUF1642
UHGV-0209072_33	Structural annotation	PF07852	NA	NA
UHGV-0209072_34	PHROG	phrog_4615	NA	unknown function
UHGV-0209072_35	PHROG	phrog_6513	NA	unknown function
UHGV-0209072_36	PHROG	phrog_23115	NA	unknown function
UHGV-0209072_36	eggNOG-mapper	1201292.DR75_1650	NA	NA
UHGV-0209072_37	PHROG	phrog_1150	NA	unknown function
UHGV-0209072_37	UniRef90	UniRef90_UPI000E07B593	Lar family restriction alleviation protein	NA
UHGV-0209072_37	eggNOG-mapper	1201292.DR75_1651	NA	NA
UHGV-0209072_38	PHROG	phrog_98	NA	unknown function
UHGV-0209072_38	UniRef90	UniRef90_UPI00032E4B14	YopX family protein	NA
UHGV-0209072_38	eggNOG-mapper	1201292.DR75_1652	YopX protein	NA
UHGV-0209072_38	Pfam	PF09643	YopX protein	YopX
UHGV-0209072_38	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0209072_38	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0209072_39	PHROG	phrog_2668	NA	unknown function
UHGV-0209072_39	UniRef90	UniRef90_E2YRW7	Methylase_S domain-containing protein	NA
UHGV-0209072_39	eggNOG-mapper	1201292.DR75_1653	Type I restriction modification DNA specificity domain	NA
UHGV-0209072_39	Structural annotation	PF01420, COG0732	NA	NA
UHGV-0209072_40	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0209072_40	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0209072_40	UniRef90	UniRef90_A0A7H0FN16	N-6 DNA methylase	NA
UHGV-0209072_40	eggNOG-mapper	1201292.DR75_1654	type I restriction-modification system	NA
UHGV-0209072_40	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0209072_40	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0209072_40	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0209072_40	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0209072_41	PHROG	phrog_2882	DNA methyltransferase	other
UHGV-0209072_41	UniRef90	UniRef90_UPI0018E8AFA7	DNA methyltransferase	NA
UHGV-0209072_41	eggNOG-mapper	1231377.C426_1711	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0209072_41	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0209072_41	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0209072_41	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0209072_42	PHROG	phrog_9838	NA	unknown function
UHGV-0209072_43	PHROG	phrog_1799	NA	unknown function
UHGV-0209072_43	eggNOG-mapper	1158604.I591_01784	NA	NA
UHGV-0209072_44	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0209072_44	PHROG	phrog_24390	NA	unknown function
UHGV-0209072_44	UniRef90	UniRef90_A0A125W4C7	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0209072_44	eggNOG-mapper	673832.D2IYU2_9CAUD	magnesium ion binding	NA
UHGV-0209072_44	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0209072_44	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0209072_45	PHROG	phrog_28554	MazG-like pyrophosphatase	other
UHGV-0209072_45	UniRef90	UniRef90_R3H4X5	MazG domain-containing protein	NA
UHGV-0209072_45	eggNOG-mapper	673832.D2IYU1_9CAUD	sequence-specific DNA binding	NA
UHGV-0209072_45	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0209072_45	Structural annotation	PF12643, MF_01020, NF001613, COG0140	NA	NA
UHGV-0209072_46	PHROG	phrog_154	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0209072_46	UniRef90	UniRef90_A0A7G8ZYV2	NA	NA
UHGV-0209072_46	eggNOG-mapper	1140001.I571_01721	NA	NA
UHGV-0209072_46	Structural annotation	PF17399	NA	NA
UHGV-0209072_47	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0209072_47	UniRef90	UniRef90_UPI000FFF549C	helix-turn-helix domain-containing protein	NA
UHGV-0209072_47	eggNOG-mapper	226185.EF_2027	Helix-turn-helix domain	NA
UHGV-0209072_47	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0209072_47	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0209072_47	Structural annotation	PF13730, MF_01909, NF040939, COG1846	NA	NA
UHGV-0209072_49	PHROG	phrog_398	NA	unknown function
UHGV-0209072_49	UniRef90	UniRef90_UPI000CF11369	putative HNHc nuclease	NA
UHGV-0209072_49	eggNOG-mapper	1201292.DR75_1532	Putative HNHc nuclease	NA
UHGV-0209072_49	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0209072_49	Structural annotation	PF16784	NA	NA
UHGV-0209072_50	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0209072_50	UniRef90	UniRef90_UPI00035334DB	ERF family protein	NA
UHGV-0209072_50	eggNOG-mapper	1462527.CCDM010000010_gene489	ERF superfamily	NA
UHGV-0209072_50	Pfam	PF04404	ERF superfamily	ERF
UHGV-0209072_50	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0209072_51	PHROG	phrog_33316	NA	unknown function
UHGV-0209072_52	PHROG	phrog_21427	NA	unknown function
UHGV-0209072_53	PHROG	phrog_1592	NA	unknown function
UHGV-0209072_54	PHROG	phrog_1655	NA	unknown function
UHGV-0209072_54	eggNOG-mapper	1300150.EMQU_2298	NA	NA
UHGV-0209072_55	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0209072_55	UniRef90	UniRef90_D2IYT0	Anti-repressor protein	NA
UHGV-0209072_55	eggNOG-mapper	673832.D2IYT0_9CAUD	DNA binding	NA
UHGV-0209072_55	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0209072_55	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0209072_55	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0209072_55	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0209072_56	PHROG	phrog_668	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0209072_56	UniRef90	UniRef90_UPI000660F8A0	helix-turn-helix domain-containing protein	NA
UHGV-0209072_56	eggNOG-mapper	1158604.I591_01796	NA	NA
UHGV-0209072_56	Structural annotation	PF09035, NF040990, COG3311	NA	NA
UHGV-0209072_57	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0209072_57	UniRef90	UniRef90_V7ZNY6	XRE family transcriptional regulator	NA
UHGV-0209072_57	eggNOG-mapper	1158604.I591_01800	Helix-turn-helix XRE-family like proteins	NA
UHGV-0209072_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0209072_57	Structural annotation	PF21291, NF041951, COG3655	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0209072	Yes	37,335 bps	34.81%	100.00%	0.9744
UHGV-1520891	No	25,657 bps	34.84%	60.67%	0.9672
UHGV-1688220	No	20,090 bps	34.53%	47.36%	0.9740
UHGV-1336110	No	11,614 bps	35.35%	27.42%	0.9622
UHGV-0410290	No	11,295 bps	35.48%	26.66%	0.9554