vOTU-048488

Overview

vOTU representative UHGV-0209493

No. of genomes 1

Genome length 43,131 bps

Completeness 100.00% (complete)

Host ERR7738657 bin.30

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-048488
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 › vSUBFAM-05889 › vGENUS-13781 › vSUBGEN-22459 › vOTU-048488
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Christensenellales › CAG-74 › RUG563 › ERR7738657 bin.30
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0209493
BioSample	SAMN09781780
Genome length	43,131 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	53
CDS density	91.17%
tRNA count	1
Integrase	Yes
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0209493_4	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0209493_4	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0209493_4	Structural annotation	PF00196, MF_00674, TIGR02985, COG2771	NA	NA
UHGV-0209493_5	eggNOG-mapper	411470.RUMGNA_00254	NA	NA
UHGV-0209493_7	UniRef90	UniRef90_UPI001B1EC1EA	SH3 domain-containing protein	NA
UHGV-0209493_7	eggNOG-mapper	742735.HMPREF9467_01314	NA	NA
UHGV-0209493_7	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0209493_7	Structural annotation	PF18342, PF05382, NF040670, COG4991	NA	NA
UHGV-0209493_8	UniRef90	UniRef90_A0A8D9UHK2	Chitin oligosaccharide deacetylase	NA
UHGV-0209493_8	eggNOG-mapper	1154860.SAG0136_08155	NA	NA
UHGV-0209493_8	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0209493_8	Structural annotation	PF14600	NA	NA
UHGV-0209493_11	PHROG	phrog_10485	NA	unknown function
UHGV-0209493_11	eggNOG-mapper	314262.MED193_18919	tail collar domain protein	NA
UHGV-0209493_11	Pfam	PF12789	Phage tail repeat like	PTR
UHGV-0209493_11	COG	COG4675	Phage tail collar domain	NA
UHGV-0209493_13	PHROG	phrog_22978	NA	unknown function
UHGV-0209493_13	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0209493_14	UniRef90	UniRef90_R6HIP3	PG_binding_1 domain-containing protein	NA
UHGV-0209493_14	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0209493_15	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0209493_15	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0209493_15	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0209493_16	PHROG	phrog_30034	NA	unknown function
UHGV-0209493_16	UniRef90	UniRef90_A0A1Y4WAL9	Chitinase	NA
UHGV-0209493_16	eggNOG-mapper	1226322.HMPREF1545_04028	NA	NA
UHGV-0209493_16	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0209493_16	Structural annotation	PF14600, COG3979	NA	NA
UHGV-0209493_17	PHROG	phrog_19280	NA	unknown function
UHGV-0209493_17	UniRef90	UniRef90_UPI00156F1082	NA	NA
UHGV-0209493_17	eggNOG-mapper	1160721.RBI_I01569	NA	NA
UHGV-0209493_17	Pfam	PF19789	NA	DUF6273
UHGV-0209493_17	Structural annotation	PF19789	NA	NA
UHGV-0209493_18	PHROG	phrog_12105	NA	unknown function
UHGV-0209493_18	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0209493_20	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0209493_20	UniRef90	UniRef90_A0A3D2YEJ7	N4-gp56 family major capsid protein	NA
UHGV-0209493_20	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0209493_20	Pfam	PF13252	NA	DUF4043
UHGV-0209493_20	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0209493_20	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0209493_21	PHROG	phrog_13908	NA	unknown function
UHGV-0209493_21	UniRef90	UniRef90_A0A174CZ20	Predicted ribosomal protein	NA
UHGV-0209493_21	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0209493_22	PHROG	phrog_156	portal protein	head and packaging
UHGV-0209493_22	UniRef90	UniRef90_A0A8D9UH10	Portal protein	NA
UHGV-0209493_22	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0209493_22	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0209493_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0209493_23	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0209493_23	UniRef90	UniRef90_UPI0006875436	phage terminase large subunit	NA
UHGV-0209493_23	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0209493_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0209493_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0209493_23	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0209493_28	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0209493_29	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0209493_29	eggNOG-mapper	536233.CLO_3655	NA	NA
UHGV-0209493_29	Structural annotation	PF21578	NA	NA
UHGV-0209493_32	PHROG	phrog_21498	NA	unknown function
UHGV-0209493_32	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0209493_32	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0209493_32	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0209493_32	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0209493_33	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0209493_33	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0209493_33	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0209493_33	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0209493_33	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0209493_34	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0209493_34	UniRef90	UniRef90_UPI00189BA758	DNA cytosine methyltransferase	NA
UHGV-0209493_34	eggNOG-mapper	397290.C810_01487	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0209493_34	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0209493_34	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0209493_36	UniRef90	UniRef90_UPI000704FF9F	helix-turn-helix transcriptional regulator	NA
UHGV-0209493_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0209493_36	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0209493_37	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0209493_37	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0209493_37	UniRef90	UniRef90_A0A6G6IYB8	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0209493_37	eggNOG-mapper	1437882.AZRU01000034_gene470	Endodeoxyribonuclease RusA	NA
UHGV-0209493_37	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0209493_37	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0209493_37	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0209493_38	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0209493_38	UniRef90	UniRef90_A0A098AU96	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes	NA
UHGV-0209493_38	eggNOG-mapper	1235800.C819_02256	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0209493_38	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0209493_38	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0209493_38	Structural annotation	PF01507, MF_00063, TIGR00434, COG0175	NA	NA
UHGV-0209493_40	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0209493_40	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0209493_40	UniRef90	UniRef90_A0A7C1ENX2	Single-stranded DNA-binding protein	NA
UHGV-0209493_40	eggNOG-mapper	926550.CLDAP_14930	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0209493_40	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0209493_40	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0209493_40	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0209493_48	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0209493_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0209493_48	UniRef90	UniRef90_G9RV47	HTH cro/C1-type domain-containing protein	NA
UHGV-0209493_48	eggNOG-mapper	665956.HMPREF1032_00148	NA	NA
UHGV-0209493_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0209493_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0209493_48	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0209493_52	UniRef90	UniRef90_A0A1C6HD04	Helix-turn-helix	NA
UHGV-0209493_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0209493_52	Structural annotation	PF13443, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0209493_53	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0209493_53	PHROG	phrog_95	integrase	integration and excision
UHGV-0209493_53	UniRef90	UniRef90_UPI00195A9A00	recombinase family protein	NA
UHGV-0209493_53	eggNOG-mapper	697281.Mahau_2563	resolvase	NA
UHGV-0209493_53	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0209493_53	Pfam	PF07508	Recombinase	Recombinase
UHGV-0209493_53	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0209493_53	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0209493_53	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0209493	Yes	43,131 bps	60.55%	100.00%	0.9736