vOTU-048489

Overview

vOTU representative UHGV-0209495

No. of genomes 3

Genome length 35,909 bps

Completeness 100.00% (complete)

Host Ruminococcus C sp000433635

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-048489
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 › vSUBFAM-00197 › vGENUS-01987 › vSUBGEN-22460 › vOTU-048489
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Ruminococcus C › Ruminococcus C sp000433635
Host range breadth	Species
Host prediction method	PHIST
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0209495
BioSample	SAMN09781780
Genome length	35,909 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	57
CDS density	92.53%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0209495_1	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0209495_1	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0209495_1	UniRef90	UniRef90_R5VJF6	Single-stranded DNA-binding protein	NA
UHGV-0209495_1	eggNOG-mapper	1514668.JOOA01000002_gene3349	Single-stranded DNA-binding protein	NA
UHGV-0209495_1	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0209495_1	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0209495_1	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0209495_1	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0209495_1	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0209495_2	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0209495_2	UniRef90	UniRef90_A0A352DNR2	ERCC4 domain-containing protein	NA
UHGV-0209495_2	eggNOG-mapper	1499683.CCFF01000005_gene55	ERCC4 domain	NA
UHGV-0209495_2	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0209495_2	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0209495_3	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0209495_3	UniRef90	UniRef90_R5V6A9	Erf family protein	NA
UHGV-0209495_3	eggNOG-mapper	1329250.WOSG25_420010	ERF superfamily	NA
UHGV-0209495_3	Pfam	PF04404	ERF superfamily	ERF
UHGV-0209495_3	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0209495_9	eggNOG-mapper	97139.C824_00678	NA	NA
UHGV-0209495_14	Structural annotation	PF10743	NA	NA
UHGV-0209495_15	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0209495_15	UniRef90	UniRef90_A0A352TI38	Bro-N domain-containing protein	NA
UHGV-0209495_15	eggNOG-mapper	508419.F8J196_9CAUD	DNA binding	NA
UHGV-0209495_15	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0209495_15	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0209495_17	UniRef90	UniRef90_A6TLJ6	NA	NA
UHGV-0209495_17	eggNOG-mapper	293826.Amet_0839	NA	NA
UHGV-0209495_17	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0209495_18	PHROG	phrog_21028	NA	unknown function
UHGV-0209495_18	eggNOG-mapper	1235799.C818_04193	NA	NA
UHGV-0209495_18	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-0209495_20	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-0209495_20	UniRef90	UniRef90_A0A1C6EMZ2	Phage anti-repressor protein	NA
UHGV-0209495_20	eggNOG-mapper	272623.L39625	ORF6C domain	NA
UHGV-0209495_20	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0209495_20	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0209495_20	Structural annotation	PF10543, PF03374, TIGR02681, COG3646	NA	NA
UHGV-0209495_21	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0209495_22	PHROG	phrog_5079	NA	unknown function
UHGV-0209495_22	eggNOG-mapper	1204534.J9QDX8_9CAUD	NA	NA
UHGV-0209495_23	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0209495_23	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0209495_23	UniRef90	UniRef90_A0A3C0IJA8	HTH cro/C1-type domain-containing protein	NA
UHGV-0209495_23	eggNOG-mapper	401526.TcarDRAFT_1271	Peptidase S24-like	NA
UHGV-0209495_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0209495_23	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0209495_23	Structural annotation	PF01381, MF_02017, NF041951, COG1476	NA	NA
UHGV-0209495_24	KOfam	K07705	lytT, lytR; two-component system, LytTR family, response regulator LytT	NA
UHGV-0209495_24	PHROG	phrog_8810	NA	unknown function
UHGV-0209495_24	UniRef90	UniRef90_A0A352TI42	Stage 0 sporulation protein A homolog	NA
UHGV-0209495_24	eggNOG-mapper	457412.RSAG_02813	LytTr DNA-binding domain	NA
UHGV-0209495_24	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0209495_24	Pfam	PF04397	LytTr DNA-binding domain	LytTR
UHGV-0209495_24	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-0209495_25	KOfam	K14059	int; integrase	NA
UHGV-0209495_25	PHROG	phrog_1	integrase	integration and excision
UHGV-0209495_25	UniRef90	UniRef90_A0A7X9GK55	Site-specific integrase	NA
UHGV-0209495_25	eggNOG-mapper	1007096.BAGW01000006_gene1761	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0209495_25	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0209495_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0209495_25	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0209495_25	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0209495_26	KOfam	K07273	acm; lysozyme	NA
UHGV-0209495_26	PHROG	phrog_291	endolysin	lysis
UHGV-0209495_26	UniRef90	UniRef90_A0A3D5KVU8	Peptidase_M15_3 domain-containing protein	NA
UHGV-0209495_26	eggNOG-mapper	1341157.RF007C_02545	hydrolase, family 25	NA
UHGV-0209495_26	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0209495_26	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0209495_26	COG	COG3108	NA	NA
UHGV-0209495_26	Structural annotation	PF01183, PF08291, NF007557, COG3757, COG3108	NA	NA
UHGV-0209495_27	PHROG	phrog_199	holin	lysis
UHGV-0209495_27	UniRef90	UniRef90_A0A352TKQ2	Holin	NA
UHGV-0209495_27	eggNOG-mapper	641112.ACOK01000108_gene1813	Bacteriophage holin family	NA
UHGV-0209495_27	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0209495_27	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0209495_27	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0209495_27	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0209495_28	Structural annotation	PF11195	NA	NA
UHGV-0209495_29	PHROG	phrog_35590	NA	unknown function
UHGV-0209495_29	eggNOG-mapper	411473.RUMCAL_00613	Collagen triple helix repeat (20 copies)	NA
UHGV-0209495_29	COG	COG2931	Ca2+-binding protein, RTX toxin-related	NA
UHGV-0209495_29	Structural annotation	PF07675, NF038128	NA	NA
UHGV-0209495_30	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0209495_30	PHROG	phrog_25979	NA	unknown function
UHGV-0209495_30	eggNOG-mapper	411473.RUMCAL_00613	Collagen triple helix repeat (20 copies)	NA
UHGV-0209495_30	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0209495_30	COG	COG2931	Ca2+-binding protein, RTX toxin-related	NA
UHGV-0209495_30	Structural annotation	PF09294	NA	NA
UHGV-0209495_31	PHROG	phrog_18805	NA	unknown function
UHGV-0209495_31	UniRef90	UniRef90_A0A3C0IHR9	Cell surface protein (Fragment)	NA
UHGV-0209495_31	eggNOG-mapper	411473.RUMCAL_03179	Leucine rich repeats (6 copies)	NA
UHGV-0209495_31	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0209495_31	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-0209495_31	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0209495_33	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0209495_33	eggNOG-mapper	1051501.AYTL01000027_gene761	Phage tail tape measure protein	NA
UHGV-0209495_33	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0209495_33	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0209495_33	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0209495_33	COG	COG5283	Phage-related tail protein	NA
UHGV-0209495_33	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0209495_34	PHROG	phrog_3558	tail protein	tail
UHGV-0209495_34	COG	COG4926	Phage-related protein	NA
UHGV-0209495_34	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0209495_35	UniRef90	UniRef90_UPI001D005450	phage tail family protein	NA
UHGV-0209495_35	eggNOG-mapper	1123075.AUDP01000020_gene1523	phage tail	NA
UHGV-0209495_35	COG	COG4722	Phage-related protein YomH	NA
UHGV-0209495_36	PHROG	phrog_7423	NA	unknown function
UHGV-0209495_36	UniRef90	UniRef90_UPI0008A1BA71	phenylalanine racemase	NA
UHGV-0209495_36	eggNOG-mapper	1347392.CCEZ01000005_gene1243	NA	NA
UHGV-0209495_37	PHROG	phrog_2115	tail protein	tail
UHGV-0209495_37	Structural annotation	PF11836	NA	NA
UHGV-0209495_38	PHROG	phrog_1407	major tail protein	tail
UHGV-0209495_38	UniRef90	UniRef90_UPI001D0042ED	phage major tail protein, TP901-1 family	NA
UHGV-0209495_38	eggNOG-mapper	936154.STP_1264	Phage tail tube protein	NA
UHGV-0209495_38	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0209495_38	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0209495_38	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0209495_38	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0209495_39	PHROG	phrog_176	tail terminator	connector
UHGV-0209495_39	UniRef90	UniRef90_UPI001D024781	NA	NA
UHGV-0209495_39	eggNOG-mapper	1235792.C808_05344	NA	NA
UHGV-0209495_39	Pfam	PF16807	NA	DUF5072
UHGV-0209495_39	Structural annotation	PF16807, COG5003	NA	NA
UHGV-0209495_40	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0209495_40	UniRef90	UniRef90_UPI0019673462	HK97 gp10 family phage protein	NA
UHGV-0209495_40	eggNOG-mapper	1125712.HMPREF1316_1514	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0209495_40	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0209495_40	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0209495_41	UniRef90	UniRef90_C5WIA4	NA	NA
UHGV-0209495_41	eggNOG-mapper	1232430.CAVG010000113_gene1018	NA	NA
UHGV-0209495_41	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0209495_42	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0209495_42	UniRef90	UniRef90_A0A1I5G9Z5	Phage gp6-like head-tail connector protein	NA
UHGV-0209495_42	eggNOG-mapper	936154.STP_1288	NA	NA
UHGV-0209495_42	Structural annotation	PF05135	NA	NA
UHGV-0209495_43	PHROG	phrog_544	major head protein	head and packaging
UHGV-0209495_43	UniRef90	UniRef90_R9C6R9	NA	NA
UHGV-0209495_43	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0209495_43	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0209495_44	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0209495_44	UniRef90	UniRef90_UPI001D01A578	NA	NA
UHGV-0209495_44	eggNOG-mapper	1235792.C808_05338	NA	NA
UHGV-0209495_44	Pfam	PF14265	NA	DUF4355
UHGV-0209495_44	Structural annotation	PF14265	NA	NA
UHGV-0209495_45	UniRef90	UniRef90_A0A8G1H9S6	Thioredoxin	NA
UHGV-0209495_45	eggNOG-mapper	1071085.KK033114_gene203	COG0526 Thiol-disulfide isomerase and thioredoxins	NA
UHGV-0209495_45	Pfam	PF00085	Thioredoxin	Thioredoxin
UHGV-0209495_45	COG	COG0526	Thiol-disulfide isomerase or thioredoxin	NA
UHGV-0209495_45	Structural annotation	PF00085, MF_01319, NF006898, COG0526	NA	NA
UHGV-0209495_46	Structural annotation	PF10827	NA	NA
UHGV-0209495_47	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0209495_47	UniRef90	UniRef90_A0A352TL16	Phage_Mu_F domain-containing protein	NA
UHGV-0209495_47	eggNOG-mapper	1235792.C808_05333	Phage Mu protein F like protein	NA
UHGV-0209495_47	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0209495_47	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0209495_47	COG	COG2369	NA	NA
UHGV-0209495_48	PHROG	phrog_64	portal protein	head and packaging
UHGV-0209495_48	UniRef90	UniRef90_UPI001D01B3D7	phage portal protein	NA
UHGV-0209495_48	eggNOG-mapper	936154.STP_1271	Phage portal protein	NA
UHGV-0209495_48	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0209495_48	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0209495_48	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0209495_49	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0209495_49	PHROG	phrog_10250	NA	unknown function
UHGV-0209495_49	UniRef90	UniRef90_UPI001D011656	PBSX family phage terminase large subunit	NA
UHGV-0209495_49	eggNOG-mapper	1329516.JPST01000014_gene657	Phage terminase, large subunit	NA
UHGV-0209495_49	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0209495_49	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0209495_49	COG	COG1783	Phage terminase large subunit	NA
UHGV-0209495_49	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0209495_50	PHROG	phrog_2412	NA	unknown function
UHGV-0209495_50	UniRef90	UniRef90_UPI0011CC13F5	stress-induced protein	NA
UHGV-0209495_50	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-0209495_50	Pfam	PF10685	Stress-induced bacterial acidophilic repeat motif	KGG
UHGV-0209495_51	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0209495_51	Structural annotation	PF04545, MF_00674, TIGR02980, COG1595	NA	NA
UHGV-0209495_53	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0209495_53	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0209495_53	UniRef90	UniRef90_A0A1H7KWC5	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	NA
UHGV-0209495_53	eggNOG-mapper	537013.CLOSTMETH_01340	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0209495_53	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0209495_53	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0209495_53	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0209495_53	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0209495_55	PHROG	phrog_13561	NA	unknown function
UHGV-0209495_55	Structural annotation	PF21441, COG5045	NA	NA
UHGV-0209495_56	Structural annotation	PF13613	NA	NA
UHGV-0209495_57	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0209495_57	UniRef90	UniRef90_S0A2V1	DNA replication protein	NA
UHGV-0209495_57	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0209495_57	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0209495_57	COG	COG3935	DNA replication protein DnaD	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0209495	Yes	35,909 bps	44.93%	100.00%	0.9739
UHGV-0175487	No	36,113 bps	44.98%	99.90%	0.9718
UHGV-2029126	No	11,562 bps	45.08%	33.14%	0.9767