vOTU-049148

Overview

vOTU representative UHGV-0219316

No. of genomes 7

Genome length 61,641 bps

Completeness 100.00% (complete)

Host Bifidobacterium longum

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-049148
Number of genomes	7
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00024 › vSUBFAM-00138 › vGENUS-00439 › vSUBGEN-27407 › vOTU-049148
Host taxonomy	Bacteria › Actinobacteriota › Actinomycetia › Actinomycetales › Bifidobacteriaceae › Bifidobacterium › Bifidobacterium longum
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0219316
BioSample	SAMN07259831
Genome length	61,641 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	96
CDS density	86.09%
tRNA count	5
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0219316_1	PHROG	phrog_881	holin	lysis
UHGV-0219316_1	UniRef90	UniRef90_B3DTW1	Phage holin-like protein	NA
UHGV-0219316_1	eggNOG-mapper	326426.Bbr_0299	Putative phage holin Dp-1	NA
UHGV-0219316_1	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0219316_2	KOfam	K07273	acm; lysozyme	NA
UHGV-0219316_2	PHROG	phrog_291	endolysin	lysis
UHGV-0219316_2	UniRef90	UniRef90_S3A344	LysM domain-containing protein	NA
UHGV-0219316_2	eggNOG-mapper	158787.BSCA_0886	Glycosyl hydrolases family 25	NA
UHGV-0219316_2	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0219316_2	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0219316_2	Pfam	PF01476	LysM domain	LysM
UHGV-0219316_2	COG	COG1388	LysM repeat	NA
UHGV-0219316_2	Structural annotation	PF01183, NF007404, COG3757, COG1388	NA	NA
UHGV-0219316_3	PHROG	phrog_4105	NA	unknown function
UHGV-0219316_3	UniRef90	UniRef90_A0A087E4C6	Phage minor structural protein	NA
UHGV-0219316_3	eggNOG-mapper	158787.BSCA_0721	NA	NA
UHGV-0219316_4	Structural annotation	PF16990, NF033675	NA	NA
UHGV-0219316_7	UniRef90	UniRef90_A0A7Y0HYI8	Transcriptional regulator	NA
UHGV-0219316_8	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0219316_8	UniRef90	UniRef90_B7GS62	Fibronectin, type III domain protein	NA
UHGV-0219316_8	eggNOG-mapper	78346.BRUM_0385	cellulase activity	NA
UHGV-0219316_8	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0219316_8	COG	COG4372	NA	NA
UHGV-0219316_8	Structural annotation	PF14594, PF00041, PF16323, NF033848, COG3500, COG3401	NA	NA
UHGV-0219316_9	Structural annotation	PF20195, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0219316_10	PHROG	phrog_305	tail length tape measure protein	tail
UHGV-0219316_10	UniRef90	UniRef90_W6EWI6	Tail measure	NA
UHGV-0219316_10	eggNOG-mapper	35760.BCHO_0831	domain protein	NA
UHGV-0219316_10	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-0219316_12	PHROG	phrog_36579	NA	unknown function
UHGV-0219316_13	PHROG	phrog_117	major tail protein	tail
UHGV-0219316_13	UniRef90	UniRef90_A0A087B693	Putative phage protein gp19	NA
UHGV-0219316_13	eggNOG-mapper	1692.BMAGN_1451	NA	NA
UHGV-0219316_13	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0219316_14	Structural annotation	PF12691	NA	NA
UHGV-0219316_15	PHROG	phrog_32608	NA	unknown function
UHGV-0219316_15	Structural annotation	PF17395	NA	NA
UHGV-0219316_16	PHROG	phrog_25853	NA	unknown function
UHGV-0219316_16	UniRef90	UniRef90_A0A0A7I3R4	Thiamine biosynthesis protein ThiS	NA
UHGV-0219316_16	eggNOG-mapper	1692.BMAGN_1448	NA	NA
UHGV-0219316_16	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0219316_17	PHROG	phrog_36776	NA	unknown function
UHGV-0219316_17	eggNOG-mapper	1692.BMAGN_1447	NA	NA
UHGV-0219316_18	PHROG	phrog_29	major head protein	head and packaging
UHGV-0219316_18	UniRef90	UniRef90_UPI001BDD8097	major capsid protein	NA
UHGV-0219316_18	eggNOG-mapper	1692.BMAGN_1446	Phage major capsid protein E	NA
UHGV-0219316_18	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0219316_18	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0219316_19	PHROG	phrog_3583	head decoration	head and packaging
UHGV-0219316_19	UniRef90	UniRef90_A0A087B687	Bacteriophage lambda head decoration like-protein	NA
UHGV-0219316_19	eggNOG-mapper	1692.BMAGN_1445	NA	NA
UHGV-0219316_20	eggNOG-mapper	35760.BCHO_0841	NA	NA
UHGV-0219316_21	PHROG	phrog_36668	NA	unknown function
UHGV-0219316_21	UniRef90	UniRef90_W6EWN9	NA	NA
UHGV-0219316_21	eggNOG-mapper	1692.BMAGN_1443	NA	NA
UHGV-0219316_21	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0219316_22	PHROG	phrog_104	portal protein	head and packaging
UHGV-0219316_22	UniRef90	UniRef90_A0A1X2Z7Y5	Portal protein	NA
UHGV-0219316_22	eggNOG-mapper	1692.BMAGN_1442	NA	NA
UHGV-0219316_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0219316_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0219316_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0219316_23	UniRef90	UniRef90_A0A7Y0HWA7	NA	NA
UHGV-0219316_23	eggNOG-mapper	1692.BMAGN_1441	Terminase	NA
UHGV-0219316_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0219316_23	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0219316_24	PHROG	phrog_226	minor tail protein	tail
UHGV-0219316_24	UniRef90	UniRef90_A0A087B682	Putative phage protein gp1	NA
UHGV-0219316_25	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0219316_25	Structural annotation	PF01844, PF09889, MF_00649	NA	NA
UHGV-0219316_26	PHROG	phrog_333	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0219316_26	UniRef90	UniRef90_B7GS45	HNH endonuclease	NA
UHGV-0219316_26	eggNOG-mapper	1692.BMAGN_1438	HNH endonuclease	NA
UHGV-0219316_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0219316_27	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0219316_27	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0219316_27	UniRef90	UniRef90_A0A2N0THY4	HTH cro/C1-type domain-containing protein	NA
UHGV-0219316_27	eggNOG-mapper	762211.BSTEL_0947	Helix-turn-helix domain	NA
UHGV-0219316_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0219316_27	Structural annotation	PF13443, NF041951, COG1476	NA	NA
UHGV-0219316_29	PHROG	phrog_7698	endolysin	lysis
UHGV-0219316_29	UniRef90	UniRef90_B7GS44	Cpl-7 lysozyme, C-terminal domain protein	NA
UHGV-0219316_29	eggNOG-mapper	548479.HMPREF0573_11206	Pfam:Cpl-7	NA
UHGV-0219316_29	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0219316_29	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0219316_39	KOfam	K07473	dinJ; DNA-damage-inducible protein J	NA
UHGV-0219316_39	PHROG	phrog_2737	NA	unknown function
UHGV-0219316_39	UniRef90	UniRef90_A0A5M9ZK91	Type II toxin-antitoxin system antitoxin, RelB/DinJ family	NA
UHGV-0219316_39	eggNOG-mapper	762211.BSTEL_0269	RelB antitoxin	NA
UHGV-0219316_39	Pfam	PF04221	RelB antitoxin	RelB
UHGV-0219316_39	NCBIFam	TIGR02384.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-0219316_39	COG	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	NA
UHGV-0219316_40	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0219316_40	UniRef90	UniRef90_A0A0L7B5Y1	Growth inhibitor PemK	NA
UHGV-0219316_40	eggNOG-mapper	762211.BSTEL_0268	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0219316_40	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0219316_40	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0219316_43	KOfam	K07391	comM; magnesium chelatase family protein	NA
UHGV-0219316_43	UniRef90	UniRef90_A0A7X9GFG0	ATP-binding protein (Fragment)	NA
UHGV-0219316_43	eggNOG-mapper	1341695.BBOMB_0192	Magnesium chelatase, subunit ChlI C-terminal	NA
UHGV-0219316_43	Pfam	PF13541	Subunit ChlI of Mg-chelatase	ChlI
UHGV-0219316_43	COG	COG0606	Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family	NA
UHGV-0219316_47	PHROG	phrog_17662	NA	unknown function
UHGV-0219316_47	UniRef90	UniRef90_A0A1X2ZJJ5	Radical SAM domain-containing protein	NA
UHGV-0219316_47	eggNOG-mapper	642492.Clole_0962	NA	NA
UHGV-0219316_47	Structural annotation	MF_03128, TIGR02495, COG2896	NA	NA
UHGV-0219316_50	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0219316_50	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0219316_50	UniRef90	UniRef90_A0A1D7UNM8	Prophage antirepressor	NA
UHGV-0219316_50	eggNOG-mapper	702459.BBPR_0883	BRO family, N-terminal domain	NA
UHGV-0219316_50	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0219316_50	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0219316_50	COG	COG3617	Prophage antirepressor	NA
UHGV-0219316_50	Structural annotation	PF03374, PF02498, COG3645, COG3617	NA	NA
UHGV-0219316_51	PHROG	phrog_908	NA	unknown function
UHGV-0219316_51	UniRef90	UniRef90_A0A087B513	PhnA protein	NA
UHGV-0219316_51	eggNOG-mapper	1688.BCUN_0617	NA	NA
UHGV-0219316_52	eggNOG-mapper	1437605.BACT_1092	NA	NA
UHGV-0219316_53	PHROG	phrog_3926	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0219316_53	eggNOG-mapper	1437603.BMON_1163	NA	NA
UHGV-0219316_53	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0219316_55	PHROG	phrog_236	nucleotide kinase	other
UHGV-0219316_55	UniRef90	UniRef90_UPI000CD9105E	NA	NA
UHGV-0219316_55	eggNOG-mapper	35760.BCHO_0869	NA	NA
UHGV-0219316_55	Pfam	PF11753	NA	DUF3310
UHGV-0219316_56	Structural annotation	NF007260	NA	NA
UHGV-0219316_61	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0219316_61	UniRef90	UniRef90_G1FMW8	Holliday junction resolvase	NA
UHGV-0219316_61	eggNOG-mapper	1437603.BMON_0158	NA	NA
UHGV-0219316_61	Structural annotation	PF13588, COG1591	NA	NA
UHGV-0219316_71	PHROG	phrog_6504	NA	unknown function
UHGV-0219316_74	PHROG	phrog_31208	NA	unknown function
UHGV-0219316_74	AcrCatalog	cluster_17067	NA	NA
UHGV-0219316_75	Structural annotation	TIGR00739, COG1862	NA	NA
UHGV-0219316_76	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0219316_76	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0219316_76	UniRef90	UniRef90_UPI000ADB51FC	RtcB family protein	NA
UHGV-0219316_76	eggNOG-mapper	1120958.AULD01000006_gene79	tRNA-splicing ligase RtcB	NA
UHGV-0219316_76	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0219316_76	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0219316_76	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0219316_79	PHROG	phrog_14515	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0219316_79	UniRef90	UniRef90_A0A5M9ZI68	C2H2-type domain-containing protein	NA
UHGV-0219316_79	eggNOG-mapper	1437603.BMON_1161	HNH endonuclease	NA
UHGV-0219316_79	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0219316_80	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0219316_80	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0219316_80	UniRef90	UniRef90_B7GS06	Single-stranded DNA-binding protein	NA
UHGV-0219316_80	eggNOG-mapper	1217720.ALOX01000010_gene1957	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0219316_80	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0219316_80	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0219316_80	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0219316_80	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-0219316_81	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0219316_81	UniRef90	UniRef90_W6F8U4	Putative recombination protein-phage associated	NA
UHGV-0219316_81	eggNOG-mapper	363253.LI0182	ERF superfamily	NA
UHGV-0219316_81	Pfam	PF04404	ERF superfamily	ERF
UHGV-0219316_81	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0219316_82	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0219316_82	UniRef90	UniRef90_A0A0L7B667	NA	NA
UHGV-0219316_82	eggNOG-mapper	1687.BCOR_0988	NA	NA
UHGV-0219316_82	Pfam	PF12684	NA	DUF3799
UHGV-0219316_82	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0219316_83	eggNOG-mapper	1147128.BAST_0508	DivIVA protein	NA
UHGV-0219316_83	NCBIFam	TIGR03544.1	DivIVA domain-containing protein	NA
UHGV-0219316_83	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-0219316_83	Structural annotation	MF_02011	NA	NA
UHGV-0219316_85	eggNOG-mapper	888439.HMPREF9240_01816	BRO family, N-terminal domain	NA
UHGV-0219316_85	COG	COG3617	Prophage antirepressor	NA
UHGV-0219316_89	UniRef90	UniRef90_A0A0L7B6B5	DNA-binding protein	NA
UHGV-0219316_89	eggNOG-mapper	78346.BRUM_0421	NA	NA
UHGV-0219316_89	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0219316_90	PHROG	phrog_87	metallo-protease	other
UHGV-0219316_90	UniRef90	UniRef90_A0A7J5MZJ4	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0219316_90	eggNOG-mapper	1435051.BMOU_0266	NA	NA
UHGV-0219316_90	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0219316_94	PHROG	phrog_1914	NA	unknown function
UHGV-0219316_94	UniRef90	UniRef90_A0A4R0U2Y7	Peptidase_M78 domain-containing protein	NA
UHGV-0219316_94	eggNOG-mapper	1437608.BBIA_1934	IrrE N-terminal-like domain	NA
UHGV-0219316_94	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0219316_94	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0219316_94	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0219316_95	KOfam	K14059	int; integrase	NA
UHGV-0219316_95	PHROG	phrog_1	integrase	integration and excision
UHGV-0219316_95	UniRef90	UniRef90_W6F073	Phage integrase	NA
UHGV-0219316_95	eggNOG-mapper	1437603.BMON_0921	Phage integrase family	NA
UHGV-0219316_95	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0219316_95	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0219316_95	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0219316_95	Structural annotation	PF00589, PF13102, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-0219316_96	UniRef90	UniRef90_A7A599	Outer membrane insertion signal domain protein	NA
UHGV-0219316_96	eggNOG-mapper	1435051.BMOU_0750	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0219316	Yes	61,641 bps	57.75%	100.00%	0.9757
UHGV-0048816	No	35,625 bps	59.39%	58.32%	0.9785
UHGV-1463153	No	35,625 bps	59.39%	58.32%	0.9785
UHGV-1462918	No	35,545 bps	59.38%	58.19%	0.9789
UHGV-1845551	No	26,738 bps	61.56%	43.77%	0.9734
UHGV-1654210	No	21,808 bps	60.74%	35.70%	0.9798
UHGV-0357393	No	11,002 bps	54.28%	17.80%	0.9765