vOTU-049569

Overview

No. of genomes 17

Genome length 40,780 bps

Completeness 100.00% (complete)

Host Bifidobacterium pseudocatenulatum

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-049569
Number of genomes	17
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00024 › vSUBFAM-00169 › vGENUS-00807 › vSUBGEN-25029 › vOTU-049569
Host taxonomy	Bacteria › Actinobacteriota › Actinomycetia › Actinomycetales › Bifidobacteriaceae › Bifidobacterium › Bifidobacterium pseudocatenulatum
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0248171
BioSample	SAMD00002772
Genome length	40,780 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	73
CDS density	90.32%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0248171_1	PHROG	phrog_21277	terminase large subunit	head and packaging
UHGV-0248171_1	UniRef90	UniRef90_UPI0018E55D0C	terminase	NA
UHGV-0248171_1	eggNOG-mapper	1437603.BMON_0141	Terminase	NA
UHGV-0248171_1	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0248171_2	PHROG	phrog_104	portal protein	head and packaging
UHGV-0248171_2	UniRef90	UniRef90_A0A087DRQ5	Phage portal protein gp6-like protein	NA
UHGV-0248171_2	eggNOG-mapper	1437603.BMON_0140	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0248171_2	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0248171_2	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0248171_3	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-0248171_3	UniRef90	UniRef90_A0A8A9ICF6	CdiA_C domain-containing protein	NA
UHGV-0248171_3	eggNOG-mapper	1437603.BMON_0139	NA	NA
UHGV-0248171_4	PHROG	phrog_1793	head scaffolding protein	head and packaging
UHGV-0248171_4	UniRef90	UniRef90_UPI001115A562	NA	NA
UHGV-0248171_4	eggNOG-mapper	1437603.BMON_0138	NA	NA
UHGV-0248171_5	PHROG	phrog_212	major head protein	head and packaging
UHGV-0248171_5	UniRef90	UniRef90_UPI001038A13F	phage capsid protein	NA
UHGV-0248171_5	eggNOG-mapper	1437603.BMON_0137	NA	NA
UHGV-0248171_5	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0248171_6	PHROG	phrog_15682	NA	unknown function
UHGV-0248171_7	UniRef90	UniRef90_I3BBX9	Head fiber domain protein	NA
UHGV-0248171_8	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0248171_8	UniRef90	UniRef90_I3BBT3	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0248171_8	eggNOG-mapper	1437603.BMON_0136	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0248171_8	Pfam	PF09355	NA	Phage_Gp19
UHGV-0248171_8	Structural annotation	PF09355	NA	NA
UHGV-0248171_9	PHROG	phrog_13779	NA	unknown function
UHGV-0248171_9	UniRef90	UniRef90_UPI00192840F4	NA	NA
UHGV-0248171_9	eggNOG-mapper	1680.BADO_1238	NA	NA
UHGV-0248171_9	Pfam	PF19586	NA	DUF6093
UHGV-0248171_9	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0248171_10	PHROG	phrog_19109	NA	unknown function
UHGV-0248171_10	eggNOG-mapper	1680.BADO_1237	NA	NA
UHGV-0248171_10	Structural annotation	TIGR01725	NA	NA
UHGV-0248171_11	UniRef90	UniRef90_A0A3E5HKK5	Transcriptional regulator	NA
UHGV-0248171_11	eggNOG-mapper	1680.BADO_1236	NA	NA
UHGV-0248171_11	Structural annotation	PF06141	NA	NA
UHGV-0248171_12	PHROG	phrog_2491	major tail protein	tail
UHGV-0248171_12	UniRef90	UniRef90_A0A076JPN9	Gp28	NA
UHGV-0248171_12	eggNOG-mapper	1680.BADO_1235	NA	NA
UHGV-0248171_12	Structural annotation	PF16463, TIGR02241, COG3498	NA	NA
UHGV-0248171_13	UniRef90	UniRef90_A0A076JN63	DNAase primase	NA
UHGV-0248171_13	eggNOG-mapper	1680.BADO_1234	NA	NA
UHGV-0248171_13	Structural annotation	PF08890	NA	NA
UHGV-0248171_14	UniRef90	UniRef90_A0A1X2YXV5	Terminase	NA
UHGV-0248171_14	eggNOG-mapper	398513.BBNG_00857	NA	NA
UHGV-0248171_15	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0248171_15	UniRef90	UniRef90_A0A072MS24	PhageMin_Tail domain-containing protein	NA
UHGV-0248171_15	eggNOG-mapper	1680.BADO_1232	Phage-related minor tail protein	NA
UHGV-0248171_15	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0248171_15	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0248171_15	COG	COG5283	Phage-related tail protein	NA
UHGV-0248171_15	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0248171_16	UniRef90	UniRef90_A0A7Y0EUM5	Tail fiber protein	NA
UHGV-0248171_16	eggNOG-mapper	1680.BADO_1231	NA	NA
UHGV-0248171_16	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0248171_17	PHROG	phrog_538	minor tail protein	tail
UHGV-0248171_17	UniRef90	UniRef90_A0A087BHI6	Phage head fiber protein	NA
UHGV-0248171_17	eggNOG-mapper	1680.BADO_1230	NA	NA
UHGV-0248171_17	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0248171_19	PHROG	phrog_9994	NA	unknown function
UHGV-0248171_19	eggNOG-mapper	1435051.BMOU_0220	NA	NA
UHGV-0248171_19	Structural annotation	PF20747	NA	NA
UHGV-0248171_21	eggNOG-mapper	78345.BMERY_0866	NA	NA
UHGV-0248171_21	Structural annotation	PF08931	NA	NA
UHGV-0248171_22	eggNOG-mapper	1680.BADO_1228	NA	NA
UHGV-0248171_22	Structural annotation	PF08931	NA	NA
UHGV-0248171_23	KOfam	K14059	int; integrase	NA
UHGV-0248171_23	PHROG	phrog_1	integrase	integration and excision
UHGV-0248171_23	UniRef90	UniRef90_A0A1X3A1N7	Recombinase	NA
UHGV-0248171_23	eggNOG-mapper	1680.BADO_1224	DNA integration	NA
UHGV-0248171_23	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0248171_23	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0248171_23	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0248171_24	PHROG	phrog_28754	NA	unknown function
UHGV-0248171_24	UniRef90	UniRef90_A0A174BVV4	Tail type measure protein	NA
UHGV-0248171_24	eggNOG-mapper	1437610.BREU_1370	outer membrane autotransporter barrel domain protein	NA
UHGV-0248171_24	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0248171_26	Structural annotation	PF19487, MF_01537, COG4935	NA	NA
UHGV-0248171_30	UniRef90	UniRef90_A0A3E5HJK4	Histidine kinase	NA
UHGV-0248171_31	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0248171_31	PHROG	phrog_14048	endolysin	lysis
UHGV-0248171_31	UniRef90	UniRef90_A0A564VN80	N-acetylmuramoyl-L-alanine amidase A	NA
UHGV-0248171_31	eggNOG-mapper	158787.BSCA_1068	Ami_2	NA
UHGV-0248171_31	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0248171_31	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0248171_31	Structural annotation	PF08460, PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0248171_32	UniRef90	UniRef90_A0A0A7I2K7	DoxX	NA
UHGV-0248171_32	eggNOG-mapper	1120979.ATVB01000037_gene1493	NA	NA
UHGV-0248171_33	PHROG	phrog_21498	NA	unknown function
UHGV-0248171_33	UniRef90	UniRef90_UPI0016246E09	chromosome partitioning protein ParB	NA
UHGV-0248171_33	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0248171_33	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0248171_33	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0248171_35	UniRef90	UniRef90_D4BRZ3	PBECR4 domain-containing protein	NA
UHGV-0248171_35	eggNOG-mapper	401473.BDP_0967	NA	NA
UHGV-0248171_35	Pfam	PF18813	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4	PBECR4
UHGV-0248171_36	PHROG	phrog_597	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0248171_36	UniRef90	UniRef90_A0A2K9BDN3	Phage associated protein	NA
UHGV-0248171_36	eggNOG-mapper	78346.BRUM_0375	Transcriptional regulator	NA
UHGV-0248171_36	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0248171_36	Structural annotation	PF05930, NF033499, COG3311	NA	NA
UHGV-0248171_39	KOfam	K14059	int; integrase	NA
UHGV-0248171_39	PHROG	phrog_1	integrase	integration and excision
UHGV-0248171_39	UniRef90	UniRef90_A0A412K8D8	Site-specific integrase	NA
UHGV-0248171_39	eggNOG-mapper	1435051.BMOU_0751	Phage integrase family	NA
UHGV-0248171_39	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0248171_39	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0248171_39	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0248171_39	Structural annotation	PF00589, PF02899, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0248171_40	UniRef90	UniRef90_A7A599	Outer membrane insertion signal domain protein	NA
UHGV-0248171_40	eggNOG-mapper	1435051.BMOU_0750	NA	NA
UHGV-0248171_41	eggNOG-mapper	1435051.BMOU_0749	NA	NA
UHGV-0248171_42	PHROG	phrog_87	metallo-protease	other
UHGV-0248171_42	UniRef90	UniRef90_UPI001CF991EA	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0248171_42	eggNOG-mapper	1435051.BMOU_0747	NA	NA
UHGV-0248171_42	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0248171_42	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0248171_43	UniRef90	UniRef90_A0A3E5HJH1	XRE family transcriptional regulator	NA
UHGV-0248171_43	eggNOG-mapper	1435051.BMOU_0746	NA	NA
UHGV-0248171_43	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0248171_44	UniRef90	UniRef90_UPI001CFDF36A	anhydro-N-acetylmuramyl-tripeptide amidase	NA
UHGV-0248171_45	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-0248171_45	UniRef90	UniRef90_A0A174BZI9	The helix-turn-helix motif	NA
UHGV-0248171_45	eggNOG-mapper	78345.BMERY_0907	NA	NA
UHGV-0248171_45	Structural annotation	PF08667, MF_00535, NF041951, COG3093	NA	NA
UHGV-0248171_48	eggNOG-mapper	78346.BRUM_0417	NA	NA
UHGV-0248171_49	eggNOG-mapper	702459.BBPR_0888	NA	NA
UHGV-0248171_50	UniRef90	UniRef90_A0A6B8LJU6	Hypoyhetical protein	NA
UHGV-0248171_51	UniRef90	UniRef90_A0A413KAI3	DNA-binding protein	NA
UHGV-0248171_51	eggNOG-mapper	558173.CDOO_03875	Helix-turn-helix domain	NA
UHGV-0248171_51	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0248171_51	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0248171_52	UniRef90	UniRef90_A0A6B8LMI6	Hypoyhetical protein	NA
UHGV-0248171_53	UniRef90	UniRef90_A0A3E5HJV5	Molecular chaperone GrpE	NA
UHGV-0248171_53	Structural annotation	PF01047	NA	NA
UHGV-0248171_55	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0248171_55	UniRef90	UniRef90_A0A564S1W6	YqaJ domain-containing protein	NA
UHGV-0248171_55	eggNOG-mapper	1437610.BREU_1416	YqaJ-like viral recombinase domain	NA
UHGV-0248171_55	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0248171_55	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0248171_55	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0248171_55	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0248171_56	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0248171_56	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0248171_56	UniRef90	UniRef90_A0A173ZT77	p33	NA
UHGV-0248171_56	eggNOG-mapper	1341695.BBOMB_1056	RecT family	NA
UHGV-0248171_56	Pfam	PF03837	RecT family	RecT
UHGV-0248171_56	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0248171_56	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0248171_56	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0248171_57	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0248171_57	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0248171_57	UniRef90	UniRef90_A0A413KAY2	Single-stranded DNA-binding protein	NA
UHGV-0248171_57	eggNOG-mapper	78346.BRUM_0409	Single-strand binding protein family	NA
UHGV-0248171_57	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0248171_57	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-0248171_57	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0248171_57	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0248171_57	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-0248171_58	UniRef90	UniRef90_A0A6L4V2N7	Ferredoxin	NA
UHGV-0248171_59	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0248171_59	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0248171_59	UniRef90	UniRef90_A0A087BHA1	Gp53 family protein	NA
UHGV-0248171_59	eggNOG-mapper	78345.BMERY_0895	NA	NA
UHGV-0248171_59	Structural annotation	NF007305, COG4570	NA	NA
UHGV-0248171_60	UniRef90	UniRef90_UPI001076266F	transposase	NA
UHGV-0248171_60	eggNOG-mapper	78346.BRUM_0407	NA	NA
UHGV-0248171_60	Structural annotation	PF01815	NA	NA
UHGV-0248171_61	eggNOG-mapper	1394176.AWUO01000011_gene389	NA	NA
UHGV-0248171_61	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0248171_63	UniRef90	UniRef90_UPI001CFBB2F5	zinc ribbon domain-containing protein	NA
UHGV-0248171_64	PHROG	phrog_2447	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0248171_64	eggNOG-mapper	78346.BRUM_0405	NA	NA
UHGV-0248171_64	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0248171_65	UniRef90	UniRef90_A0A072MSY3	GTP-binding protein	NA
UHGV-0248171_67	PHROG	phrog_236	nucleotide kinase	other
UHGV-0248171_67	UniRef90	UniRef90_UPI001CF94439	NA	NA
UHGV-0248171_67	eggNOG-mapper	1680.BADO_1253	NA	NA
UHGV-0248171_67	Pfam	PF11753	NA	DUF3310
UHGV-0248171_69	UniRef90	UniRef90_A0A412K9M9	Antitoxin	NA
UHGV-0248171_69	eggNOG-mapper	78346.BRUM_0403	NA	NA
UHGV-0248171_70	PHROG	phrog_908	NA	unknown function
UHGV-0248171_70	UniRef90	UniRef90_UPI001D00FC40	PhnA protein	NA
UHGV-0248171_70	eggNOG-mapper	78346.BRUM_0402	NA	NA
UHGV-0248171_70	Structural annotation	COG0789	NA	NA
UHGV-0248171_72	PHROG	phrog_226	minor tail protein	tail
UHGV-0248171_72	UniRef90	UniRef90_A0A3G3M4U7	Terminase small subunit	NA
UHGV-0248171_72	eggNOG-mapper	1437603.BMON_0142	NA	NA
UHGV-0248171_73	PHROG	phrog_19179	terminase large subunit	head and packaging
UHGV-0248171_73	UniRef90	UniRef90_A0A1I3YIE9	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0248171_73	eggNOG-mapper	1437603.BMON_0141	Terminase	NA
UHGV-0248171_73	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0248171	Yes	40,780 bps	58.65%	100.00%	0.9820
UHGV-0047149	No	45,679 bps	58.29%	99.90%	0.9763
UHGV-1313520	No	21,868 bps	58.77%	54.11%	0.9828
UHGV-1460839	No	20,513 bps	59.72%	50.81%	0.9813
UHGV-1745495	No	20,190 bps	59.23%	49.97%	0.9832
UHGV-1656997	No	18,359 bps	59.50%	45.56%	0.9818
UHGV-1657393	No	16,888 bps	59.41%	39.07%	0.9763
UHGV-1698646	No	14,474 bps	58.54%	36.02%	0.9815
UHGV-1655575	No	14,150 bps	59.98%	35.02%	0.9829
UHGV-1566278	No	11,839 bps	59.59%	29.37%	0.9826
UHGV-1601034	No	11,802 bps	59.52%	29.28%	0.9826
UHGV-1781707	No	10,908 bps	59.43%	27.09%	0.9829
UHGV-1784015	No	11,072 bps	60.00%	26.46%	0.9826
UHGV-1755660	No	10,865 bps	59.81%	25.97%	0.9826
UHGV-1715708	No	10,566 bps	60.92%	25.25%	0.9829
UHGV-1719179	No	10,510 bps	59.83%	25.12%	0.9814
UHGV-2033176	No	10,289 bps	59.81%	24.59%	0.9824