vOTU-050570

Overview

vOTU representative UHGV-0321997

No. of genomes 3

Genome length 35,188 bps

Completeness 100.00% (complete)

Host Ruminococcus B gnavus

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-050570
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 › vSUBFAM-00099 › vGENUS-17258 › vSUBGEN-31902 › vOTU-050570
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Lachnospirales › Lachnospiraceae › Ruminococcus B › Ruminococcus B gnavus
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0321997
BioSample	NA
Genome length	35,188 bps
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
CDS count	56
CDS density	91.77%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0321997_1	eggNOG-mapper	411470.RUMGNA_02218	COG NOG36366 non supervised orthologous group	NA
UHGV-0321997_1	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0321997_2	PHROG	phrog_422	major head protein	head and packaging
UHGV-0321997_2	eggNOG-mapper	411470.RUMGNA_02219	NA	NA
UHGV-0321997_2	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0321997_3	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0321997_3	eggNOG-mapper	411470.RUMGNA_02220	NA	NA
UHGV-0321997_4	PHROG	phrog_3366	NA	unknown function
UHGV-0321997_4	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-0321997_4	Pfam	PF20536	NA	DUF6751
UHGV-0321997_4	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0321997_5	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0321997_5	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-0321997_5	eggNOG-mapper	411470.RUMGNA_02222	NA	NA
UHGV-0321997_5	Structural annotation	PF11114	NA	NA
UHGV-0321997_6	PHROG	phrog_3266	tail completion	connector
UHGV-0321997_6	eggNOG-mapper	411470.RUMGNA_02223	NA	NA
UHGV-0321997_6	Structural annotation	PF12691	NA	NA
UHGV-0321997_7	PHROG	phrog_3099	NA	unknown function
UHGV-0321997_7	eggNOG-mapper	411470.RUMGNA_02224	NA	NA
UHGV-0321997_7	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0321997_8	PHROG	phrog_4450	NA	unknown function
UHGV-0321997_8	UniRef90	UniRef90_UPI001C0AC01D	AP endonuclease	NA
UHGV-0321997_8	eggNOG-mapper	1235792.C808_05374	NA	NA
UHGV-0321997_8	Pfam	PF20378	NA	DUF6673
UHGV-0321997_8	Structural annotation	PF20378	NA	NA
UHGV-0321997_9	PHROG	phrog_706	NA	unknown function
UHGV-0321997_9	UniRef90	UniRef90_UPI00195660EF	Gp15 family bacteriophage protein	NA
UHGV-0321997_9	eggNOG-mapper	658655.HMPREF0988_02553	Bacteriophage Gp15 protein	NA
UHGV-0321997_9	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0321997_9	Structural annotation	PF06854	NA	NA
UHGV-0321997_10	eggNOG-mapper	1235792.C808_05376	NA	NA
UHGV-0321997_10	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0321997_11	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0321997_11	UniRef90	UniRef90_UPI001C8EB1BF	tape measure protein	NA
UHGV-0321997_11	eggNOG-mapper	742765.HMPREF9457_02136	nuclear chromosome segregation	NA
UHGV-0321997_11	COG	COG1511	NA	NA
UHGV-0321997_11	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0321997_12	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0321997_12	UniRef90	UniRef90_A7B3U8	Putative phage tail component domain protein	NA
UHGV-0321997_12	eggNOG-mapper	411470.RUMGNA_02229	NA	NA
UHGV-0321997_12	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0321997_12	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0321997_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-0321997_12	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0321997_13	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0321997_13	UniRef90	UniRef90_A7B3U9	Phage minor structural protein, N-terminal domain protein	NA
UHGV-0321997_13	eggNOG-mapper	411470.RUMGNA_02230	NA	NA
UHGV-0321997_13	Structural annotation	PF14594, PF08931, PF20942, TIGR01665, COG4926	NA	NA
UHGV-0321997_14	eggNOG-mapper	608534.GCWU000341_02271	NA	NA
UHGV-0321997_15	PHROG	phrog_10091	holin	lysis
UHGV-0321997_15	UniRef90	UniRef90_A0A2N5P008	Phage holin	NA
UHGV-0321997_15	eggNOG-mapper	428127.EUBDOL_01206	COG5546 Small integral membrane protein	NA
UHGV-0321997_15	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0321997_15	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0321997_15	COG	COG5546	NA	NA
UHGV-0321997_15	Structural annotation	COG5546	NA	NA
UHGV-0321997_16	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0321997_16	PHROG	phrog_435	endolysin	lysis
UHGV-0321997_16	UniRef90	UniRef90_A0A2N5NRG3	MurNAc-LAA domain-containing protein	NA
UHGV-0321997_16	eggNOG-mapper	411470.RUMGNA_02814	Ami_3	NA
UHGV-0321997_16	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0321997_16	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0321997_16	Structural annotation	PF01520, MF_00417, TIGR02883, COG0860	NA	NA
UHGV-0321997_17	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0321997_17	PHROG	phrog_95	integrase	integration and excision
UHGV-0321997_17	UniRef90	UniRef90_UPI0011853F05	recombinase family protein	NA
UHGV-0321997_17	eggNOG-mapper	411460.RUMTOR_02053	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0321997_17	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0321997_17	Pfam	PF07508	Recombinase	Recombinase
UHGV-0321997_17	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0321997_17	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0321997_17	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0321997_18	PHROG	phrog_806	NA	unknown function
UHGV-0321997_18	UniRef90	UniRef90_S2YED8	NA	NA
UHGV-0321997_18	eggNOG-mapper	411468.CLOSCI_01239	NA	NA
UHGV-0321997_18	Pfam	PF16729	NA	DUF5067
UHGV-0321997_18	Structural annotation	PF16729, MF_00791, NF003967, COG2967	NA	NA
UHGV-0321997_19	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0321997_19	UniRef90	UniRef90_A0A2N5NVN2	HTH cro/C1-type domain-containing protein	NA
UHGV-0321997_19	eggNOG-mapper	1235790.C805_00012	Helix-turn-helix domain	NA
UHGV-0321997_19	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0321997_19	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0321997_19	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0321997_21	PHROG	phrog_28292	NA	unknown function
UHGV-0321997_21	UniRef90	UniRef90_A0A8B3BZ84	3-hydroxyacyl-CoA dehydrogenase	NA
UHGV-0321997_21	eggNOG-mapper	500632.CLONEX_01438	NA	NA
UHGV-0321997_22	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0321997_22	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0321997_22	UniRef90	UniRef90_UPI0015706F54	phage regulatory protein/antirepressor Ant	NA
UHGV-0321997_22	eggNOG-mapper	262071.A3QSE0_9CAUD	DNA binding	NA
UHGV-0321997_22	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0321997_22	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0321997_22	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0321997_22	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3646	NA	NA
UHGV-0321997_23	eggNOG-mapper	1235790.C805_00014	NA	NA
UHGV-0321997_27	PHROG	phrog_5070	NA	unknown function
UHGV-0321997_27	UniRef90	UniRef90_C6L9Y5	Bacterial transferase hexapeptide repeat protein	NA
UHGV-0321997_27	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0321997_27	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0321997_29	PHROG	phrog_30234	NA	unknown function
UHGV-0321997_29	eggNOG-mapper	33035.JPJF01000071_gene4461	NA	NA
UHGV-0321997_31	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0321997_31	UniRef90	UniRef90_A0A1C5YV83	AAA domain-containing protein	NA
UHGV-0321997_31	eggNOG-mapper	1304866.K413DRAFT_0827	AAA domain	NA
UHGV-0321997_31	Pfam	PF13479	AAA domain	AAA_24
UHGV-0321997_31	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0321997_33	PHROG	phrog_18107	NA	unknown function
UHGV-0321997_33	eggNOG-mapper	397290.C810_05167	NA	NA
UHGV-0321997_33	Structural annotation	PF05037	NA	NA
UHGV-0321997_34	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0321997_34	UniRef90	UniRef90_A0A851IBF4	ERCC4 domain-containing protein	NA
UHGV-0321997_34	eggNOG-mapper	397290.C810_05169	ERCC4 domain	NA
UHGV-0321997_34	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0321997_34	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0321997_35	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0321997_35	UniRef90	UniRef90_UPI000DC4536F	DnaD domain-containing protein	NA
UHGV-0321997_35	eggNOG-mapper	1111134.HMPREF1253_1417	Transcriptional regulator	NA
UHGV-0321997_35	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0321997_35	Structural annotation	PF12793, NF033788, COG0640	NA	NA
UHGV-0321997_36	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0321997_36	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0321997_36	UniRef90	UniRef90_A0A1I7HB00	AAA domain-containing protein	NA
UHGV-0321997_36	eggNOG-mapper	1298920.KI911353_gene2713	Participates in initiation and elongation during chromosome replication	NA
UHGV-0321997_36	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0321997_36	COG	COG0305	Replicative DNA helicase	NA
UHGV-0321997_36	Structural annotation	PF03796, PF16793, MF_01498, MF_00700, NF004109, NF040562, COG0305, COG1467	NA	NA
UHGV-0321997_37	eggNOG-mapper	1235798.C817_03496	NA	NA
UHGV-0321997_38	Structural annotation	NF041290	NA	NA
UHGV-0321997_39	eggNOG-mapper	97139.C824_00033	NA	NA
UHGV-0321997_40	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0321997_40	UniRef90	UniRef90_U2DJA0	Restriction alleviation protein, Lar family	NA
UHGV-0321997_40	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0321997_40	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0321997_40	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0321997_42	UniRef90	UniRef90_A0A2N5PKF4	NA	NA
UHGV-0321997_42	Pfam	PF04448	NA	DUF551
UHGV-0321997_42	Structural annotation	PF04448	NA	NA
UHGV-0321997_44	eggNOG-mapper	411470.RUMGNA_02203	NA	NA
UHGV-0321997_46	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0321997_46	UniRef90	UniRef90_A0A7X4ZQ48	RNA polymerase subunit sigma-70	NA
UHGV-0321997_46	eggNOG-mapper	1235792.C808_05360	NA	NA
UHGV-0321997_46	Structural annotation	PF02996	NA	NA
UHGV-0321997_47	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0321997_47	UniRef90	UniRef90_A0A2N5PKF8	Transposase	NA
UHGV-0321997_47	eggNOG-mapper	411470.RUMGNA_02210	transposase activity	NA
UHGV-0321997_47	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0321997_47	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0321997_47	Structural annotation	PF07141	NA	NA
UHGV-0321997_48	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0321997_48	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0321997_48	UniRef90	UniRef90_A7B3T0	Phage terminase, large subunit, PBSX family	NA
UHGV-0321997_48	eggNOG-mapper	411470.RUMGNA_02211	NA	NA
UHGV-0321997_48	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0321997_48	COG	COG1783	Phage terminase large subunit	NA
UHGV-0321997_48	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0321997_49	PHROG	phrog_533	portal protein	head and packaging
UHGV-0321997_49	UniRef90	UniRef90_A7B3T1	Putative phage minor capsid protein	NA
UHGV-0321997_49	eggNOG-mapper	411470.RUMGNA_02212	NA	NA
UHGV-0321997_49	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0321997_50	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0321997_50	UniRef90	UniRef90_UPI001EE14397	phage minor capsid protein	NA
UHGV-0321997_50	eggNOG-mapper	411470.RUMGNA_02213	Phage minor capsid protein 2	NA
UHGV-0321997_50	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0321997_50	COG	COG2369	NA	NA
UHGV-0321997_50	Structural annotation	PF06152	NA	NA
UHGV-0321997_51	eggNOG-mapper	411470.RUMGNA_02214	NA	NA
UHGV-0321997_51	Structural annotation	PF08948, MF_01537, NF007541, COG3123	NA	NA
UHGV-0321997_52	eggNOG-mapper	411470.RUMGNA_02215	NA	NA
UHGV-0321997_54	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0321997_54	Structural annotation	NF040910	NA	NA
UHGV-0321997_56	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0321997_56	UniRef90	UniRef90_A5KPA4	Phage minor structural protein GP20	NA
UHGV-0321997_56	eggNOG-mapper	411470.RUMGNA_02218	COG NOG36366 non supervised orthologous group	NA
UHGV-0321997_56	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0321997	Yes	35,188 bps	41.89%	100.00%	0.9826
UHGV-0391323	No	13,997 bps	42.56%	37.31%	0.9828
UHGV-1951997	No	11,229 bps	40.15%	29.33%	0.9826